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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of transcription involved in cell fate commitment
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Accession:GO:0060850 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a cell to a specific fate.


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regulation of transcription involved in cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cebpb CCAAT/enhancer binding protein beta JBrowse link 3 164,424,502 164,425,933 RGD:1624291
RGD:1600115
G Chd5 chromodomain helicase DNA binding protein 5 JBrowse link 5 169,519,212 169,572,059 RGD:1600115
RGD:1624291
G Pparg peroxisome proliferator-activated receptor gamma JBrowse link 4 147,274,055 147,399,383 RGD:1624291
RGD:1600115
G Rora RAR-related orphan receptor A JBrowse link 8 75,515,886 75,616,477 RGD:1624291
G Rorc RAR-related orphan receptor C JBrowse link 2 195,612,471 195,636,797 RGD:1624291
G Zbtb7b zinc finger and BTB domain containing 7B JBrowse link 2 188,704,989 188,719,674 RGD:1624291
BMP signaling pathway involved in mesodermal cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Etv2 ETS variant transcription factor 2 JBrowse link 1 89,091,239 89,094,570 RGD:1624291
regulation of transcription from RNA polymerase II promoter involved in definitive endodermal cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sox17 SRY-box transcription factor 17 JBrowse link 5 14,890,318 14,895,907 RGD:1624291
regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dlx1 distal-less homeobox 1 JBrowse link 3 58,164,931 58,169,521 RGD:1624291
RGD:1600115
G Dlx2 distal-less homeobox 2 JBrowse link 3 58,180,088 58,181,971 RGD:1624291
RGD:1600115
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 JBrowse link 7 2,875,898 2,905,463 RGD:1624291
regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pax6 paired box 6 JBrowse link 3 95,700,241 95,728,682 RGD:1624291
RGD:1600115
regulation of transcription from RNA polymerase II promoter involved in spinal cord association neuron specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lbx1 ladybird homeobox 1 JBrowse link 1 264,973,315 264,975,132 RGD:1624291
regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nkx6-1 NK6 homeobox 1 JBrowse link 14 9,555,264 9,562,197 RGD:1624291
G Nkx6-2 NK6 homeobox 2 JBrowse link 1 211,922,389 211,923,929 RGD:1624291
G Pax6 paired box 6 JBrowse link 3 95,700,241 95,728,682 RGD:1624291
RGD:1600115
regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Evx1 even-skipped homeobox 1 JBrowse link 4 82,370,829 82,374,313 RGD:1624291
G Nkx6-1 NK6 homeobox 1 JBrowse link 14 9,555,264 9,562,197 RGD:1624291
G Nkx6-2 NK6 homeobox 2 JBrowse link 1 211,922,389 211,923,929 RGD:1624291
G Pax6 paired box 6 JBrowse link 3 95,700,241 95,728,682 RGD:1624291
RGD:1600115
regulation of transcription involved in lymphatic endothelial cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nr2f2 nuclear receptor subfamily 2, group F, member 2 JBrowse link 1 131,447,671 131,465,749 RGD:1624291
G Prox1 prospero homeobox 1 JBrowse link 13 108,382,536 108,444,107 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19332
    cellular process 17237
      cellular developmental process 4414
        cell fate commitment 285
          regulation of transcription involved in cell fate commitment 18
            positive regulation of transcription from RNA polymerase II promoter involved in neuron fate specification 0
            regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment + 3
            regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment 1
            regulation of transcription from RNA polymerase II promoter involved in spinal cord association neuron specification 1
            regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification 3
            regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification 4
            regulation of transcription involved in lymphatic endothelial cell fate commitment 2
            regulation of transcription involved in primary germ layer cell fate commitment + 2
            regulation of transcription involved in venous endothelial cell fate commitment 0
Path 2
Term Annotations click to browse term
  biological_process 19332
    metabolic process 11554
      cellular metabolic process 10566
        cellular aromatic compound metabolic process 5484
          nucleobase-containing compound metabolic process 5258
            nucleic acid metabolic process 4770
              RNA metabolic process 4282
                RNA biosynthetic process 3347
                  nucleic acid-templated transcription 3335
                    transcription, DNA-templated 3288
                      regulation of transcription, DNA-templated 3178
                        regulation of transcription by RNA polymerase II 2094
                          regulation of transcription involved in cell fate commitment 18
                            positive regulation of transcription from RNA polymerase II promoter involved in neuron fate specification 0
                            regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment + 3
                            regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment 1
                            regulation of transcription from RNA polymerase II promoter involved in spinal cord association neuron specification 1
                            regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification 3
                            regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification 4
                            regulation of transcription involved in lymphatic endothelial cell fate commitment 2
                            regulation of transcription involved in primary germ layer cell fate commitment + 2
                            regulation of transcription involved in venous endothelial cell fate commitment 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.