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ONTOLOGY REPORT - ANNOTATIONS


Term:mammary gland duct morphogenesis
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Accession:GO:0060603 term browser browse the term
Definition:The process in which anatomical structures of the mammary ducts are generated and organized. Mammary ducts are epithelial tubes that transport milk.


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mammary gland duct morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 ISO (MGI:2151643|PMID:11783999) MGI PMID:11783999 MGI:2151643 NCBI chrNW_004955459:8,892,917...9,124,672
Ensembl chrNW_004955459:8,892,869...9,118,499
JBrowse link
G Lrp5 LDL receptor related protein 5 ISO (MGI:3849913|PMID:19503830) MGI PMID:19503830 MGI:3849913 NCBI chrNW_004955422:17,394,371...17,475,244
Ensembl chrNW_004955422:17,394,371...17,505,763
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO (MGI:3849913|PMID:19503830) MGI PMID:19503830 MGI:3849913 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650
JBrowse link
G Nr3c1 nuclear receptor subfamily 3 group C member 1 ISO (MGI:3758540|PMID:12198239) MGI PMID:12198239 MGI:3758540 NCBI chrNW_004955415:10,494,704...10,585,778
Ensembl chrNW_004955415:10,494,640...10,586,221
JBrowse link
G Ntn1 netrin 1 ISO (MGI:3617129|PMID:16439476) MGI PMID:16439476 MGI:3617129 NCBI chrNW_004955467:7,795,175...7,991,597
Ensembl chrNW_004955467:7,794,735...7,991,695
JBrowse link
G Ptch1 patched 1 ISO (MGI:1346456|PMID:10529434) MGI PMID:10529434 MGI:1346456 NCBI chrNW_004955422:22,362,330...22,418,062
Ensembl chrNW_004955422:22,362,221...22,427,622
JBrowse link
G Scrib scribble planar cell polarity protein ISO (MGI:4359580|PMID:19041750) UniProt PMID:19041750 MGI:4359580 NCBI chrNW_004955454:2,461,526...2,482,734
Ensembl chrNW_004955454:2,461,760...2,482,098
JBrowse link
G Slit2 slit guidance ligand 2 ISO (MGI:3617129|PMID:16439476) MGI PMID:16439476 MGI:3617129 NCBI chrNW_004955480:3,982,977...4,314,160
Ensembl chrNW_004955480:3,984,586...4,313,908
JBrowse link
branch elongation involved in mammary gland duct branching term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgfb1 transforming growth factor beta 1 ISO (MGI:3814777|PMID:18614704) MGI PMID:18614704 MGI:3814777 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441
JBrowse link
branching involved in mammary gland duct morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase ISO (MGI:3054694|PMID:15340078) MGI PMID:15340078 MGI:3054694 NCBI chrNW_004955485:8,724,375...8,846,647
Ensembl chrNW_004955485:8,724,380...8,837,741
JBrowse link
G Csf1 colony stimulating factor 1 ISO (MGI:3640884|PMID:10804170) MGI PMID:10804170 MGI:3640884 NCBI chrNW_004955435:13,404,236...13,423,059
Ensembl chrNW_004955435:13,404,508...13,424,247
JBrowse link
G Ddr1 discoidin domain receptor tyrosine kinase 1 ISO (MGI:1932625|PMID:11283268) MGI PMID:11283268 MGI:1932625 NCBI chrNW_004955583:820,893...838,515
Ensembl chrNW_004955583:820,931...841,654
JBrowse link
G Epha2 EPH receptor A2 ISO (MGI:5284750|PMID:19321667) UniProt PMID:19321667 MGI:5284750 NCBI chrNW_004955527:2,120,447...2,151,932
Ensembl chrNW_004955527:2,120,266...2,152,781
JBrowse link
G Etv4 ETS variant transcription factor 4 ISO (MGI:2667785|PMID:12871699)
(MGI:3828920|PMID:18977342)
MGI PMID:12871699, PMID:18977342 MGI:2667785, MGI:3828920 NCBI chrNW_004955451:16,965,404...16,976,503
Ensembl chrNW_004955451:16,965,125...16,976,127
JBrowse link
G Kdm5b lysine demethylase 5B ISO (MGI:5619178|PMID:24802759) MGI PMID:24802759 MGI:5619178 NCBI chrNW_004955406:38,755,220...38,823,094
Ensembl chrNW_004955406:38,755,220...38,823,088
JBrowse link
G Lrp5 LDL receptor related protein 5 ISO (MGI:3692480|PMID:16973609) MGI PMID:16973609 MGI:3692480 NCBI chrNW_004955422:17,394,371...17,475,244
Ensembl chrNW_004955422:17,394,371...17,505,763
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO (MGI:3849913|PMID:19503830) MGI PMID:19503830 MGI:3849913 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650
JBrowse link
G Msx2 msh homeobox 2 ISO (MGI:1355063|PMID:10742104) MGI PMID:10742104 MGI:1355063 NCBI chrNW_004955408:27,323,405...27,329,484
Ensembl chrNW_004955408:27,323,360...27,329,755
JBrowse link
G Pml PML nuclear body scaffold ISO (MGI:3839212|PMID:19261859) MGI PMID:19261859 MGI:3839212 NCBI chrNW_004955450:3,654,854...3,692,057
Ensembl chrNW_004955450:3,656,498...3,692,406
JBrowse link
G Slc12a2 solute carrier family 12 member 2 ISO (MGI:2180693|PMID:8864124) MGI PMID:8864124 MGI:2180693 NCBI chrNW_004955415:1,138,297...1,219,241
Ensembl chrNW_004955415:1,137,327...1,219,241
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO (MGI:3589531|PMID:16007215) MGI PMID:16007215 MGI:3589531 NCBI chrNW_004955445:19,213,210...19,227,670
Ensembl chrNW_004955445:19,215,161...19,228,695
JBrowse link
G Tbx3 T-box transcription factor 3 ISO (MGI:3608166|PMID:16222716) MGI PMID:16222716 MGI:3608166 NCBI chrNW_004955455:15,988,153...16,000,156
Ensembl chrNW_004955455:15,988,663...16,000,063
JBrowse link
dichotomous subdivision of terminal units involved in mammary gland duct morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Areg amphiregulin ISO (MGI:3703920|PMID:17369357) MGI PMID:17369357 MGI:3703920 NCBI chrNW_004955474:680,212...689,021
Ensembl chrNW_004955474:680,204...689,088
JBrowse link
G Tfap2c transcription factor AP-2 gamma ISO (MGI:4422106|PMID:20131354) MGI PMID:20131354 MGI:4422106 NCBI chrNW_004955445:2,626,896...2,636,607
Ensembl chrNW_004955445:2,626,823...2,636,607
JBrowse link
epithelial cell proliferation involved in mammary gland duct elongation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Areg amphiregulin ISO (MGI:3703920|PMID:17369357) MGI PMID:17369357 MGI:3703920 NCBI chrNW_004955474:680,212...689,021
Ensembl chrNW_004955474:680,204...689,088
JBrowse link
G Esr1 estrogen receptor 1 ISO (MGI:3629536|PMID:12021201) MGI PMID:12021201 MGI:3629536 NCBI chrNW_004955439:9,588,631...9,953,606
Ensembl chrNW_004955439:9,588,201...9,963,353
JBrowse link
G Med1 mediator complex subunit 1 ISO (MGI:3576991|PMID:15647257) MGI PMID:15647257 MGI:3576991 NCBI chrNW_004955451:14,204,326...14,237,809
Ensembl chrNW_004955451:14,202,744...14,237,797
JBrowse link
G Tfap2c transcription factor AP-2 gamma ISO (MGI:4422106|PMID:20131354) MGI PMID:20131354 MGI:4422106 NCBI chrNW_004955445:2,626,896...2,636,607
Ensembl chrNW_004955445:2,626,823...2,636,607
JBrowse link
G Wnt5a Wnt family member 5A ISO (MGI:3761053|PMID:17898001) MGI PMID:17898001 MGI:3761053 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684
JBrowse link
lateral sprouting involved in mammary gland duct morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor ISO (MGI:2683859|PMID:14676301) MGI PMID:14676301 MGI:2683859 NCBI chrNW_004955475:7,013,960...7,192,473
Ensembl chrNW_004955475:7,013,960...7,186,069
JBrowse link
G Wnt5a Wnt family member 5A ISO (MGI:3761053|PMID:17898001) MGI PMID:17898001 MGI:3761053 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684
JBrowse link
mammary duct terminal end bud growth term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csf1 colony stimulating factor 1 ISO (MGI:3640884|PMID:10804170) MGI PMID:10804170 MGI:3640884 NCBI chrNW_004955435:13,404,236...13,423,059
Ensembl chrNW_004955435:13,404,508...13,424,247
JBrowse link
G Kdm5b lysine demethylase 5B ISO (MGI:5619178|PMID:24802759) MGI PMID:24802759 MGI:5619178 NCBI chrNW_004955406:38,755,220...38,823,094
Ensembl chrNW_004955406:38,755,220...38,823,088
JBrowse link
G Mst1 macrophage stimulating 1 ISO (MGI:5614192|PMID:25049204) MGI PMID:25049204 MGI:5614192 NCBI chrNW_004955532:1,590,685...1,595,655
Ensembl chrNW_004955532:1,590,755...1,595,148
JBrowse link
G Robo1 roundabout guidance receptor 1 ISO (MGI:3617129|PMID:16439476) MGI PMID:16439476 MGI:3617129 NCBI chrNW_004955407:12,593,911...13,485,723
Ensembl chrNW_004955407:13,107,235...13,487,053
JBrowse link
G Slc12a2 solute carrier family 12 member 2 ISO (MGI:2180453|PMID:12040017) MGI PMID:12040017 MGI:2180453 NCBI chrNW_004955415:1,138,297...1,219,241
Ensembl chrNW_004955415:1,137,327...1,219,241
JBrowse link
G Slit2 slit guidance ligand 2 ISO (MGI:3617129|PMID:16439476) MGI PMID:16439476 MGI:3617129 NCBI chrNW_004955480:3,982,977...4,314,160
Ensembl chrNW_004955480:3,984,586...4,313,908
JBrowse link
mammary gland branching involved in pregnancy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csmd1 CUB and Sushi multiple domains 1 ISO (MGI:6369467|PMID:31604923) MGI PMID:31604923 MGI:6369467 NCBI chrNW_004955403:55,809,895...57,101,986
Ensembl chrNW_004955403:55,851,519...57,099,067
JBrowse link
G Esr1 estrogen receptor 1 ISO (MGI:1926565|PMID:10919287) MGI PMID:10919287 MGI:1926565 NCBI chrNW_004955439:9,588,631...9,953,606
Ensembl chrNW_004955439:9,588,201...9,963,353
JBrowse link
G Med1 mediator complex subunit 1 ISO (MGI:3576991|PMID:15647257) MGI PMID:15647257 MGI:3576991 NCBI chrNW_004955451:14,204,326...14,237,809
Ensembl chrNW_004955451:14,202,744...14,237,797
JBrowse link
G Vdr vitamin D receptor ISO (MGI:3051725|PMID:15178742) MGI PMID:15178742 MGI:3051725 NCBI chrNW_004955500:6,745,725...6,798,052
Ensembl chrNW_004955500:6,745,678...6,798,048
JBrowse link
mammary gland branching involved in thelarche term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Areg amphiregulin ISO (MGI:1336843|PMID:10331984), (MGI:3703920|PMID:17369357) MGI PMID:10331984, PMID:17369357 MGI:1336843, MGI:3703920 NCBI chrNW_004955474:680,212...689,021
Ensembl chrNW_004955474:680,204...689,088
JBrowse link
G Med1 mediator complex subunit 1 ISO (MGI:3576991|PMID:15647257) MGI PMID:15647257 MGI:3576991 NCBI chrNW_004955451:14,204,326...14,237,809
Ensembl chrNW_004955451:14,202,744...14,237,797
JBrowse link
G Ncoa3 nuclear receptor coactivator 3 ISO (MGI:1859522|PMID:11015591) MGI PMID:11015591 MGI:1859522 NCBI chrNW_004955445:10,020,916...10,085,318
Ensembl chrNW_004955445:10,024,308...10,052,472
JBrowse link
G Phb2 prohibitin 2 ISO (MGI:3695669|PMID:17065319) MGI PMID:17065319 MGI:3695669 NCBI chrNW_004955413:4,557,969...4,563,697
Ensembl chrNW_004955413:4,558,259...4,563,582
JBrowse link
G Tgfb1 transforming growth factor beta 1 ISO (MGI:3814777|PMID:18614704) MGI PMID:18614704 MGI:3814777 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441
JBrowse link
G Wnt5a Wnt family member 5A ISO (MGI:3761053|PMID:17898001) MGI PMID:17898001 MGI:3761053 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684
JBrowse link
mammary gland bud elongation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pthlh parathyroid hormone like hormone ISO (MGI:1203302|PMID:9477327) MGI PMID:9477327 MGI:1203302 NCBI chrNW_004955505:6,834,533...6,846,909
Ensembl chrNW_004955505:6,834,533...6,847,335
JBrowse link
mammary gland bud formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 ISO (MGI:2155478|PMID:11782400) MGI PMID:11782400 MGI:2155478 NCBI chrNW_004955446:18,163,117...18,244,840
Ensembl chrNW_004955446:18,163,117...18,245,199
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO (MGI:2155478|PMID:11782400) MGI PMID:11782400 MGI:2155478 NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
mammary gland bud morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sostdc1 sclerostin domain containing 1 ISO (MGI:5319554|PMID:22509524) MGI PMID:22509524 MGI:5319554 NCBI chrNW_004955410:19,657,805...19,662,121
Ensembl chrNW_004955410:19,657,029...19,662,131
JBrowse link
regulation of branching involved in mammary gland duct morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cav3 caveolin 3 ISO (MGI:3830397|PMID:19164602) MGI PMID:19164602 MGI:3830397 NCBI chrNW_004955561:326,008...335,911
Ensembl chrNW_004955561:325,944...335,914
JBrowse link
G Etv5 ETS variant transcription factor 5 ISO (MGI:2667785|PMID:12871699) MGI PMID:12871699 MGI:2667785 NCBI chrNW_004955420:21,503,820...21,576,539
Ensembl chrNW_004955420:21,509,248...21,576,599
JBrowse link
G Phb2 prohibitin 2 ISO (MGI:3695669|PMID:17065319) MGI PMID:17065319 MGI:3695669 NCBI chrNW_004955413:4,557,969...4,563,697
Ensembl chrNW_004955413:4,558,259...4,563,582
JBrowse link
G Tgfb1 transforming growth factor beta 1 ISO (MGI:3761053|PMID:17898001) MGI PMID:17898001 MGI:3761053 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441
JBrowse link
G Wnt5a Wnt family member 5A ISO (MGI:3761053|PMID:17898001) MGI PMID:17898001 MGI:3761053 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684
JBrowse link
tertiary branching involved in mammary gland duct morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor ISO (MGI:2683859|PMID:14676301) MGI PMID:14676301 MGI:2683859 NCBI chrNW_004955475:7,013,960...7,192,473
Ensembl chrNW_004955475:7,013,960...7,186,069
JBrowse link
G Pgr progesterone receptor ISO (MGI:1354852|PMID:10733525) MGI PMID:10733525 MGI:1354852 NCBI chrNW_004955412:4,643,839...4,693,478 JBrowse link
G Wnt4 Wnt family member 4 ISO (MGI:1354852|PMID:10733525) MGI PMID:10733525 MGI:1354852 NCBI chrNW_004955452:2,319,446...2,344,740
Ensembl chrNW_004955452:2,319,446...2,344,989
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11893
    developmental process 5616
      anatomical structure morphogenesis 2502
        tube morphogenesis 841
          epithelial tube morphogenesis 375
            mammary gland duct morphogenesis 40
              branching involved in mammary gland duct morphogenesis + 28
              mammary duct terminal end bud growth 6
              mammary gland bud morphogenesis + 4
              mammary gland cord morphogenesis + 0
              mammary gland duct cavitation 0
              mammary gland duct regression in males 0
Path 2
Term Annotations click to browse term
  biological_process 11893
    developmental process 5616
      anatomical structure development 5254
        multicellular organism development 4812
          system development 4532
            animal organ development 3490
              animal organ morphogenesis 1015
                gland morphogenesis 160
                  mammary gland morphogenesis 61
                    mammary gland duct morphogenesis 40
                      branching involved in mammary gland duct morphogenesis + 28
                      mammary duct terminal end bud growth 6
                      mammary gland bud morphogenesis + 4
                      mammary gland cord morphogenesis + 0
                      mammary gland duct cavitation 0
                      mammary gland duct regression in males 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.