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ONTOLOGY REPORT - ANNOTATIONS


Term:cardiac septum morphogenesis
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Accession:GO:0060411 term browser browse the term
Definition:The process in which the anatomical structure of a cardiac septum is generated and organized. A cardiac septum is a partition that separates parts of the heart.
Synonyms:exact_synonym: heart septum morphogenesis
 alt_id: GO:0003280


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cardiac septum morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp5 bone morphogenetic protein 5 ISO UniProtKB:P23359 (MGI:MGI:1332253|PMID:10079236) RGD PMID:10079236 MGI:MGI:1332253 NCBI chr 8:82,669,466...82,950,273
Ensembl chr 8:82,878,941...82,950,273
JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO UniProtKB:P49003 (MGI:MGI:1332253|PMID:10079236) RGD PMID:10079236 MGI:MGI:1332253 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 ISO MGI:MGI:2450311|MGI:MGI:4433295 (MGI:MGI:5694290|PMID:26102480) RGD PMID:26102480 MGI:MGI:5694290 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO MGI:MGI:2179740 (MGI:MGI:2179743|PMID:11694877) RGD PMID:11694877 MGI:MGI:2179743 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Dhrs3 dehydrogenase/reductase 3 ISO MGI:MGI:5007106 (MGI:MGI:5528782|PMID:24005908) RGD PMID:24005908 MGI:MGI:5528782 NCBI chr 5:162,809,090...162,843,385
Ensembl chr 5:162,808,646...162,843,383
JBrowse link
G Dnah11 dynein, axonemal, heavy chain 11 ISO MGI:MGI:4821828 (MGI:MGI:5811184|PMID:27340223) RGD PMID:27340223 MGI:MGI:5811184 NCBI chr 6:145,784,893...146,099,212
Ensembl chr 6:145,785,275...146,099,053
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 ISO (PMID:19586923) RGD PMID:19586923 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 ISO (MGI:MGI:3703467|PMID:17259303) RGD PMID:17259303 MGI:MGI:3703467 NCBI chr 2:95,320,147...95,322,701
Ensembl chr 2:95,320,283...95,322,696
JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 ISO (MGI:MGI:3703467|PMID:17259303) RGD PMID:17259303 MGI:MGI:3703467 NCBI chr 1:29,191,170...29,201,257
Ensembl chr 1:29,191,192...29,201,531
JBrowse link
G Ift88 intraflagellar transport 88 ISO MGI:MGI:3823090 (MGI:MGI:3821634|PMID:19036983) RGD PMID:19036983 MGI:MGI:3821634 NCBI chr15:37,690,417...37,786,855
Ensembl chr15:37,691,345...37,784,924
JBrowse link
G Jag1 jagged canonical Notch ligand 1 ISO
IEA
(MGI:MGI:4359139|PMID:19509466)
GO_REF:0000107
RGD
Ensembl
PMID:19509466 GO_REF:0000107, MGI:MGI:4359139 NCBI chr 3:130,079,361...130,114,781
Ensembl chr 3:130,079,361...130,114,770
JBrowse link
G Mdm2 MDM2 proto-oncogene ISO MGI:MGI:107934|MGI:MGI:98834 (MGI:MGI:5440773|PMID:22821713) RGD PMID:22821713 MGI:MGI:5440773 NCBI chr 7:60,719,060...60,743,618
Ensembl chr 7:60,719,066...60,743,328
JBrowse link
G Mks1 MKS transition zone complex subunit 1 IEA
ISO
GO_REF:0000107
MGI:MGI:4821832 (MGI:MGI:5811184|PMID:27340223)
Ensembl
RGD
PMID:27340223 GO_REF:0000107, MGI:MGI:5811184 NCBI chr10:75,149,814...75,160,481
Ensembl chr10:75,149,814...75,160,480
JBrowse link
G Notch1 notch receptor 1 ISO (MGI:MGI:4947514|PMID:20007915) RGD PMID:20007915 MGI:MGI:4947514 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Tp53 tumor protein p53 ISO MGI:MGI:107934|MGI:MGI:96952 (MGI:MGI:5440773|PMID:22821713) RGD PMID:22821713 MGI:MGI:5440773 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
atrial septum morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr2 bone morphogenetic protein receptor type 2 ISO (MGI:MGI:3851675|PMID:19409885) RGD PMID:19409885 MGI:MGI:3851675 NCBI chr 9:66,568,074...66,683,019
Ensembl chr 9:66,568,074...66,676,494
JBrowse link
G Ccn1 cellular communication network factor 1 ISO
IEA
MGI:MGI:2446577 (MGI:MGI:3761425|PMID:17023674)
GO_REF:0000107
RGD
Ensembl
PMID:17023674 GO_REF:0000107, MGI:MGI:3761425 NCBI chr 2:251,529,354...251,532,312
Ensembl chr 2:251,529,354...251,532,312
JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 ISO MGI:MGI:2179530 (MGI:MGI:1346729|PMID:10521397) RGD PMID:10521397 MGI:MGI:1346729 NCBI chr 9:41,045,352...41,051,979
Ensembl chr 9:41,045,363...41,052,024
JBrowse link
G Gata4 GATA binding protein 4 ISO (PMID:12845333) RGD PMID:12845333 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Gja5 gap junction protein, alpha 5 ISO MGI:MGI:2445238 (MGI:MGI:3639795|PMID:10969038) RGD PMID:10969038 MGI:MGI:3639795 NCBI chr 2:199,162,745...199,184,942
Ensembl chr 2:199,162,745...199,184,939
JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 ISO (MGI:MGI:2386835|PMID:12372254) RGD PMID:12372254 MGI:MGI:2386835 NCBI chr 1:29,191,170...29,201,257
Ensembl chr 1:29,191,192...29,201,531
JBrowse link
G Isl1 ISL LIM homeobox 1 ISO UniProtKB:Q02248 (MGI:MGI:3829137|PMID:17519333) RGD PMID:17519333 MGI:MGI:3829137 NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
JBrowse link
G Nkx2-5 NK2 homeobox 5 IEA
ISO
GO_REF:0000107
(PMID:10587520), (PMID:9651244)
Ensembl
RGD
PMID:9651244, PMID:10587520 GO_REF:0000107 NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764
JBrowse link
G Notch2 notch receptor 2 ISO
IEA
(PMID:16773578)
GO_REF:0000107
RGD
Ensembl
PMID:16773578 GO_REF:0000107 NCBI chr 2:200,187,184...200,320,403
Ensembl chr 2:200,187,179...200,320,215
JBrowse link
G Smo smoothened, frizzled class receptor ISO
IEA
MGI:MGI:102541 (MGI:MGI:5437816|PMID:22898775)
GO_REF:0000107
RGD
Ensembl
PMID:22898775 GO_REF:0000107, MGI:MGI:5437816 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Tbx20 T-box transcription factor 20 ISO (PMID:17668378), (PMID:18834961), (PMID:19762328) RGD PMID:17668378, PMID:18834961, PMID:19762328 NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570
JBrowse link
G Tbx5 T-box transcription factor 5 ISO
IEA
MGI:MGI:108075 (MGI:MGI:5437816|PMID:22898775)
GO_REF:0000107
RGD
Ensembl
PMID:22898775 GO_REF:0000107, MGI:MGI:5437816 NCBI chr12:42,059,688...42,148,226
Ensembl chr12:42,097,626...42,148,146
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO (MGI:MGI:894212|PMID:9217007) RGD PMID:9217007 MGI:MGI:894212 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Zfpm1 zinc finger protein, multitype 1 ISO (MGI:MGI:3583527|PMID:14614148) RGD PMID:14614148 MGI:MGI:3583527 NCBI chr19:55,094,585...55,150,994
Ensembl chr19:55,094,585...55,150,686
JBrowse link
atrial septum primum morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 ISO
IEA
(PMID:19506109)
GO_REF:0000107
(MGI:MGI:3610266|PMID:16140292)
RGD
Ensembl
PMID:16140292, PMID:19506109 GO_REF:0000107, MGI:MGI:3610266 NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
JBrowse link
G Gata4 GATA binding protein 4 ISO (MGI:MGI:3769320|PMID:17643447) RGD PMID:17643447 MGI:MGI:3769320 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Nsd2 nuclear receptor binding SET domain protein 2 ISO MGI:MGI:3851507 (MGI:MGI:3850584|PMID:19483677) RGD PMID:19483677 MGI:MGI:3850584 NCBI chr14:82,119,210...82,196,501
Ensembl chr14:82,119,210...82,171,480
JBrowse link
G Sox4 SRY-box transcription factor 4 ISO (MGI:MGI:3603061|PMID:16109771) RGD PMID:16109771 MGI:MGI:3603061 NCBI chr17:37,615,022...37,619,728 JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO (MGI:MGI:3609313|PMID:11390347) RGD PMID:11390347 MGI:MGI:3609313 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
atrial septum secundum morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata4 GATA binding protein 4 ISO (PMID:20347099) RGD PMID:20347099 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Nsd2 nuclear receptor binding SET domain protein 2 ISO MGI:MGI:3851507 (MGI:MGI:3850584|PMID:19483677) RGD PMID:19483677 MGI:MGI:3850584 NCBI chr14:82,119,210...82,196,501
Ensembl chr14:82,119,210...82,171,480
JBrowse link
foramen ovale closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gja5 gap junction protein, alpha 5 ISO MGI:MGI:2445238 (MGI:MGI:3639795|PMID:10969038) RGD PMID:10969038 MGI:MGI:3639795 NCBI chr 2:199,162,745...199,184,942
Ensembl chr 2:199,162,745...199,184,939
JBrowse link
G Tbx20 T-box transcription factor 20 ISO (PMID:19762328) RGD PMID:19762328 NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570
JBrowse link
membranous septum morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 IEA
ISO
GO_REF:0000107
(MGI:MGI:3039210|PMID:15070745), (MGI:MGI:3814273|PMID:18924235)
Ensembl
RGD
PMID:15070745, PMID:18924235 GO_REF:0000107, MGI:MGI:3039210, MGI:MGI:3814273 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:MGI:2153818 (MGI:MGI:3653131|PMID:16687131) RGD PMID:16687131 MGI:MGI:3653131 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Fzd1 frizzled class receptor 1 ISO
IEA
MGI:MGI:1888513|MGI:MGI:2135272 (MGI:MGI:4837757|PMID:20940229)
GO_REF:0000107
RGD
Ensembl
PMID:20940229 GO_REF:0000107, MGI:MGI:4837757 NCBI chr 4:26,470,864...26,475,262
Ensembl chr 4:26,470,864...26,475,262
JBrowse link
G Fzd2 frizzled class receptor 2 ISO
IEA
MGI:MGI:1196625|MGI:MGI:2135272 (MGI:MGI:4837757|PMID:20940229)
GO_REF:0000107
RGD
Ensembl
PMID:20940229 GO_REF:0000107, MGI:MGI:4837757 NCBI chr10:90,550,147...90,552,057
Ensembl chr10:90,550,147...90,552,057
JBrowse link
G Id2 inhibitor of DNA binding 2 ISO (MGI:MGI:4946551|PMID:21330551) RGD PMID:21330551 MGI:MGI:4946551 NCBI chr 6:44,360,077...44,361,908
Ensembl chr 6:44,348,501...44,363,915
JBrowse link
G Nog noggin ISO
IEA
(MGI:MGI:3783944|PMID:17218603)
GO_REF:0000107
RGD
Ensembl
PMID:17218603 GO_REF:0000107, MGI:MGI:3783944 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Nsd2 nuclear receptor binding SET domain protein 2 ISO MGI:MGI:3851507 (MGI:MGI:3850584|PMID:19483677) RGD PMID:19483677 MGI:MGI:3850584 NCBI chr14:82,119,210...82,196,501
Ensembl chr14:82,119,210...82,171,480
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO (MGI:MGI:3609313|PMID:11390347) RGD PMID:11390347 MGI:MGI:3609313 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 ISO (MGI:MGI:4821522|PMID:20652948) RGD PMID:20652948 MGI:MGI:4821522 NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 ISO MGI:MGI:1196625|MGI:MGI:1888513 (MGI:MGI:4837757|PMID:20940229) RGD PMID:20940229 MGI:MGI:4837757 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
muscular septum morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 NOT ISO (MGI:MGI:3814273|PMID:18924235) RGD PMID:18924235 MGI:MGI:3814273 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Fzd1 frizzled class receptor 1 ISO
IEA
MGI:MGI:1888513|MGI:MGI:2135272 (MGI:MGI:4837757|PMID:20940229)
GO_REF:0000107
RGD
Ensembl
PMID:20940229 GO_REF:0000107, MGI:MGI:4837757 NCBI chr 4:26,470,864...26,475,262
Ensembl chr 4:26,470,864...26,475,262
JBrowse link
G Fzd2 frizzled class receptor 2 ISO
IEA
MGI:MGI:1196625|MGI:MGI:2135272 (MGI:MGI:4837757|PMID:20940229)
GO_REF:0000107
RGD
Ensembl
PMID:20940229 GO_REF:0000107, MGI:MGI:4837757 NCBI chr10:90,550,147...90,552,057
Ensembl chr10:90,550,147...90,552,057
JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 ISO (MGI:MGI:2386835|PMID:12372254) RGD PMID:12372254 MGI:MGI:2386835 NCBI chr 1:29,191,170...29,201,257
Ensembl chr 1:29,191,192...29,201,531
JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 ISO (MGI:MGI:2663364|PMID:12773577) RGD PMID:12773577 MGI:MGI:2663364 NCBI chr14:3,506,416...3,680,508
Ensembl chr14:3,506,339...3,682,545
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 ISO MGI:MGI:1196625|MGI:MGI:1888513 (MGI:MGI:4837757|PMID:20940229) RGD PMID:20940229 MGI:MGI:4837757 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
negative regulation of planar cell polarity pathway involved in ventricular septum morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 ISO MGI:MGI:98958 (MGI:MGI:4830282|PMID:19056682) RGD PMID:19056682 MGI:MGI:4830282 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
outflow tract septum morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 NOT ISO (MGI:MGI:3610266|PMID:16140292) RGD PMID:16140292 MGI:MGI:3610266 NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
JBrowse link
G Bmp4 bone morphogenetic protein 4 IEA
ISO
GO_REF:0000107
(MGI:MGI:3039210|PMID:15070745), (MGI:MGI:3814273|PMID:18924235)
Ensembl
RGD
PMID:15070745, PMID:18924235 GO_REF:0000107, MGI:MGI:3039210, MGI:MGI:3814273 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO (MGI:MGI:3040576|PMID:15073157) RGD PMID:15073157 MGI:MGI:3040576 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 NOT ISO (MGI:MGI:2429424|PMID:12441304)
(MGI:MGI:3851675|PMID:19409885)
RGD PMID:12441304, PMID:19409885 MGI:MGI:2429424, MGI:MGI:3851675 NCBI chr 9:66,568,074...66,683,019
Ensembl chr 9:66,568,074...66,676,494
JBrowse link
G Dvl3 dishevelled segment polarity protein 3 ISO MGI:MGI:3831892 (MGI:MGI:3821448|PMID:19008950) RGD PMID:19008950 MGI:MGI:3821448 NCBI chr11:84,051,177...84,068,479
Ensembl chr11:84,051,078...84,068,302
JBrowse link
G Eng endoglin ISO UniProtKB:P97471 (MGI:MGI:3721185|PMID:17628518) RGD PMID:17628518 MGI:MGI:3721185 NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
JBrowse link
G Fgf8 fibroblast growth factor 8 ISO
ISS
UniProtKB:P70323 (MGI:MGI:5285152|PMID:20807544)
GO_REF:0000024
RGD
UniProt
PMID:20807544 GO_REF:0000024, MGI:MGI:5285152 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:MGI:2153818 (MGI:MGI:3653131|PMID:16687131) RGD PMID:16687131 MGI:MGI:3653131 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Gata6 GATA binding protein 6 ISO
IEA
(PMID:19666519)
GO_REF:0000107
RGD
Ensembl
PMID:19666519 GO_REF:0000107 NCBI chr18:2,415,821...2,447,087
Ensembl chr18:2,416,552...2,446,338
JBrowse link
G Isl1 ISL LIM homeobox 1 ISO UniProtKB:Q02248 (MGI:MGI:3829137|PMID:17519333) RGD PMID:17519333 MGI:MGI:3829137 NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
JBrowse link
G Lrp2 LDL receptor related protein 2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5770180|PMID:26822476)
Ensembl
UniProt
RGD
PMID:26822476 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5770180 NCBI chr 3:55,665,153...55,822,484
Ensembl chr 3:55,665,145...55,822,551
JBrowse link
G Msx2 msh homeobox 2 ISO
IEA
MGI:MGI:97168 (MGI:MGI:3720542|PMID:17601530)
GO_REF:0000107
RGD
Ensembl
PMID:17601530 GO_REF:0000107, MGI:MGI:3720542 NCBI chr17:11,683,862...11,689,527
Ensembl chr17:11,683,862...11,689,527
JBrowse link
G Nkx2-5 NK2 homeobox 5 ISO
IEA
(PMID:20807224)
GO_REF:0000107
RGD
Ensembl
PMID:20807224 GO_REF:0000107 NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764
JBrowse link
G Nrp1 neuropilin 1 ISO (MGI:MGI:5693177|PMID:26053665) RGD PMID:26053665 MGI:MGI:5693177 NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
JBrowse link
G Nrp2 neuropilin 2 ISO UniProtKB:Q62181 (MGI:MGI:5693177|PMID:26053665) RGD PMID:26053665 MGI:MGI:5693177 NCBI chr 9:69,496,875...69,609,802
Ensembl chr 9:69,497,121...69,612,087
JBrowse link
G Parva parvin, alpha IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:4368016|PMID:19798050)
Ensembl
UniProt
RGD
PMID:19798050 GO_REF:0000024, GO_REF:0000107, MGI:MGI:4368016 NCBI chr 1:177,249,302...177,408,160
Ensembl chr 1:177,249,226...177,408,205
JBrowse link
G Rara retinoic acid receptor, alpha ISO MGI:MGI:97857 (MGI:MGI:1270092|PMID:9659935) RGD PMID:9659935 MGI:MGI:1270092 NCBI chr10:86,838,819...86,884,224
Ensembl chr10:86,860,685...86,884,210
JBrowse link
G Rarb retinoic acid receptor, beta ISO MGI:MGI:97856 (MGI:MGI:1270092|PMID:9659935) RGD PMID:9659935 MGI:MGI:1270092 NCBI chr15:9,915,223...10,262,599
Ensembl chr15:10,120,206...10,262,599
JBrowse link
G Robo1 roundabout guidance receptor 1 ISO UniProtKB:Q7TPD3 (MGI:MGI:5913048|PMID:25691540) RGD PMID:25691540 MGI:MGI:5913048 NCBI chr11:9,079,291...10,146,302
Ensembl chr11:9,642,365...10,143,317
JBrowse link
G Robo2 roundabout guidance receptor 2 ISO UniProtKB:O89026 (MGI:MGI:5913048|PMID:25691540) RGD PMID:25691540 MGI:MGI:5913048 NCBI chr11:11,062,866...12,618,793
Ensembl chr11:11,062,790...11,585,765
JBrowse link
G Sema3c semaphorin 3C ISO UniProtKB:O35375|UniProtKB:P97333 (MGI:MGI:5693177|PMID:26053665) RGD PMID:26053665 MGI:MGI:5693177 NCBI chr 4:14,318,276...14,490,438
Ensembl chr 4:14,318,274...14,490,446
JBrowse link
G Smad4 SMAD family member 4 ISO
IEA
UniProtKB:Q63961 (MGI:MGI:3721185|PMID:17628518)
GO_REF:0000107
RGD
Ensembl
PMID:17628518 GO_REF:0000107, MGI:MGI:3721185 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
G Smad6 SMAD family member 6 ISO (MGI:MGI:1352979|PMID:10655064) RGD PMID:10655064 MGI:MGI:1352979 NCBI chr 8:68,897,746...68,967,221
Ensembl chr 8:68,898,296...68,966,108
JBrowse link
G Tbx1 T-box transcription factor 1 ISO
ISS
(MGI:MGI:5285152|PMID:20807544)
GO_REF:0000024
RGD
UniProt
PMID:20807544 GO_REF:0000024, MGI:MGI:5285152 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Tbx2 T-box transcription factor 2 ISO (MGI:MGI:3487212|PMID:15459098) RGD PMID:15459098 MGI:MGI:3487212 NCBI chr10:73,278,932...73,290,764
Ensembl chr10:73,279,119...73,289,921
JBrowse link
G Tbx20 T-box transcription factor 20 ISO (MGI:MGI:3604925|PMID:15843409)
(PMID:18275040), (PMID:18834961)
RGD PMID:15843409, PMID:18275040, PMID:18834961 MGI:MGI:3604925 NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO (MGI:MGI:3609313|PMID:11390347), (MGI:MGI:894212|PMID:9217007) RGD PMID:9217007, PMID:11390347 MGI:MGI:3609313, MGI:MGI:894212 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 ISO (MGI:MGI:4821522|PMID:20652948) RGD PMID:20652948 MGI:MGI:4821522 NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
JBrowse link
G Zfpm2 zinc finger protein, multitype 2 ISO (PMID:20807224) RGD PMID:20807224 NCBI chr 7:79,471,277...79,964,405
Ensembl chr 7:79,638,046...79,964,405
JBrowse link
planar cell polarity pathway involved in ventricular septum morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt5a Wnt family member 5A ISO
IEA
MGI:MGI:1857617 (MGI:MGI:4830282|PMID:19056682)
GO_REF:0000107
RGD
Ensembl
PMID:19056682 GO_REF:0000107, MGI:MGI:4830282 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
ventricular septum morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 ISO
IEA
(MGI:MGI:3610266|PMID:16140292)
GO_REF:0000107
RGD
Ensembl
PMID:16140292 GO_REF:0000107, MGI:MGI:3610266 NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 ISO (MGI:MGI:2429424|PMID:12441304), (MGI:MGI:3851675|PMID:19409885) RGD PMID:12441304, PMID:19409885 MGI:MGI:2429424, MGI:MGI:3851675 NCBI chr 9:66,568,074...66,683,019
Ensembl chr 9:66,568,074...66,676,494
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO (MGI:MGI:3054669|PMID:15475956) RGD PMID:15475956 MGI:MGI:3054669 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Egln1 egl-9 family hypoxia-inducible factor 1 ISO MGI:MGI:3690045 (MGI:MGI:3689683|PMID:16966370) RGD PMID:16966370 MGI:MGI:3689683 NCBI chr19:57,660,194...57,701,158
Ensembl chr19:57,662,278...57,699,113
JBrowse link
G Fgfrl1 fibroblast growth factor receptor-like 1 ISO MGI:MGI:3849002 (MGI:MGI:3848851|PMID:19383940) RGD PMID:19383940 MGI:MGI:3848851 NCBI chr14:2,020,110...2,032,169
Ensembl chr14:2,018,500...2,032,593
JBrowse link
G Fzd1 frizzled class receptor 1 ISO MGI:MGI:1888513 (MGI:MGI:4837757|PMID:20940229) RGD PMID:20940229 MGI:MGI:4837757 NCBI chr 4:26,470,864...26,475,262
Ensembl chr 4:26,470,864...26,475,262
JBrowse link
G Fzd2 frizzled class receptor 2 ISO MGI:MGI:1196625 (MGI:MGI:4837757|PMID:20940229) RGD PMID:20940229 MGI:MGI:4837757 NCBI chr10:90,550,147...90,552,057
Ensembl chr10:90,550,147...90,552,057
JBrowse link
G Gja5 gap junction protein, alpha 5 ISO MGI:MGI:2445238 (MGI:MGI:3639795|PMID:10969038) RGD PMID:10969038 MGI:MGI:3639795 NCBI chr 2:199,162,745...199,184,942
Ensembl chr 2:199,162,745...199,184,939
JBrowse link
G Hes1 hes family bHLH transcription factor 1 ISO
IEA
(MGI:MGI:4354447|PMID:19609448)
GO_REF:0000107
RGD
Ensembl
PMID:19609448 GO_REF:0000107, MGI:MGI:4354447 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 ISO UniProtKB:Q9DBX7 (MGI:MGI:3783952|PMID:17303760) RGD PMID:17303760 MGI:MGI:3783952 NCBI chr 2:95,320,147...95,322,701
Ensembl chr 2:95,320,283...95,322,696
JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 ISO (MGI:MGI:2386835|PMID:12372254) RGD PMID:12372254 MGI:MGI:2386835 NCBI chr 1:29,191,170...29,201,257
Ensembl chr 1:29,191,192...29,201,531
JBrowse link
G Heyl hes-related family bHLH transcription factor with YRPW motif-like ISO UniProtKB:Q9WV93 (MGI:MGI:3783952|PMID:17303760) RGD PMID:17303760 MGI:MGI:3783952 NCBI chr 5:140,923,914...140,940,905
Ensembl chr 5:140,923,914...140,940,905
JBrowse link
G Mir17 microRNA 17 ISO MGI:MGI:2676844|MGI:MGI:2676872|MGI:MGI:3618743|MGI:MGI:3629917|MGI:MGI:3629918 (MGI:MGI:3789916|PMID:18329372) RGD PMID:18329372 MGI:MGI:3789916 NCBI chr15:100,179,879...100,179,962
Ensembl chr15:100,179,879...100,179,962
JBrowse link
G Mir18a microRNA 18a ISO MGI:MGI:2676872|MGI:MGI:3618743|MGI:MGI:3619065|MGI:MGI:3629917|MGI:MGI:3629918 (MGI:MGI:3789916|PMID:18329372) RGD PMID:18329372 MGI:MGI:3789916 NCBI chr15:100,180,015...100,180,110
Ensembl chr15:100,180,015...100,180,110
JBrowse link
G Mir19a microRNA 19a ISO MGI:MGI:2676844|MGI:MGI:2676872|MGI:MGI:3619065|MGI:MGI:3629917|MGI:MGI:3629918 (MGI:MGI:3789916|PMID:18329372) RGD PMID:18329372 MGI:MGI:3789916 NCBI chr15:100,180,162...100,180,243
Ensembl chr15:100,180,162...100,180,243
JBrowse link
G Mir19b1 microRNA 19b-1 ISO MGI:MGI:2676844|MGI:MGI:2676872|MGI:MGI:3618743|MGI:MGI:3619065|MGI:MGI:3629918 (MGI:MGI:3789916|PMID:18329372) RGD PMID:18329372 MGI:MGI:3789916 NCBI chr15:100,180,464...100,180,550
Ensembl chr15:100,180,464...100,180,550
JBrowse link
G Mir20a microRNA 20a ISO MGI:MGI:2676844|MGI:MGI:3618743|MGI:MGI:3619065|MGI:MGI:3629917|MGI:MGI:3629918 (MGI:MGI:3789916|PMID:18329372) RGD PMID:18329372 MGI:MGI:3789916 NCBI chr15:100,180,334...100,180,418
Ensembl chr15:100,180,334...100,180,418
JBrowse link
G Mir92a1 microRNA 92a-1 ISO MGI:MGI:2676844|MGI:MGI:2676872|MGI:MGI:3618743|MGI:MGI:3619065|MGI:MGI:3629917 (MGI:MGI:3789916|PMID:18329372) RGD PMID:18329372 MGI:MGI:3789916 NCBI chr15:100,180,586...100,180,663
Ensembl chr15:100,180,586...100,180,663
JBrowse link
G Nfatc1 nuclear factor of activated T-cells 1 ISO MGI:MGI:2181762 (MGI:MGI:1197815|PMID:9515964) RGD PMID:9515964 MGI:MGI:1197815 NCBI chr18:77,203,517...77,322,690
Ensembl chr18:77,203,525...77,322,690
JBrowse link
G Nkx2-5 NK2 homeobox 5 IEA
ISO
GO_REF:0000107
(PMID:10587520), (PMID:20807224)
Ensembl
RGD
PMID:10587520, PMID:20807224 GO_REF:0000107 NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764
JBrowse link
G Nog noggin ISO (MGI:MGI:3783944|PMID:17218603) RGD PMID:17218603 MGI:MGI:3783944 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Nos3 nitric oxide synthase 3 IEA
ISO
GO_REF:0000107
UniProtKB:Q01705 (MGI:MGI:6158784|PMID:27107132)
Ensembl
RGD
PMID:27107132 GO_REF:0000107, MGI:MGI:6158784 NCBI chr 4:7,321,908...7,342,404
Ensembl chr 4:7,320,668...7,342,410
JBrowse link
G Notch1 notch receptor 1 ISO (PMID:16025100)
UniProtKB:P70313 (MGI:MGI:6158728|PMID:26491108), (MGI:MGI:6158784|PMID:27107132)
RGD PMID:16025100, PMID:26491108, PMID:27107132 MGI:MGI:6158728, MGI:MGI:6158784 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Pitx2 paired-like homeodomain 2 ISO MGI:MGI:1857844|MGI:MGI:2386742 (MGI:MGI:3841866|PMID:18292603) RGD PMID:18292603 MGI:MGI:3841866 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
G Prox1 prospero homeobox 1 ISO (MGI:MGI:3830437|PMID:19091769) RGD PMID:19091769 MGI:MGI:3830437 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
G Rbm15 RNA binding motif protein 15 ISO MGI:MGI:2656539|MGI:MGI:3706994 (MGI:MGI:3833189|PMID:18981216) RGD PMID:18981216 MGI:MGI:3833189 NCBI chr 2:210,079,678...210,090,200
Ensembl chr 2:210,081,770...210,088,949
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region ISO (MGI:MGI:6158728|PMID:26491108) RGD PMID:26491108 MGI:MGI:6158728 NCBI chr14:59,657,738...59,865,427
Ensembl chr14:59,658,935...59,735,450
JBrowse link
G Robo1 roundabout guidance receptor 1 ISO UniProtKB:Q7TPD3 (MGI:MGI:5913048|PMID:25691540) RGD PMID:25691540 MGI:MGI:5913048 NCBI chr11:9,079,291...10,146,302
Ensembl chr11:9,642,365...10,143,317
JBrowse link
G Robo2 roundabout guidance receptor 2 ISO UniProtKB:O89026 (MGI:MGI:5913048|PMID:25691540) RGD PMID:25691540 MGI:MGI:5913048 NCBI chr11:11,062,866...12,618,793
Ensembl chr11:11,062,790...11,585,765
JBrowse link
G Sav1 salvador family WW domain containing protein 1 ISO MGI:MGI:2654594|MGI:MGI:4430538 (MGI:MGI:4948149|PMID:21512031) RGD PMID:21512031 MGI:MGI:4948149 NCBI chr 6:92,376,470...92,398,678
Ensembl chr 6:92,376,093...92,398,525
JBrowse link
G Slit2 slit guidance ligand 2 ISO (MGI:MGI:5913048|PMID:25691540) RGD PMID:25691540 MGI:MGI:5913048 NCBI chr14:66,831,848...67,171,491
Ensembl chr14:66,831,848...67,170,361
JBrowse link
G Slit3 slit guidance ligand 3 IEA
ISO
GO_REF:0000107
(MGI:MGI:5913048|PMID:25691540)
Ensembl
RGD
PMID:25691540 GO_REF:0000107, MGI:MGI:5913048 NCBI chr10:19,924,200...20,517,918
Ensembl chr10:20,320,878...20,518,518
JBrowse link
G Smad4 SMAD family member 4 ISO
IEA
(MGI:MGI:3689643|PMID:16151019)
GO_REF:0000107
RGD
Ensembl
PMID:16151019 GO_REF:0000107, MGI:MGI:3689643 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
G Smad7 SMAD family member 7 ISO
IEA
(MGI:MGI:3836072|PMID:18952608)
GO_REF:0000107
RGD
Ensembl
PMID:18952608 GO_REF:0000107, MGI:MGI:3836072 NCBI chr18:71,395,830...71,424,164
Ensembl chr18:71,395,830...71,424,157
JBrowse link
G Sox11 SRY-box transcription factor 11 ISO
ISS
(MGI:MGI:3052265|PMID:15254231)
GO_REF:0000024
RGD
UniProt
PMID:15254231 GO_REF:0000024, MGI:MGI:3052265 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
G Sox4 SRY-box transcription factor 4 ISO (MGI:MGI:3603061|PMID:16109771) RGD PMID:16109771 MGI:MGI:3603061 NCBI chr17:37,615,022...37,619,728 JBrowse link
G Tbx3 T-box transcription factor 3 ISO MGI:MGI:3710254 (MGI:MGI:3847383|PMID:18467625) RGD PMID:18467625 MGI:MGI:3847383 NCBI chr12:42,479,518...42,494,588
Ensembl chr12:42,480,560...42,492,526
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO (MGI:MGI:894212|PMID:9217007) RGD PMID:9217007 MGI:MGI:894212 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 ISO (MGI:MGI:3820811|PMID:18718461) RGD PMID:18718461 MGI:MGI:3820811 NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 ISO (MGI:MGI:3801267|PMID:17050629) RGD PMID:17050629 MGI:MGI:3801267 NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 ISO (MGI:MGI:3818140|PMID:17704211) RGD PMID:17704211 MGI:MGI:3818140 NCBI chr14:3,506,416...3,680,508
Ensembl chr14:3,506,339...3,682,545
JBrowse link
G Wnt11 Wnt family member 11 ISO MGI:MGI:2665014 (MGI:MGI:3759355|PMID:17767158) RGD PMID:17767158 MGI:MGI:3759355 NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756
JBrowse link
G Zfpm1 zinc finger protein, multitype 1 ISO (MGI:MGI:3583527|PMID:14614148) RGD PMID:14614148 MGI:MGI:3583527 NCBI chr19:55,094,585...55,150,994
Ensembl chr19:55,094,585...55,150,686
JBrowse link
G Zfpm2 zinc finger protein, multitype 2 ISO (PMID:20807224) RGD PMID:20807224 NCBI chr 7:79,471,277...79,964,405
Ensembl chr 7:79,638,046...79,964,405
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure morphogenesis 2877
        cardiac septum morphogenesis 86
          atrial septum morphogenesis + 17
          endocardial cushion to mesenchymal transition involved in heart chamber septation 0
          foramen ovale closure 2
          outflow tract septum morphogenesis 29
          ventricular septum morphogenesis + 51
Path 2
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure development 6269
        multicellular organism development 5744
          system development 5280
            animal organ development 4035
              heart development 687
                cardiac chamber development 198
                  cardiac septum development 129
                    cardiac septum morphogenesis 86
                      atrial septum morphogenesis + 17
                      endocardial cushion to mesenchymal transition involved in heart chamber septation 0
                      foramen ovale closure 2
                      outflow tract septum morphogenesis 29
                      ventricular septum morphogenesis + 51
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.