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ONTOLOGY REPORT - ANNOTATIONS


Term:adipose tissue development
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Accession:GO:0060612 term browser browse the term
Definition:The process whose specific outcome is the progression of adipose tissue over time, from its formation to the mature structure. Adipose tissue is specialized tissue that is used to store fat.
Synonyms:related_synonym: adipogenesis


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adipose tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07034833.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr12:53,872...54,885 JBrowse link
G AABR07071701.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:126,975,833...126,976,850 JBrowse link
G Aacs acetoacetyl-CoA synthetase IEP RGD PMID:16055091 RGD:2301021 NCBI chr12:36,512,393...36,555,694
Ensembl chr12:36,512,393...36,555,694
JBrowse link
G Acat1 acetyl-CoA acetyltransferase 1 IEP RGD PMID:2866764 RGD:2326101 NCBI chr 8:58,166,990...58,195,884
Ensembl chr 8:58,166,990...58,195,884
JBrowse link
G Adrm1 adhesion regulating molecule 1 ISO (MGI:4849324|PMID:21048919) RGD PMID:21048919 MGI:4849324 NCBI chr 3:175,548,181...175,552,943
Ensembl chr 3:175,548,174...175,552,947
JBrowse link
G Amer1 APC membrane recruitment protein 1 ISO MGI:2446599|MGI:5086003 (MGI:5013668|PMID:21571217) RGD PMID:21571217 MGI:5013668 NCBI chr  X:64,686,620...64,702,504
Ensembl chr  X:64,686,623...64,702,441
JBrowse link
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 ISO MGI:5620801 (MGI:5608551|PMID:24928897) RGD PMID:24928897 MGI:5608551 NCBI chr  X:32,329,883...32,376,301
Ensembl chr  X:32,329,598...32,355,307
JBrowse link
G Arid5b AT-rich interaction domain 5B ISO (MGI:5009387|PMID:18070594) RGD PMID:18070594 MGI:5009387 NCBI chr20:21,713,900...21,881,193
Ensembl chr20:21,564,975...21,880,715
JBrowse link
G Atf2 activating transcription factor 2 ISO MGI:2443973 (MGI:4420477|PMID:19948881) RGD PMID:19948881 MGI:4420477 NCBI chr 3:60,721,137...60,795,951
Ensembl chr 3:60,721,135...60,795,951
JBrowse link
G Bdh1 3-hydroxybutyrate dehydrogenase 1 IEP RGD PMID:2866764 RGD:2326101 NCBI chr11:72,577,547...72,619,435
Ensembl chr11:72,578,533...72,614,176
JBrowse link
G Bscl2 BSCL2 lipid droplet biogenesis associated, seipin ISO MGI:5014325 (MGI:5013999|PMID:21551454) RGD PMID:21551454 MGI:5013999 NCBI chr 1:225,035,956...225,046,137
Ensembl chr 1:225,037,737...225,046,040
JBrowse link
G Cdk4 cyclin-dependent kinase 4 ISO MGI:2154520|MGI:2154521 (MGI:5755307|PMID:26657864) RGD PMID:26657864 MGI:5755307 NCBI chr 7:70,345,971...70,352,689
Ensembl chr 7:70,349,863...70,352,418
JBrowse link
G Creb5 cAMP responsive element binding protein 5 ISO MGI:109349 (MGI:4420477|PMID:19948881) RGD PMID:19948881 MGI:4420477 NCBI chr 4:83,390,782...83,840,356
Ensembl chr 4:83,391,283...83,836,351
JBrowse link
G Dhrs7b dehydrogenase/reductase 7B ISO MGI:2669525|MGI:5749209 (MGI:6103958|PMID:28930673) RGD PMID:28930673 MGI:6103958 NCBI chr10:47,065,755...47,111,089
Ensembl chr10:47,065,850...47,111,101
JBrowse link
G Dyrk1b dual specificity tyrosine phosphorylation regulated kinase 1B ISO (PMID:24827035) RGD PMID:24827035 NCBI chr 1:85,112,819...85,120,840
Ensembl chr 1:85,112,247...85,120,839
JBrowse link
G Ebf2 EBF transcription factor 2 ISO MGI:3037977 (MGI:5495569|PMID:23499423) RGD PMID:23499423 MGI:5495569 NCBI chr15:43,905,099...44,103,742
Ensembl chr15:43,905,099...44,103,742
JBrowse link
G Fgl1 fibrinogen-like 1 ISO MGI:5510996 (MGI:5505372|PMID:23483972) RGD PMID:23483972 MGI:5505372 NCBI chr16:54,153,086...54,188,120
Ensembl chr16:54,153,054...54,188,181
JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase IEA
ISO
GO_REF:0000107
(MGI:3840763|PMID:19234441)
Ensembl
RGD
PMID:19234441 GO_REF:0000107, MGI:3840763 NCBI chr19:16,774,549...17,115,098
Ensembl chr19:16,772,744...17,115,113
JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO MGI:1858044 (MGI:69334|PMID:7958830) RGD PMID:7958830 MGI:69334 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 IEP RGD PMID:10357839 RGD:2326128 NCBI chr 2:200,452,623...200,480,785
Ensembl chr 2:200,452,624...200,479,423
JBrowse link
G Id2 inhibitor of DNA binding 2 ISO MGI:3806370 (MGI:3804739|PMID:18562627) RGD PMID:18562627 MGI:3804739 NCBI chr 6:44,360,077...44,361,908
Ensembl chr 6:44,348,501...44,363,915
JBrowse link
G Lep leptin ISO MGI:101761 (MGI:1355047|PMID:10742101) RGD PMID:10742101 MGI:1355047 NCBI chr 4:56,337,695...56,351,818
Ensembl chr 4:56,337,695...56,351,818
JBrowse link
G LOC102554748 nidogen-2-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:380,313...427,615
Ensembl chr 7:380,741...381,732
JBrowse link
G Lrp5 LDL receptor related protein 5 ISO
IBA
(PMID:17680723)
PMID:21873635
RGD PMID:17680723, PMID:21873635 RGD:13792537 NCBI chr 1:218,816,833...218,920,147
Ensembl chr 1:218,816,841...218,920,094
JBrowse link
G Nampt nicotinamide phosphoribosyltransferase NOT ISO (PMID:17983582) RGD PMID:17983582 NCBI chr 6:52,122,085...52,156,473
Ensembl chr 6:52,122,085...52,156,472
JBrowse link
G Oxct1 3-oxoacid CoA transferase 1 IEP RGD PMID:2866764 RGD:2326101 NCBI chr 2:53,859,738...54,007,733
Ensembl chr 2:53,859,737...54,007,756
JBrowse link
G Paxip1 PAX interacting protein 1 ISO (MGI:4354659|PMID:19583951) RGD PMID:19583951 MGI:4354659 NCBI chr 4:3,956,931...4,008,326
Ensembl chr 4:3,959,640...4,008,326
JBrowse link
G Pgrmc2 progesterone receptor membrane component 2 ISS
ISO
GO_REF:0000024
(PMID:28111073)
UniProt
RGD
PMID:28111073 GO_REF:0000024 NCBI chr 2:127,986,106...128,002,005
Ensembl chr 2:127,986,109...128,002,005
JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha ISO MGI:4845856 (MGI:5582991|PMID:24691033) RGD PMID:24691033 MGI:5582991 NCBI chr 2:118,831,350...118,861,456
Ensembl chr 2:118,831,350...118,861,454
JBrowse link
G Ppard peroxisome proliferator-activated receptor delta ISO MGI:2386684 (MGI:2155659|PMID:11756685) RGD PMID:11756685 MGI:2155659 NCBI chr20:7,818,289...7,883,482
Ensembl chr20:7,818,289...7,885,333
JBrowse link
G Ppargc1a PPARG coactivator 1 alpha ISO (MGI:5309068|PMID:22237023) RGD PMID:22237023 MGI:5309068 NCBI chr14:63,095,291...63,190,688
Ensembl chr14:63,095,720...63,187,009
JBrowse link
G Rorc RAR-related orphan receptor C ISO (MGI:5545969|PMID:21853531) RGD PMID:21853531 MGI:5545969 NCBI chr 2:195,612,471...195,636,797
Ensembl chr 2:195,617,021...195,637,630
JBrowse link
G Selenom selenoprotein M ISO MGI:3812975 (MGI:5527224|PMID:23880772) RGD PMID:23880772 MGI:5527224 NCBI chr14:83,752,393...83,754,975
Ensembl chr14:83,752,393...83,754,973
JBrowse link
G Sh3pxd2b SH3 and PX domains 2B ISO (MGI:4439252|PMID:20137777) RGD PMID:20137777 MGI:4439252 NCBI chr10:17,209,152...17,296,449
Ensembl chr10:17,209,212...17,291,876
JBrowse link
G Slc25a25 solute carrier family 25 member 25 ISO MGI:4948968 (MGI:4947900|PMID:21296886) RGD PMID:21296886 MGI:4947900 NCBI chr 3:11,442,396...11,476,186
Ensembl chr 3:11,442,397...11,452,529
JBrowse link
G Sox8 SRY-box transcription factor 8 ISS
ISO
GO_REF:0000024
MGI:2154329 (MGI:2150451|PMID:11564878), (MGI:3850606|PMID:19286648)
UniProt
RGD
PMID:11564878, PMID:19286648 GO_REF:0000024, MGI:2150451, MGI:3850606 NCBI chr10:14,932,348...14,937,336
Ensembl chr10:14,932,348...14,937,336
JBrowse link
G Spart spartin ISO MGI:5430946 (MGI:5430704|PMID:22619377) RGD PMID:22619377 MGI:5430704 NCBI chr 2:144,522,382...144,548,968
Ensembl chr 2:144,522,072...144,548,917
JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 ISS
ISO
GO_REF:0000024
(MGI:5917779|PMID:28698261), (MGI:6107161|PMID:27818258)
UniProt
RGD
PMID:27818258, PMID:28698261 GO_REF:0000024, MGI:5917779, MGI:6107161 NCBI chr 6:111,334,408...111,417,960
Ensembl chr 6:111,339,136...111,417,954
JBrowse link
G Tbl1xr1 TBL1X receptor 1 ISO MGI:5511131 (MGI:5495568|PMID:23499424) RGD PMID:23499424 MGI:5495568 NCBI chr 2:107,221,913...107,359,229
Ensembl chr 2:107,233,054...107,359,229
JBrowse link
G Ubb ubiquitin B ISO MGI:3774112 (MGI:3776935|PMID:18299572) RGD PMID:18299572 MGI:3776935 NCBI chr10:48,880,231...48,881,896
Ensembl chr10:48,881,049...48,881,881
JBrowse link
G Umodl1 uromodulin-like 1 ISO (MGI:5494821|PMID:23190605) RGD PMID:23190605 MGI:5494821 NCBI chr20:9,643,509...9,703,091
Ensembl chr20:9,643,612...9,701,170
JBrowse link
G Xbp1 X-box binding protein 1 ISS
ISO
GO_REF:0000024
(MGI:5496939|PMID:23623498)
UniProt
RGD
PMID:23623498 GO_REF:0000024, MGI:5496939 NCBI chr14:85,753,736...85,758,820
Ensembl chr14:85,753,760...85,758,145
JBrowse link
G Zfp516 zinc finger protein 516 ISO (MGI:5616937|PMID:25578880) RGD PMID:25578880 MGI:5616937 NCBI chr18:79,768,387...79,857,909
Ensembl chr18:79,773,608...79,854,192
JBrowse link
fat pad development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid5b AT-rich interaction domain 5B ISO MGI:3771593 (MGI:3771609|PMID:14651970) RGD PMID:14651970 MGI:3771609 NCBI chr20:21,713,900...21,881,193
Ensembl chr20:21,564,975...21,880,715
JBrowse link
G Arrdc3 arrestin domain containing 3 ISO MGI:3877613 (MGI:5302794|PMID:21982743) RGD PMID:21982743 MGI:5302794 NCBI chr 2:8,732,907...8,745,445
Ensembl chr 2:8,732,932...8,743,069
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO MGI:3055492 (MGI:3784949|PMID:16794820) RGD PMID:16794820 MGI:3784949 NCBI chr 8:64,115,005...64,154,432
Ensembl chr 8:64,121,392...64,154,396
JBrowse link
G Casr calcium-sensing receptor IEP RGD PMID:21940515 RGD:7205697 NCBI chr11:67,188,204...67,262,261
Ensembl chr11:67,188,630...67,258,771
JBrowse link
G Dgat2 diacylglycerol O-acyltransferase 2 ISO (MGI:3778742|PMID:18252207) RGD PMID:18252207 MGI:3778742 NCBI chr 1:164,113,459...164,143,818
Ensembl chr 1:164,113,459...164,143,818
JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO MGI:104663 (MGI:1355047|PMID:10742101) RGD PMID:10742101 MGI:1355047 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
JBrowse link
G Tbl1xr1 TBL1X receptor 1 ISO MGI:5511131 (MGI:5495568|PMID:23499424) RGD PMID:23499424 MGI:5495568 NCBI chr 2:107,221,913...107,359,229
Ensembl chr 2:107,233,054...107,359,229
JBrowse link
G Ubb ubiquitin B ISO MGI:3774112 (MGI:3776935|PMID:18299572) RGD PMID:18299572 MGI:3776935 NCBI chr10:48,880,231...48,881,896
Ensembl chr10:48,881,049...48,881,881
JBrowse link
mammary gland fat development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csf1 colony stimulating factor 1 ISO MGI:1856333 (MGI:3640884|PMID:10804170) RGD PMID:10804170 MGI:3640884 NCBI chr 2:210,522,370...210,550,546
Ensembl chr 2:210,522,375...210,550,560
JBrowse link
negative regulation of adipose tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07067882.1 IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr 9:70,787,136...70,787,913 JBrowse link
G Klf7 Kruppel like factor 7 ISO (PMID:16339272) RGD PMID:16339272 NCBI chr 9:70,740,480...70,787,913
Ensembl chr 9:70,740,480...70,787,913
JBrowse link
G Lmna lamin A/C IMP RGD PMID:22119912 RGD:10003161 NCBI chr 2:187,842,884...187,863,552
Ensembl chr 2:187,842,885...187,863,516
JBrowse link
G Pou4f2 POU class 4 homeobox 2 ISO (MGI:5804084|PMID:26670484) RGD PMID:26670484 MGI:5804084 NCBI chr19:33,160,180...33,163,821
Ensembl chr19:33,160,180...33,163,821
JBrowse link
G Sirt1 sirtuin 1 ISO (PMID:23951196) RGD PMID:23951196 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
positive regulation of adipose tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ghrl ghrelin and obestatin prepropeptide IDA RGD PMID:14551228 RGD:12904887 NCBI chr 4:145,674,157...145,678,066
Ensembl chr 4:145,674,157...145,678,066
JBrowse link
G Mir103a1 microRNA 103a-1 ISO (MGI:4352813|PMID:19188425) RGD PMID:19188425 MGI:4352813 NCBI chr10:20,606,715...20,606,800
Ensembl chr10:20,606,715...20,606,800
JBrowse link
G Mir103a2 microRNA 103a-2 ISO (MGI:4352813|PMID:19188425) RGD PMID:19188425 MGI:4352813 NCBI chr 3:123,833,671...123,833,756
Ensembl chr 3:123,833,671...123,833,756
JBrowse link
G Mir143 microRNA 143 ISO (MGI:4352813|PMID:19188425) RGD PMID:19188425 MGI:4352813 NCBI chr18:56,971,273...56,971,377
Ensembl chr18:56,971,273...56,971,377
JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 IEA
ISO
GO_REF:0000107
(MGI:3640632|PMID:16446356)
Ensembl
RGD
PMID:16446356 GO_REF:0000107, MGI:3640632 NCBI chr 7:30,003,429...30,162,095
Ensembl chr 7:30,003,429...30,162,056
JBrowse link
G Sh3pxd2b SH3 and PX domains 2B ISO (MGI:5800302|PMID:27711054) RGD PMID:27711054 MGI:5800302 NCBI chr10:17,209,152...17,296,449
Ensembl chr10:17,209,212...17,291,876
JBrowse link
G Sirt1 sirtuin 1 ISO (MGI:5319292|PMID:22315447) RGD PMID:22315447 MGI:5319292 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
G Sorl1 sortilin related receptor 1 ISO (PMID:27322061)
(MGI:5811185|PMID:27322061)
RGD PMID:27322061 MGI:5811185 NCBI chr 8:46,228,077...46,287,171 JBrowse link
G Trpm4 transient receptor potential cation channel, subfamily M, member 4 IMP RGD PMID:23081848 RGD:10003033 NCBI chr 1:101,293,300...101,323,484
Ensembl chr 1:101,293,409...101,323,960
JBrowse link
regulation of adipose tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plaat3 phospholipase A and acyltransferase 3 ISS
ISO
GO_REF:0000024
(MGI:5825426|PMID:19136964)
UniProt
RGD
PMID:19136964 GO_REF:0000024, MGI:5825426 NCBI chr 1:222,844,238...222,877,180
Ensembl chr 1:222,844,144...222,877,193
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure development 6268
        animal organ development 4033
          adipose tissue development 61
            fat pad development 8
            mammary gland fat development + 1
            negative regulation of adipose tissue development 5
            positive regulation of adipose tissue development 9
            regulation of adipose tissue development + 14
Path 2
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure development 6268
        multicellular organism development 5743
          system development 5279
            animal organ development 4033
              adipose tissue development 61
                fat pad development 8
                mammary gland fat development + 1
                negative regulation of adipose tissue development 5
                positive regulation of adipose tissue development 9
                regulation of adipose tissue development + 14
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.