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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of transcription initiation from RNA polymerase II promoter
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Accession:GO:0060261 term browser browse the term
Definition:Any process that increases the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter.


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positive regulation of transcription initiation from RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHX36 DEAH-box helicase 36 IEA Ensembl GO_REF:0000107 NCBI chr13:94,298,790...94,350,333
Ensembl chr13:94,298,790...94,350,312
JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (MGI:MGI:5314556|PMID:22323595) MGI PMID:22323595 MGI:MGI:5314556 NCBI chr 6:51,783,537...51,808,898 JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor IEA Ensembl GO_REF:0000107 NCBI chr14:89,998,125...90,075,911
Ensembl chr14:90,002,024...90,075,898
JBrowse link
G GTF2B general transcription factor IIB IEA Ensembl GO_REF:0000107 NCBI chr 4:127,522,802...127,559,605
Ensembl chr 4:127,522,524...127,571,378
JBrowse link
G HNF1A HNF1 homeobox A ISO (PMID:15355349) UniProtKB PMID:15355349 NCBI chr14:40,868,819...40,888,322
Ensembl chr14:40,868,676...40,888,328
JBrowse link
G HNF1B HNF1 homeobox B IEA Ensembl GO_REF:0000107 NCBI chr12:39,143,119...39,201,631
Ensembl chr12:39,143,121...39,313,511
JBrowse link
G IRF8 interferon regulatory factor 8 NOT ISO (MGI:MGI:5448615|PMID:22942423) MGI PMID:22942423 MGI:MGI:5448615 NCBI chr 6:3,041,617...3,060,685
Ensembl chr 6:3,041,645...3,137,549
JBrowse link
G LOC100512195 activated RNA polymerase II transcriptional coactivator p15 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:17,576,852...17,578,161 JBrowse link
G MED1 mediator complex subunit 1 ISS UniProt GO_REF:0000024 NCBI chr12:22,830,405...22,872,420
Ensembl chr12:22,839,005...22,872,407
JBrowse link
G MED12 mediator complex subunit 12 IEA Ensembl GO_REF:0000107 NCBI chr  X:57,150,884...57,174,367
Ensembl chr  X:57,150,578...57,175,352
JBrowse link
G MED13 mediator complex subunit 13 IEA Ensembl GO_REF:0000107 NCBI chr12:36,333,741...36,430,740
Ensembl chr12:36,333,191...36,429,291
JBrowse link
G MED14 mediator complex subunit 14 IEA Ensembl GO_REF:0000107 NCBI chr  X:36,354,057...36,424,837
Ensembl chr  X:36,354,061...36,424,715
JBrowse link
G MED16 mediator complex subunit 16 IEA Ensembl GO_REF:0000107 NCBI chr 2:77,490,953...77,526,872
Ensembl chr 2:77,490,996...77,527,659
JBrowse link
G MED17 mediator complex subunit 17 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chr 9:26,192,206...26,214,177 JBrowse link
G MED24 mediator complex subunit 24 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chr12:22,309,004...22,332,203
Ensembl chr12:22,296,146...22,332,199
JBrowse link
G MED30 mediator complex subunit 30 IEA Ensembl GO_REF:0000107 NCBI chr 4:21,198,740...21,215,634
Ensembl chr 4:21,194,930...21,215,618
JBrowse link
G MED4 mediator complex subunit 4 IEA Ensembl GO_REF:0000107 NCBI chr11:19,551,858...19,566,915
Ensembl chr11:19,551,863...19,566,926
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor ISO (MGI:MGI:6377809|PMID:26691508) CACAO PMID:26691508 MGI:MGI:6377809 NCBI chr 4:12,455,141...12,460,360
Ensembl chr 4:12,455,119...12,461,078
JBrowse link
G NKX2-5 NK2 homeobox 5 IEA Ensembl GO_REF:0000107 NCBI chr16:51,086,014...51,089,165
Ensembl chr16:51,086,011...51,089,165
JBrowse link
G PAXIP1 PAX interacting protein 1 IEA Ensembl GO_REF:0000107 NCBI chr18:3,066,853...3,111,239
Ensembl chr18:3,066,847...3,111,239
JBrowse link
G POU5F1 POU class 5 homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:23,564,654...23,570,691 JBrowse link
G SRF serum response factor IEA Ensembl GO_REF:0000107 NCBI chr 7:38,213,300...38,223,686
Ensembl chr 7:38,213,063...38,222,140
JBrowse link
G SUB1 SUB1 regulator of transcription IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:18,758,886...18,779,421
Ensembl chr16:18,758,962...18,779,419
JBrowse link
G TAF6 TATA-box binding protein associated factor 6 ISO (PMID:11583621), (PMID:18628956) UniProt PMID:11583621, PMID:18628956 NCBI chr 3:8,017,675...8,026,982
Ensembl chr 3:8,017,674...8,026,972
JBrowse link
G XPA XPA, DNA damage recognition and repair factor IEA Ensembl GO_REF:0000107 NCBI chr 1:239,532,331...239,568,589
Ensembl chr 1:239,532,246...239,568,649
JBrowse link
positive regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHR aryl hydrocarbon receptor ISO (MGI:MGI:62922|PMID:8215422) MGI PMID:8215422 MGI:MGI:62922 NCBI chr 9:86,511,866...86,555,950
Ensembl chr 9:86,511,369...86,555,943
JBrowse link
G CAND1 cullin associated and neddylation dissociated 1 ISO PMID:10567521 UniProt PMID:10567521 RGD:8553447 NCBI chr 5:31,657,508...31,700,163
Ensembl chr 5:31,657,623...31,696,866
JBrowse link
G CREB1 cAMP responsive element binding protein 1 ISO RGD PMID:16891311 RGD:1625706 NCBI chr15:110,705,548...110,773,037
Ensembl chr15:110,697,408...110,771,755
JBrowse link
G ESR1 estrogen receptor 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:14,217,032...14,604,906
Ensembl chr 1:14,217,036...14,493,363
JBrowse link
G IKZF1 IKAROS family zinc finger 1 ISO (MGI:MGI:5317044|PMID:21245044) MGI PMID:21245044 MGI:MGI:5317044 NCBI chr 9:136,372,202...136,464,942
Ensembl chr 9:136,372,724...136,464,942
JBrowse link
G PSMC2 proteasome 26S subunit, ATPase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:103,362,684...103,376,048
Ensembl chr 9:103,362,598...103,376,346
JBrowse link
G PSMC3 proteasome 26S subunit, ATPase 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:15,185,482...15,191,189
Ensembl chr 2:15,066,547...15,193,085
JBrowse link
G PSMC4 proteasome 26S subunit, ATPase 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:48,406,237...48,414,470
Ensembl chr 6:48,406,376...48,416,216
JBrowse link
G PSMC6 proteasome 26S subunit, ATPase 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:182,329,070...182,354,959
Ensembl chr 1:182,328,521...182,354,958
JBrowse link
G RAPSN receptor associated protein of the synapse IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:15,166,968...15,181,011
Ensembl chr 2:15,066,547...15,193,085
JBrowse link
G TP53 tumor protein p53 IEA Ensembl GO_REF:0000107 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,643...52,953,819
JBrowse link
G WNT10B Wnt family member 10B IEA Ensembl GO_REF:0000107 NCBI chr 5:14,997,377...15,013,928
Ensembl chr 5:14,997,381...15,013,919
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16545
    metabolic process 10588
      positive regulation of metabolic process 3836
        positive regulation of macromolecule metabolic process 3553
          positive regulation of gene expression 2330
            positive regulation of transcription, DNA-templated 1587
              positive regulation of transcription by RNA polymerase II 1304
                positive regulation of transcription initiation from RNA polymerase II promoter 37
                  positive regulation of RNA polymerase II transcription preinitiation complex assembly 12
Path 2
Term Annotations click to browse term
  biological_process 16545
    metabolic process 10588
      cellular metabolic process 9576
        cellular aromatic compound metabolic process 5111
          nucleobase-containing compound metabolic process 4911
            nucleic acid metabolic process 4490
              RNA metabolic process 4016
                RNA biosynthetic process 3172
                  regulation of RNA biosynthetic process 3065
                    regulation of nucleic acid-templated transcription 3060
                      regulation of transcription, DNA-templated 3010
                        regulation of DNA-templated transcription, initiation 53
                          positive regulation of DNA-templated transcription, initiation 45
                            positive regulation of transcription initiation from RNA polymerase II promoter 37
                              positive regulation of RNA polymerase II transcription preinitiation complex assembly 12
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.