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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of transcription initiation from RNA polymerase II promoter
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Accession:GO:0060261 term browser browse the term
Definition:Any process that increases the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter.


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positive regulation of transcription initiation from RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx36 DEAH-box helicase 36 ISO (PMID:21993297) UniProt PMID:21993297 NCBI chrNW_004936519:1,946,684...1,987,036 JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (MGI:MGI:5314556|PMID:22323595) MGI PMID:22323595 MGI:MGI:5314556 NCBI chrNW_004936706:1,854,938...1,867,521 JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO (MGI:MGI:5314556|PMID:22323595) MGI PMID:22323595 MGI:MGI:5314556 NCBI chrNW_004936728:706,499...843,447 JBrowse link
G Hnf1a HNF1 homeobox A ISO (PMID:15355349) UniProtKB PMID:15355349 NCBI chrNW_004936668:62,103...81,549 JBrowse link
G Hnf1b HNF1 homeobox B ISO (PMID:15355349) UniProtKB PMID:15355349 NCBI chrNW_004936490:649,551...702,448 JBrowse link
G Irf8 interferon regulatory factor 8 NOT ISO (MGI:MGI:5448615|PMID:22942423) MGI PMID:22942423 MGI:MGI:5448615 NCBI chrNW_004936641:2,608,109...2,622,446 JBrowse link
G Med1 mediator complex subunit 1 ISO (PMID:12218053), (PMID:16314496) UniProt PMID:12218053, PMID:16314496 NCBI chrNW_004936490:14,625,201...14,663,184 JBrowse link
G Med12 mediator complex subunit 12 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chrNW_004936762:460,342...483,264 JBrowse link
G Med13 mediator complex subunit 13 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chrNW_004936490:3,204,717...3,293,458 JBrowse link
G Med14 mediator complex subunit 14 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chrNW_004936502:7,280,606...7,350,750 JBrowse link
G Med16 mediator complex subunit 16 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chrNW_004936588:352,723...370,898 JBrowse link
G Med17 mediator complex subunit 17 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chrNW_004936674:998,036...1,019,937 JBrowse link
G Med24 mediator complex subunit 24 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chrNW_004936490:15,146,598...15,181,449 JBrowse link
G Med30 mediator complex subunit 30 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chrNW_004936470:28,798,356...28,822,143 JBrowse link
G Med4 mediator complex subunit 4 ISO (PMID:12218053) UniProt PMID:12218053 NCBI chrNW_004936565:1,397,434...1,414,674 JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO (MGI:MGI:6377809|PMID:26691508) CACAO PMID:26691508 MGI:MGI:6377809 NCBI chrNW_004936470:20,480,844...20,485,955 JBrowse link
G Nkx2-5 NK2 homeobox 5 ISO (MGI:MGI:83559|PMID:8887666) BHF-UCL PMID:8887666 MGI:MGI:83559 NCBI chrNW_004936609:2,406,004...2,408,980 JBrowse link
G Paxip1 PAX interacting protein 1 ISO (PMID:17925232)
(MGI:MGI:4354659|PMID:19583951), (MGI:MGI:4821506|PMID:20671152)
UniProtKB PMID:17925232, PMID:19583951, PMID:20671152 MGI:MGI:4354659, MGI:MGI:4821506 NCBI chrNW_004936527:9,440,129...9,488,215 JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO (MGI:MGI:6377809|PMID:26691508) CACAO PMID:26691508 MGI:MGI:6377809 NCBI chrNW_004936837:827,568...838,933 JBrowse link
G Srf serum response factor ISO (PMID:8887666) BHF-UCL PMID:8887666 NCBI chrNW_004936476:16,779,941...16,789,499 JBrowse link
G Taf6 TATA-box binding protein associated factor 6 ISO (PMID:11583621), (PMID:18628956) UniProt PMID:11583621, PMID:18628956 NCBI chrNW_004936543:250,174...256,405 JBrowse link
G Xpa XPA, DNA damage recognition and repair factor ISO (MGI:MGI:5314556|PMID:22323595) MGI PMID:22323595 MGI:MGI:5314556 NCBI chrNW_004936524:6,467,365...6,493,556 JBrowse link
positive regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor ISO (MGI:MGI:62922|PMID:8215422) MGI PMID:8215422 MGI:MGI:62922 NCBI chrNW_004936546:3,737,908...3,783,492 JBrowse link
G Cand1 cullin associated and neddylation dissociated 1 ISO PMID:10567521 UniProt PMID:10567521 RGD:8553447 NCBI chrNW_004936545:5,217,947...5,255,596 JBrowse link
G Creb1 cAMP responsive element binding protein 1 ISO RGD PMID:16891311 RGD:1625706 NCBI chrNW_004936631:3,721,307...3,785,346 JBrowse link
G Esr1 estrogen receptor 1 ISO (PMID:9841876) CAFA PMID:9841876 NCBI chrNW_004936489:4,616,839...4,887,179 JBrowse link
G Ikzf1 IKAROS family zinc finger 1 ISO (MGI:MGI:5317044|PMID:21245044) MGI PMID:21245044 MGI:MGI:5317044 NCBI chrNW_004936686:1,459,582...1,556,478 JBrowse link
G Tp53 tumor protein p53 ISO (PMID:24289924) BHF-UCL PMID:24289924 NCBI chrNW_004936595:919,807...935,367 JBrowse link
G Wnt10b Wnt family member 10B ISO (MGI:MGI:3820325|PMID:19056892) MGI PMID:19056892 MGI:MGI:3820325 NCBI chrNW_004936512:6,768,240...6,774,172 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11998
    metabolic process 7668
      positive regulation of metabolic process 3338
        positive regulation of macromolecule metabolic process 3092
          positive regulation of gene expression 2077
            positive regulation of transcription, DNA-templated 1388
              positive regulation of transcription by RNA polymerase II 1112
                positive regulation of transcription initiation from RNA polymerase II promoter 29
                  positive regulation of RNA polymerase II transcription preinitiation complex assembly 7
Path 2
Term Annotations click to browse term
  biological_process 11998
    metabolic process 7668
      cellular metabolic process 7073
        cellular aromatic compound metabolic process 3755
          nucleobase-containing compound metabolic process 3585
            nucleic acid metabolic process 3298
              RNA metabolic process 2919
                RNA biosynthetic process 2373
                  regulation of RNA biosynthetic process 2292
                    regulation of nucleic acid-templated transcription 2287
                      regulation of transcription, DNA-templated 2279
                        regulation of DNA-templated transcription, initiation 45
                          positive regulation of DNA-templated transcription, initiation 37
                            positive regulation of transcription initiation from RNA polymerase II promoter 29
                              positive regulation of RNA polymerase II transcription preinitiation complex assembly 7
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.