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ONTOLOGY REPORT - ANNOTATIONS


Term:head morphogenesis
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Accession:GO:0060323 term browser browse the term
Definition:The process in which the anatomical structures of the head are generated and organized. The head is the anterior-most division of the body.


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head morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd11 ankyrin repeat domain 11 ISO MGI:3797584 (MGI:3796348|PMID:17986521) RGD PMID:17986521 MGI:3796348 NCBI chr19:55,703,831...55,862,446
Ensembl chr19:55,703,824...55,737,500
JBrowse link
G Atp6ap2 ATPase H+ transporting accessory protein 2 ISO (PMID:20093472) RGD PMID:20093472 NCBI chr  X:11,137,889...11,164,854
Ensembl chr  X:11,136,939...11,164,915
JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase ISO (MGI:5582953|PMID:24733831) RGD PMID:24733831 MGI:5582953 NCBI chr 4:67,389,331...67,520,549
Ensembl chr 4:67,396,192...67,520,356
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO MGI:98955 (MGI:3789532|PMID:18403408) RGD PMID:18403408 MGI:3789532 NCBI chr 1:248,952,896...248,956,579
Ensembl chr 1:248,895,738...248,898,607
JBrowse link
G Flvcr1 FLVCR heme transporter 1 ISO MGI:3776021 (MGI:3775000|PMID:18258918) RGD PMID:18258918 MGI:3775000 NCBI chr13:109,624,167...109,629,609
Ensembl chr13:109,578,074...109,629,482
JBrowse link
G Ihh Indian hedgehog signaling molecule ISO MGI:1934258 (MGI:4999722|PMID:16935278) RGD PMID:16935278 MGI:4999722 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Ssbp3 single stranded DNA binding protein 3 IEA
ISO
GO_REF:0000107
(MGI:3578570|PMID:15857913)
Ensembl
RGD
PMID:15857913 GO_REF:0000107, MGI:3578570 NCBI chr 5:126,511,339...126,649,830
Ensembl chr 5:126,511,350...126,648,661
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 ISO (PMID:17273977) RGD PMID:17273977 NCBI chr 8:62,925,364...62,944,438
Ensembl chr 8:62,925,357...62,944,437
JBrowse link
G Wnt3 Wnt family member 3 ISO MGI:1329040 (MGI:3789532|PMID:18403408) RGD PMID:18403408 MGI:3789532 NCBI chr10:91,830,709...91,874,907
Ensembl chr10:91,830,654...91,874,793
JBrowse link
face morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd11 ankyrin repeat domain 11 ISO (PMID:21782149) RGD PMID:21782149 NCBI chr19:55,703,831...55,862,446
Ensembl chr19:55,703,824...55,737,500
JBrowse link
G Arid5b AT-rich interaction domain 5B ISO MGI:3526852 (MGI:3696608|PMID:17143286) RGD PMID:17143286 MGI:3696608 NCBI chr20:21,713,900...21,881,193
Ensembl chr20:21,564,975...21,880,715
JBrowse link
G Asph aspartate-beta-hydroxylase ISO MGI:2179287 (MGI:2177999|PMID:11773073) RGD PMID:11773073 MGI:2177999 NCBI chr 5:22,577,680...22,799,333
Ensembl chr 5:22,577,675...22,799,349
JBrowse link
G Cdk2ap1 cyclin-dependent kinase 2 associated protein 1 ISO MGI:3512185 (MGI:3837115|PMID:19229340) RGD PMID:19229340 MGI:3837115 NCBI chr12:37,668,369...37,677,067
Ensembl chr12:37,668,369...37,677,063
JBrowse link
G Col1a1 collagen type I alpha 1 chain ISO MGI:97009 (MGI:3710444|PMID:17440987) RGD PMID:17440987 MGI:3710444 NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
JBrowse link
G Crebbp CREB binding protein ISO (MGI:4421646|PMID:19822209) RGD PMID:19822209 MGI:4421646 NCBI chr10:11,590,994...11,721,039
Ensembl chr10:11,595,044...11,721,039
JBrowse link
G Crispld1 cysteine-rich secretory protein LCCL domain containing 1 ISO (PMID:21254358) RGD PMID:21254358 NCBI chr 5:663,750...711,033
Ensembl chr 5:670,754...711,033
JBrowse link
G Crispld2 cysteine-rich secretory protein LCCL domain containing 2 ISO (PMID:21254358) RGD PMID:21254358 NCBI chr19:52,647,038...52,705,118
Ensembl chr19:52,647,070...52,705,131
JBrowse link
G Csrnp1 cysteine and serine rich nuclear protein 1 ISO MGI:3526868 (MGI:3696608|PMID:17143286) RGD PMID:17143286 MGI:3696608 NCBI chr 8:128,659,883...128,673,339
Ensembl chr 8:128,659,868...128,672,284
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO (MGI:3722225|PMID:17699607) RGD PMID:17699607 MGI:3722225 NCBI chr 1:248,952,896...248,956,579
Ensembl chr 1:248,895,738...248,898,607
JBrowse link
G Dlx5 distal-less homeobox 5 IEA
ISO
GO_REF:0000107
MGI:2180474 (MGI:3611627|PMID:16330189)
Ensembl
RGD
PMID:16330189 GO_REF:0000107, MGI:3611627 NCBI chr 4:32,387,741...32,392,085
Ensembl chr 4:32,387,741...32,392,007
JBrowse link
G Ep300 E1A binding protein p300 ISO (MGI:4421646|PMID:19822209) RGD PMID:19822209 MGI:4421646 NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
JBrowse link
G Kat6a lysine acetyltransferase 6A ISO MGI:4418468|MGI:98493 (MGI:5442217|PMID:22921202) RGD PMID:22921202 MGI:5442217 NCBI chr16:73,942,669...74,020,750
Ensembl chr16:73,943,455...74,023,005
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 IEA
ISO
GO_REF:0000107
MGI:1202879 (MGI:3722225|PMID:17699607)
Ensembl
RGD
PMID:17699607 GO_REF:0000107, MGI:3722225 NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
JBrowse link
G Lrp6 LDL receptor related protein 6 IBA
ISO
PMID:21873635
MGI:2156191|MGI:4415718 (MGI:4358010|PMID:19700620), (MGI:4413396|PMID:19653321)
RGD PMID:19653321, PMID:19700620, PMID:21873635 MGI:4358010, MGI:4413396, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Mmp2 matrix metallopeptidase 2 IEA
ISO
GO_REF:0000107
MGI:88467 (MGI:3710444|PMID:17440987)
Ensembl
RGD
PMID:17440987 GO_REF:0000107, MGI:3710444 NCBI chr19:15,542,771...15,570,589
Ensembl chr19:15,542,765...15,570,611
JBrowse link
G Msx1 msh homeobox 1 ISO (PMID:10742093), (PMID:11332647), (PMID:12651933)
MGI:1933766|MGI:97493 (MGI:3611627|PMID:16330189), (MGI:3688967|PMID:11369996), (MGI:4453942|PMID:20123092)
RGD PMID:10742093, PMID:11332647, PMID:11369996, PMID:12651933, PMID:16330189, PMID:20123092 MGI:3611627, MGI:3688967, MGI:4453942 NCBI chr14:77,712,262...77,716,061
Ensembl chr14:77,712,240...77,716,059
JBrowse link
G Nipbl NIPBL, cohesin loading factor ISO (PMID:15146186), (PMID:19242925) RGD PMID:15146186, PMID:19242925 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
G Nog noggin IEA
ISO
GO_REF:0000107
MGI:1862000 (MGI:3640733|PMID:16712836)
Ensembl
RGD
PMID:16712836 GO_REF:0000107, MGI:3640733 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Pax9 paired box 9 IEA
ISO
GO_REF:0000107
MGI:97168 (MGI:4453942|PMID:20123092)
Ensembl
RGD
PMID:20123092 GO_REF:0000107, MGI:4453942 NCBI chr 6:77,607,705...77,624,453
Ensembl chr 6:77,608,624...77,621,719
JBrowse link
G Pdgfra platelet derived growth factor receptor alpha IEA
ISO
GO_REF:0000107
MGI:1926728 (MGI:3696608|PMID:17143286)
Ensembl
RGD
PMID:17143286 GO_REF:0000107, MGI:3696608 NCBI chr14:35,527,926...35,581,130
Ensembl chr14:35,527,927...35,581,031
JBrowse link
G Plekha1 pleckstrin homology domain containing A1 ISO MGI:3526857 (MGI:3696608|PMID:17143286) RGD PMID:17143286 MGI:3696608 NCBI chr 1:201,429,716...201,481,411
Ensembl chr 1:201,429,771...201,480,877
JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 ISO (PMID:11704759) RGD PMID:11704759 NCBI chr12:40,895,515...40,955,999
Ensembl chr12:40,895,515...40,955,999
JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 ISO
IEA
(PMID:20512159)
GO_REF:0000107
RGD
Ensembl
PMID:20512159 GO_REF:0000107 NCBI chr13:44,578,208...44,649,876
Ensembl chr13:44,615,553...44,648,620
JBrowse link
G Rras RAS related ISO (PMID:24705357) RGD PMID:24705357 NCBI chr 1:101,012,822...101,016,720
Ensembl chr 1:101,012,822...101,016,720
JBrowse link
G Schip1 schwannomin interacting protein 1 ISO MGI:3526869 (MGI:3696608|PMID:17143286) RGD PMID:17143286 MGI:3696608 NCBI chr 2:172,312,290...173,087,236
Ensembl chr 2:172,312,298...172,459,165
JBrowse link
G Scx scleraxis bHLH transcription factor ISO (PMID:18498113) RGD PMID:18498113 NCBI chr 7:117,519,075...117,521,093
Ensembl chr 7:117,519,075...117,521,093
JBrowse link
G Sgpl1 sphingosine-1-phosphate lyase 1 ISO MGI:3526851 (MGI:3696608|PMID:17143286) RGD PMID:17143286 MGI:3696608 NCBI chr20:30,699,936...30,769,178
Ensembl chr20:30,699,872...30,749,940
JBrowse link
G Ski SKI proto-oncogene ISO MGI:2177555 (MGI:1095997|PMID:9284043), (MGI:2176418|PMID:11731796) RGD PMID:9284043, PMID:11731796 MGI:1095997, MGI:2176418 NCBI chr 5:172,556,196...172,623,878
Ensembl chr 5:172,559,135...172,623,899
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 ISO
IEA
(PMID:17273977)
GO_REF:0000107
RGD
Ensembl
PMID:17273977 GO_REF:0000107 NCBI chr 8:62,925,364...62,944,438
Ensembl chr 8:62,925,357...62,944,437
JBrowse link
G Tbx1 T-box transcription factor 1 ISS
ISO
GO_REF:0000024
MGI:2179191 (MGI:4822099|PMID:20501333)
UniProt
RGD
PMID:20501333 GO_REF:0000024, MGI:4822099 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO MGI:96770 (MGI:3722225|PMID:17699607) RGD PMID:17699607 MGI:3722225 NCBI chr 1:276,686,911...276,730,517
Ensembl chr 1:276,659,542...276,730,514
Ensembl chr 1:276,659,542...276,730,514
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO MGI:2176682 (MGI:1313057|PMID:9811866) RGD PMID:9811866 MGI:1313057 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO (PMID:18498113) RGD PMID:18498113 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO (PMID:18498113) RGD PMID:18498113 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tgfb3 transforming growth factor, beta 3 ISO
ISS
(PMID:12651933)
GO_REF:0000024
(PMID:18498113)
RGD
AgBase
PMID:12651933, PMID:18498113 GO_REF:0000024 NCBI chr 6:109,913,757...109,936,217
Ensembl chr 6:109,913,757...109,935,533
JBrowse link
G Tiparp TCDD-inducible poly(ADP-ribose) polymerase ISO MGI:3526866 (MGI:3696608|PMID:17143286) RGD PMID:17143286 MGI:3696608 NCBI chr 2:157,316,293...157,342,979
Ensembl chr 2:157,316,266...157,341,469
JBrowse link
G Twist2 twist family bHLH transcription factor 2 ISO MGI:3044412 (MGI:4939992|PMID:20691403), (MGI:4949824|PMID:20574024) RGD PMID:20574024, PMID:20691403 MGI:4939992, MGI:4949824 NCBI chr 9:98,924,134...98,968,510
Ensembl chr 9:98,924,134...98,968,510
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure morphogenesis 2879
        head morphogenesis 44
          face morphogenesis 38
Path 2
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure development 6268
        anatomical structure morphogenesis 2879
          body morphogenesis 60
            head morphogenesis 44
              face morphogenesis 38
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.