Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:trachea development
go back to main search page
Accession:GO:0060438 term browser browse the term
Definition:The process whose specific outcome is the progression of a trachea over time, from its formation to the mature structure. The trachea is the portion of the airway that attaches to the bronchi as it branches.


show annotations for term's descendants           Sort by:
 
trachea development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ano1 anoctamin 1 ISO (MGI:MGI:3805598|PMID:18585372) RGD PMID:18585372 MGI:MGI:3805598 NCBI chr 1:217,754,349...217,902,540
Ensembl chr 1:217,754,336...217,902,473
JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO (PMID:8674409) RGD PMID:8674409 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Foxf1 forkhead box F1 ISO MGI:MGI:1929432 (MGI:MGI:2135612|PMID:11493558)
(PMID:19500772)
RGD PMID:11493558, PMID:19500772 MGI:MGI:2135612 NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
JBrowse link
G Hydin Hydin, axonemal central pair apparatus protein ISO MGI:MGI:1856913 (MGI:MGI:3793384|PMID:18250199) RGD PMID:18250199 MGI:MGI:3793384 NCBI chr19:41,036,507...41,379,634
Ensembl chr19:41,036,510...41,379,588
JBrowse link
G Shh sonic hedgehog signaling molecule ISO MGI:MGI:1857796 (MGI:MGI:1277744|PMID:9731532) RGD PMID:9731532 MGI:MGI:1277744 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
trachea cartilage development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rara retinoic acid receptor, alpha ISO MGI:MGI:1857622 (MGI:MGI:1096258|PMID:9376317) RGD PMID:9376317 MGI:MGI:1096258 NCBI chr10:86,838,819...86,884,224
Ensembl chr10:86,860,685...86,884,210
JBrowse link
G Rarg retinoic acid receptor, gamma ISO MGI:MGI:1931079|MGI:MGI:1932114|MGI:MGI:2445724 (MGI:MGI:1096258|PMID:9376317), (MGI:MGI:60925|PMID:8388780) RGD PMID:8388780, PMID:9376317 MGI:MGI:1096258, MGI:MGI:60925 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO MGI:MGI:2429649 (MGI:MGI:5524169|PMID:24218621) RGD PMID:24218621 MGI:MGI:5524169 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Srf serum response factor ISO MGI:MGI:3522206 (MGI:MGI:5524169|PMID:24218621) RGD PMID:24218621 MGI:MGI:5524169 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
trachea cartilage morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa5 homeo box A5 ISO MGI:MGI:2150397 (MGI:MGI:1195049|PMID:9441679) RGD PMID:9441679 MGI:MGI:1195049
G Lrp6 LDL receptor related protein 6 ISO
IBA
MGI:MGI:1922667 (MGI:MGI:3774879|PMID:18256198)
PMID:21873635
RGD PMID:18256198, PMID:21873635 MGI:MGI:3774879, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Rspo2 R-spondin 2 ISO MGI:MGI:1298218 (MGI:MGI:3774879|PMID:18256198) RGD PMID:18256198 MGI:MGI:3774879 NCBI chr 7:81,919,911...82,059,659
Ensembl chr 7:81,924,050...82,059,789
JBrowse link
G Wnt7b Wnt family member 7B ISO MGI:MGI:3793280 (MGI:MGI:3788965|PMID:18367557) RGD PMID:18367557 MGI:MGI:3788965 NCBI chr 7:126,423,418...126,465,724
Ensembl chr 7:126,420,656...126,465,723
JBrowse link
trachea formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 ISO
IEA
MGI:MGI:3797048 (MGI:MGI:3820452|PMID:18692041)
GO_REF:0000107
RGD
Ensembl
PMID:18692041 GO_REF:0000107, MGI:MGI:3820452 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Ctnnb1 catenin beta 1 ISO
IEA
MGI:MGI:2148569 (MGI:MGI:4361775|PMID:19805295)
GO_REF:0000107
RGD
Ensembl
PMID:19805295 GO_REF:0000107, MGI:MGI:4361775 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 ISO
IEA
MGI:MGI:1346867 (MGI:MGI:5588044|PMID:25100655)
GO_REF:0000107
RGD
Ensembl
PMID:25100655 GO_REF:0000107, MGI:MGI:5588044 NCBI chr 8:69,134,218...69,722,573
Ensembl chr 8:69,134,223...69,164,758
JBrowse link
G Map2k2 mitogen activated protein kinase kinase 2 ISO MGI:MGI:1346866 (MGI:MGI:5588044|PMID:25100655) RGD PMID:25100655 MGI:MGI:5588044 NCBI chr 7:11,458,971...11,478,520
Ensembl chr 7:11,458,967...11,478,489
JBrowse link
G Mapk1 mitogen activated protein kinase 1 ISO MGI:MGI:1346859 (MGI:MGI:5588044|PMID:25100655) RGD PMID:25100655 MGI:MGI:5588044 NCBI chr11:88,203,863...88,273,301
Ensembl chr11:88,211,599...88,273,254
JBrowse link
G Mapk3 mitogen activated protein kinase 3 ISO MGI:MGI:1346858 (MGI:MGI:5588044|PMID:25100655) RGD PMID:25100655 MGI:MGI:5588044 NCBI chr 1:198,192,773...198,198,975
Ensembl chr 1:198,192,773...198,198,975
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 ISO MGI:MGI:2384513 (MGI:MGI:3829327|PMID:18990706) RGD PMID:18990706 MGI:MGI:3829327 NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
JBrowse link
trachea gland development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eda ectodysplasin-A ISO MGI:MGI:1856197 (MGI:MGI:3703377|PMID:15973734) RGD PMID:15973734 MGI:MGI:3703377 NCBI chr  X:69,730,123...70,222,693
Ensembl chr  X:69,730,242...70,220,329
JBrowse link
G Edaradd EDAR-associated death domain ISO MGI:MGI:1856832 (MGI:MGI:3703377|PMID:15973734) RGD PMID:15973734 MGI:MGI:3703377 NCBI chr17:90,802,280...90,843,476
Ensembl chr17:90,802,393...90,843,485
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 ISO
IEA
MGI:MGI:1926601 (MGI:MGI:1345559|PMID:10498680)
GO_REF:0000107
RGD
Ensembl
PMID:10498680 GO_REF:0000107, MGI:MGI:1345559 NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
JBrowse link
trachea morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 ISO MGI:MGI:2148567 (MGI:MGI:3773938|PMID:18231602), (MGI:MGI:3820452|PMID:18692041) RGD PMID:18231602, PMID:18692041 MGI:MGI:3773938, MGI:MGI:3820452 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Hoxa5 homeo box A5 ISO MGI:MGI:2150397 (MGI:MGI:1195049|PMID:9441679), (MGI:MGI:3606710|PMID:15295088) RGD PMID:9441679, PMID:15295088 MGI:MGI:1195049, MGI:MGI:3606710
G Shh sonic hedgehog signaling molecule ISO
IEA
MGI:MGI:1857796 (MGI:MGI:1277744|PMID:9731532)
GO_REF:0000107
RGD
Ensembl
PMID:9731532 GO_REF:0000107, MGI:MGI:1277744 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 ISO MGI:MGI:2384513 (MGI:MGI:3829327|PMID:18990706) RGD PMID:18990706 MGI:MGI:3829327 NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        animal organ development 4027
          trachea development 22
            trachea cartilage development + 8
            trachea morphogenesis + 12
            trachea submucosa development + 3
Path 2
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        multicellular organism development 5735
          system development 5272
            animal organ development 4027
              trachea development 22
                trachea cartilage development + 8
                trachea morphogenesis + 12
                trachea submucosa development + 3
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.