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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of transcription initiation from RNA polymerase II promoter
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Accession:GO:0060261 term browser browse the term
Definition:Any process that increases the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter.


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positive regulation of transcription initiation from RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx36 DEAH-box helicase 36 ISS
ISO
GO_REF:0000024
(PMID:21993297)
UniProt
RGD
PMID:21993297 GO_REF:0000024 NCBI chr 2:152,785,844...152,824,549
Ensembl chr 2:152,785,844...152,824,547
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (MGI:MGI:5314556|PMID:22323595) RGD PMID:22323595 MGI:MGI:5314556 NCBI chr 1:80,256,973...80,268,198
Ensembl chr 1:80,256,973...80,268,198
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO MGI:MGI:1932102|MGI:MGI:99135 (MGI:MGI:5314556|PMID:22323595) RGD PMID:22323595 MGI:MGI:5314556 NCBI chr16:8,734,028...8,804,610
Ensembl chr16:8,734,035...8,804,610
JBrowse link
G Gtf2b general transcription factor IIB ISS
ISO
IEA
GO_REF:0000024
(PMID:12931194), (PMID:9420329)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:9420329, PMID:12931194 GO_REF:0000024, GO_REF:0000107 NCBI chr 2:248,709,433...248,727,741
Ensembl chr 2:248,715,281...248,727,741
JBrowse link
G Hnf1a HNF1 homeobox A ISO UniProtKB:P35680 (PMID:15355349) RGD PMID:15355349 NCBI chr12:47,407,811...47,433,342
Ensembl chr12:47,407,811...47,433,342
JBrowse link
G Hnf1b HNF1 homeobox B ISO (PMID:15355349) RGD PMID:15355349 NCBI chr10:71,159,863...71,218,902
Ensembl chr10:71,159,869...71,218,902
JBrowse link
G Irf8 interferon regulatory factor 8 NOT ISO (MGI:MGI:5448615|PMID:22942423) RGD PMID:22942423 MGI:MGI:5448615 NCBI chr19:54,314,859...54,336,643
Ensembl chr19:54,314,865...54,336,640
JBrowse link
G Med1 mediator complex subunit 1 ISO
ISS
(PMID:12218053), (PMID:16314496)
GO_REF:0000024
RGD
UniProt
PMID:12218053, PMID:16314496 GO_REF:0000024 NCBI chr10:86,101,560...86,145,271
Ensembl chr10:86,103,600...86,144,880
JBrowse link
G Med12 mediator complex subunit 12 ISO
IEA
(PMID:12218053)
GO_REF:0000107
RGD
Ensembl
PMID:12218053 GO_REF:0000107 NCBI chr  X:71,174,653...71,197,812
Ensembl chr  X:71,174,699...71,197,812
JBrowse link
G Med13 mediator complex subunit 13 ISO
IEA
(PMID:12218053)
GO_REF:0000107
RGD
Ensembl
PMID:12218053 GO_REF:0000107 NCBI chr10:73,702,327...73,787,084
Ensembl chr10:73,702,327...73,787,083
JBrowse link
G Med14 mediator complex subunit 14 ISO
IEA
(PMID:12218053)
GO_REF:0000107
RGD
Ensembl
PMID:12218053 GO_REF:0000107 NCBI chr  X:10,964,035...11,082,403
Ensembl chr  X:10,963,809...11,082,565
JBrowse link
G Med16 mediator complex subunit 16 ISO
IEA
(PMID:12218053)
GO_REF:0000107
RGD
Ensembl
PMID:12218053 GO_REF:0000107 NCBI chr 7:12,619,739...12,632,241
Ensembl chr 7:12,542,713...12,632,298
JBrowse link
G Med17 mediator complex subunit 17 ISO (PMID:12218053) RGD PMID:12218053 NCBI chr 8:13,522,257...13,835,302
Ensembl chr 8:13,819,563...13,835,168
JBrowse link
G Med24 mediator complex subunit 24 ISO (PMID:12218053) RGD PMID:12218053 NCBI chr10:86,620,166...86,658,014
Ensembl chr10:86,620,160...86,645,529
JBrowse link
G Med30 mediator complex subunit 30 ISO
IEA
(PMID:12218053)
GO_REF:0000107
RGD
Ensembl
PMID:12218053 GO_REF:0000107 NCBI chr 7:92,234,584...92,260,019
Ensembl chr 7:92,234,597...92,256,100
JBrowse link
G Med4 mediator complex subunit 4 ISO
IEA
(PMID:12218053)
GO_REF:0000107
RGD
Ensembl
PMID:12218053 GO_REF:0000107 NCBI chr15:55,406,543...55,416,816
Ensembl chr15:55,406,543...55,416,815
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO (MGI:MGI:6377809|PMID:26691508) RGD PMID:26691508 MGI:MGI:6377809 NCBI chr 7:102,586,313...102,591,240
Ensembl chr 7:102,586,313...102,591,240
JBrowse link
G Nkx2-5 NK2 homeobox 5 ISO
IEA
(MGI:MGI:83559|PMID:8887666)
GO_REF:0000107
RGD
Ensembl
PMID:8887666 GO_REF:0000107, MGI:MGI:83559 NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764
JBrowse link
G Paxip1 PAX interacting protein 1 ISO (PMID:17925232)
(MGI:MGI:4354659|PMID:19583951), (MGI:MGI:4821506|PMID:20671152)
RGD PMID:17925232, PMID:19583951, PMID:20671152 MGI:MGI:4354659, MGI:MGI:4821506 NCBI chr 4:3,956,931...4,008,326
Ensembl chr 4:3,959,640...4,008,326
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO (MGI:MGI:6377809|PMID:26691508) RGD PMID:26691508 MGI:MGI:6377809 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
G Srf serum response factor ISO (PMID:8887666) RGD PMID:8887666 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
G Sub1 SUB1 regulator of transcription IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:62,019,902...62,034,704
Ensembl chr 2:62,022,567...62,034,628
JBrowse link
G Taf6 TATA-box binding protein associated factor 6 ISO (PMID:11583621), (PMID:18628956) RGD PMID:11583621, PMID:18628956 NCBI chr12:19,320,269...19,328,706
Ensembl chr12:19,320,271...19,328,637
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor ISO MGI:MGI:1100494 (MGI:MGI:5314556|PMID:22323595) RGD PMID:22323595 MGI:MGI:5314556 NCBI chr 5:61,749,767...61,793,641
Ensembl chr 5:61,749,767...61,792,928
JBrowse link
positive regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor ISO (MGI:MGI:62922|PMID:8215422) RGD PMID:8215422 MGI:MGI:62922 NCBI chr 6:54,963,990...55,001,806
Ensembl chr 6:54,963,990...55,001,464
JBrowse link
G Cand1 cullin-associated and neddylation-dissociated 1 IDA PMID:10567521 UniProt PMID:10567521 RGD:8553447 NCBI chr 7:62,124,362...62,162,451
Ensembl chr 7:62,124,362...62,162,453
JBrowse link
G Creb1 cAMP responsive element binding protein 1 IMP RGD PMID:16891311 RGD:1625706 NCBI chr 9:71,229,753...71,298,994
Ensembl chr 9:71,230,108...71,293,435
JBrowse link
G Esr1 estrogen receptor 1 IEA
ISO
GO_REF:0000107
(PMID:9841876)
Ensembl
RGD
PMID:9841876 GO_REF:0000107 NCBI chr 1:41,192,029...41,594,799
Ensembl chr 1:41,192,824...41,594,796
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 ISO MGI:MGI:2158690 (MGI:MGI:5317044|PMID:21245044) RGD PMID:21245044 MGI:MGI:5317044 NCBI chr14:91,782,281...91,867,828
Ensembl chr14:91,782,354...91,867,424
JBrowse link
G Psmc2 proteasome 26S subunit, ATPase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:9,867,132...9,881,383
Ensembl chr 4:9,867,101...9,881,484
JBrowse link
G Psmc3 proteasome 26S subunit, ATPase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:79,876,938...79,882,319
Ensembl chr 3:79,876,938...79,882,319
JBrowse link
G Psmc4 proteasome 26S subunit, ATPase 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:84,978,220...84,986,536
Ensembl chr 1:84,978,206...84,986,581
JBrowse link
G Psmc5 proteasome 26S subunit, ATPase 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:94,445,877...94,451,811
Ensembl chr10:94,445,877...94,451,811
JBrowse link
G Psmc6 proteasome 26S subunit, ATPase 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:19,667,453...19,688,916
Ensembl chr15:19,667,453...19,688,914
JBrowse link
G Tp53 tumor protein p53 ISO (PMID:24289924) RGD PMID:24289924 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
G Wnt10b Wnt family member 10B ISO (MGI:MGI:3820325|PMID:19056892) RGD PMID:19056892 MGI:MGI:3820325 NCBI chr 7:140,448,284...140,466,159
Ensembl chr 7:140,448,465...140,454,268
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20017
    metabolic process 12256
      positive regulation of metabolic process 4083
        positive regulation of macromolecule metabolic process 3765
          positive regulation of gene expression 2524
            positive regulation of transcription, DNA-templated 1698
              positive regulation of transcription by RNA polymerase II 1390
                positive regulation of transcription initiation from RNA polymerase II promoter 36
                  positive regulation of RNA polymerase II transcription preinitiation complex assembly 12
Path 2
Term Annotations click to browse term
  biological_process 20017
    metabolic process 12256
      cellular metabolic process 11064
        cellular aromatic compound metabolic process 5708
          nucleobase-containing compound metabolic process 5483
            nucleic acid metabolic process 4980
              RNA metabolic process 4470
                RNA biosynthetic process 3478
                  regulation of RNA biosynthetic process 3343
                    regulation of nucleic acid-templated transcription 3338
                      regulation of transcription, DNA-templated 3289
                        regulation of DNA-templated transcription, initiation 52
                          positive regulation of DNA-templated transcription, initiation 44
                            positive regulation of transcription initiation from RNA polymerase II promoter 36
                              positive regulation of RNA polymerase II transcription preinitiation complex assembly 12
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.