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ONTOLOGY REPORT - ANNOTATIONS


Term:ectodermal placode formation
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Accession:GO:0060788 term browser browse the term
Definition:The developmental process in which an ectodermal placode forms. An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm.


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hair follicle placode formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 IEA
ISO
GO_REF:0000107
MGI:MGI:1195272|MGI:MGI:2148594|MGI:MGI:2148596 (MGI:MGI:1934694|PMID:11371349), (MGI:MGI:4355652|PMID:19619491)
Ensembl
RGD
PMID:11371349, PMID:19619491 GO_REF:0000107, MGI:MGI:1934694, MGI:MGI:4355652 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Eda ectodysplasin-A ISO MGI:MGI:88276 (MGI:MGI:4355652|PMID:19619491) RGD PMID:19619491 MGI:MGI:4355652 NCBI chr  X:69,730,123...70,222,693
Ensembl chr  X:69,730,242...70,220,329
JBrowse link
G Gnas GNAS complex locus ISO (PMID:12719376) RGD PMID:12719376 NCBI chr 3:172,374,957...172,434,988
Ensembl chr 3:172,374,957...172,428,483
Ensembl chr 3:172,374,957...172,428,483
JBrowse link
G Hdac1 histone deacetylase 1 ISO UniProtKB:P70288 (MGI:MGI:4889029|PMID:21093383) RGD PMID:21093383 MGI:MGI:4889029 NCBI chr 5:147,716,664...147,743,723
Ensembl chr 5:147,716,664...147,743,723
JBrowse link
G Hdac2 histone deacetylase 2 ISO UniProtKB:O09106 (MGI:MGI:4889029|PMID:21093383) RGD PMID:21093383 MGI:MGI:4889029 NCBI chr20:43,084,870...43,108,198
Ensembl chr20:43,084,870...43,108,198
JBrowse link
mammary placode formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 ISO MGI:MGI:2156191 (MGI:MGI:3849913|PMID:19503830) RGD PMID:19503830 MGI:MGI:3849913 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Nrg3 neuregulin 3 ISO MGI:MGI:1889610 (MGI:MGI:1353819|PMID:10723730) RGD PMID:10723730 MGI:MGI:1353819 NCBI chr16:15,763,031...16,932,208
Ensembl chr16:15,764,632...15,798,974
JBrowse link
G Tbx2 T-box transcription factor 2 ISO MGI:MGI:98495 (MGI:MGI:3608166|PMID:16222716) RGD PMID:16222716 MGI:MGI:3608166 NCBI chr10:73,278,932...73,290,764
Ensembl chr10:73,279,119...73,289,921
JBrowse link
G Tbx3 T-box transcription factor 3 ISO MGI:MGI:98494 (MGI:MGI:3608166|PMID:16222716), (MGI:MGI:3695659|PMID:17071745) RGD PMID:16222716, PMID:17071745 MGI:MGI:3608166, MGI:MGI:3695659 NCBI chr12:42,479,518...42,494,588
Ensembl chr12:42,480,560...42,492,526
JBrowse link
negative regulation of hair follicle placode formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk4 dickkopf WNT signaling pathway inhibitor 4 ISO (MGI:MGI:3805070|PMID:18508042) RGD PMID:18508042 MGI:MGI:3805070 NCBI chr16:74,260,551...74,264,142
Ensembl chr16:74,260,551...74,264,142
JBrowse link
olfactory placode formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou2f1 POU class 2 homeobox 1 ISO MGI:MGI:98364 (MGI:MGI:3701404|PMID:17140559) RGD PMID:17140559 MGI:MGI:3701404 NCBI chr13:84,075,316...84,217,368
Ensembl chr13:84,083,632...84,217,366
JBrowse link
G Six1 SIX homeobox 1 ISO (MGI:MGI:3833798|PMID:19027001) RGD PMID:19027001 MGI:MGI:3833798 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296
JBrowse link
G Six4 SIX homeobox 4 ISO (MGI:MGI:3833798|PMID:19027001) RGD PMID:19027001 MGI:MGI:3833798 NCBI chr 6:95,984,868...95,999,709
Ensembl chr 6:95,984,868...95,998,529
JBrowse link
G Sox2 SRY-box transcription factor 2 ISO MGI:MGI:101898 (MGI:MGI:3701404|PMID:17140559) RGD PMID:17140559 MGI:MGI:3701404 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
optic placode formation involved in camera-type eye formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 ISO MGI:MGI:3521833 (MGI:MGI:3513737|PMID:15569927) RGD PMID:15569927 MGI:MGI:3513737 NCBI chr 7:60,128,506...60,210,482
Ensembl chr 7:60,128,508...60,210,518
JBrowse link
G Prox1 prospero homeobox 1 ISO (PMID:11850194) RGD PMID:11850194 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure formation involved in morphogenesis 1213
        ectodermal placode formation 16
          hair follicle placode formation + 6
          mammary placode formation + 4
          olfactory placode formation 4
          optic lobe placode formation 0
          optic placode formation + 2
          otic placode formation 0
          sebaceous gland placode formation 0
          sweat gland placode formation 0
          tooth placode formation 0
Path 2
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure development 6269
        anatomical structure morphogenesis 2877
          anatomical structure formation involved in morphogenesis 1213
            ectodermal placode formation 16
              hair follicle placode formation + 6
              mammary placode formation + 4
              olfactory placode formation 4
              optic lobe placode formation 0
              optic placode formation + 2
              otic placode formation 0
              sebaceous gland placode formation 0
              sweat gland placode formation 0
              tooth placode formation 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.