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ONTOLOGY REPORT - ANNOTATIONS


Term:ectodermal placode formation
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Accession:GO:0060788 term browser browse the term
Definition:The developmental process in which an ectodermal placode forms. An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm.


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hair follicle placode formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 IEA Ensembl GO_REF:0000107 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,137,173...25,208,311
JBrowse link
G EDA ectodysplasin A IEA Ensembl GO_REF:0000107 NCBI chr  X:55,770,958...56,103,296
Ensembl chr  X:55,771,240...56,103,265
JBrowse link
G GNAS GNAS complex locus ISO (PMID:12719376) UniProtKB PMID:12719376 NCBI chr17:58,985,580...59,053,022
Ensembl chr17:58,998,981...59,053,021
JBrowse link
G HDAC1 histone deacetylase 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:88,749,611...88,785,220
Ensembl chr 6:88,749,634...88,785,412
JBrowse link
G HDAC2 histone deacetylase 2 ISO (MGI:4889029|PMID:21093383) BHF-UCL PMID:21093383 MGI:4889029 NCBI chr 1:79,867,713...79,901,597
Ensembl chr 1:79,863,094...79,901,585
JBrowse link
mammary placode formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP6 LDL receptor related protein 6 ISO (MGI:3849913|PMID:19503830) MGI PMID:19503830 MGI:3849913 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,689
JBrowse link
G NRG3 neuregulin 3 IEA Ensembl GO_REF:0000107 NCBI chr14:83,316,962...84,405,347
Ensembl chr14:83,317,019...84,402,943
JBrowse link
G TBX2 T-box transcription factor 2 IEA Ensembl GO_REF:0000107 NCBI chr12:36,878,662...36,887,513
Ensembl chr12:36,878,675...36,887,513
JBrowse link
G TBX3 T-box transcription factor 3 IEA Ensembl GO_REF:0000107 NCBI chr14:37,582,704...37,596,767
Ensembl chr14:37,582,822...37,596,767
JBrowse link
negative regulation of hair follicle placode formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK4 dickkopf WNT signaling pathway inhibitor 4 IEA Ensembl GO_REF:0000107 NCBI chr17:11,389,551...11,394,754
Ensembl chr17:11,390,206...11,394,268
JBrowse link
olfactory placode formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POU2F1 POU class 2 homeobox 1 ISO (MGI:3701404|PMID:17140559) MGI PMID:17140559 MGI:3701404 NCBI chr 4:83,592,051...83,776,465
Ensembl chr 4:83,596,194...83,777,283
JBrowse link
G SIX1 SIX homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:189,620,430...189,624,652
Ensembl chr 1:189,619,853...189,628,187
JBrowse link
G SIX4 SIX homeobox 4 IEA Ensembl GO_REF:0000107 NCBI chr 1:189,670,390...189,682,378
Ensembl chr 1:189,670,390...189,682,783
JBrowse link
G SOX2 SRY-box transcription factor 2 ISO (MGI:3701404|PMID:17140559) MGI PMID:17140559 MGI:3701404 NCBI chr13:119,668,476...119,669,435 JBrowse link
optic placode formation involved in camera-type eye formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FRS2 fibroblast growth factor receptor substrate 2 IEA Ensembl GO_REF:0000107 NCBI chr 5:33,725,432...33,852,952
Ensembl chr 5:33,725,444...33,849,976
JBrowse link
G PROX1 prospero homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:129,527,704...129,583,693
Ensembl chr 9:129,532,164...129,580,979
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16548
    developmental process 6302
      anatomical structure formation involved in morphogenesis 1185
        ectodermal placode formation 16
          hair follicle placode formation + 6
          mammary placode formation + 4
          olfactory placode formation 4
          optic lobe placode formation 0
          optic placode formation + 2
          otic placode formation 0
          sebaceous gland placode formation 0
          sweat gland placode formation 0
          tooth placode formation 0
Path 2
Term Annotations click to browse term
  biological_process 16548
    developmental process 6302
      anatomical structure development 5842
        anatomical structure morphogenesis 2774
          anatomical structure formation involved in morphogenesis 1185
            ectodermal placode formation 16
              hair follicle placode formation + 6
              mammary placode formation + 4
              olfactory placode formation 4
              optic lobe placode formation 0
              optic placode formation + 2
              otic placode formation 0
              sebaceous gland placode formation 0
              sweat gland placode formation 0
              tooth placode formation 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.