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ONTOLOGY REPORT - ANNOTATIONS


Term:left/right pattern formation
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Accession:GO:0060972 term browser browse the term
Definition:The pattern specification process that results in the subdivision of the left/right axis in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment.


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left/right pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Cluap1 clusterin associated protein 1 ISO MGI:MGI:5523142 (MGI:MGI:5509110|PMID:23742838) RGD PMID:23742838 MGI:MGI:5509110 NCBI chr10:11,847,058...11,878,792
Ensembl chr10:11,847,102...11,878,792
JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 NOT ISO MGI:MGI:3512139 (MGI:MGI:4888062|PMID:21203428) RGD PMID:21203428 MGI:MGI:4888062 NCBI chr 1:243,662,819...243,669,312
Ensembl chr 1:243,662,823...243,669,312
JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 ISO
IEA
(PMID:19944400)
GO_REF:0000107
RGD
Ensembl
PMID:19944400 GO_REF:0000107 NCBI chr19:52,217,427...52,245,930
Ensembl chr19:52,217,984...52,245,929
JBrowse link
G Dpcd deleted in primary ciliary dyskinesia ISO (MGI:MGI:4948830|PMID:20080492) RGD PMID:20080492 MGI:MGI:4948830 NCBI chr 1:265,298,872...265,318,521
Ensembl chr 1:265,298,868...265,317,860
JBrowse link
G Foxj1 forkhead box J1 ISO MGI:MGI:2158221 (MGI:MGI:2156098|PMID:10873152) RGD PMID:10873152 MGI:MGI:2156098 NCBI chr10:105,282,090...105,289,396 JBrowse link
G Ift57 intraflagellar transport 57 ISO MGI:MGI:3707373 (MGI:MGI:3703110|PMID:17027958) RGD PMID:17027958 MGI:MGI:3703110 NCBI chr11:53,664,638...53,731,779
Ensembl chr11:53,664,638...53,731,779
JBrowse link
G Megf8 multiple EGF-like-domains 8 ISO
ISS
(PMID:23063620)
GO_REF:0000024
(MGI:MGI:5551355|PMID:24052814)
RGD
UniProt
PMID:23063620, PMID:24052814 GO_REF:0000024, MGI:MGI:5551355 NCBI chr 1:82,184,671...82,234,045
Ensembl chr 1:82,185,034...82,234,045
JBrowse link
G Nme7 NME/NM23 family member 7 ISO MGI:MGI:4151115 (MGI:MGI:4948830|PMID:20080492) RGD PMID:20080492 MGI:MGI:4948830 NCBI chr13:82,607,844...82,737,383
Ensembl chr13:82,626,685...82,737,343
JBrowse link
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting ISO MGI:MGI:4949891 (MGI:MGI:4948830|PMID:20080492) RGD PMID:20080492 MGI:MGI:4948830 NCBI chr14:89,047,949...89,193,579
Ensembl chr14:89,060,447...89,179,507
JBrowse link
G Snai1 snail family transcriptional repressor 1 ISO MGI:MGI:2183156 (MGI:MGI:3654743|PMID:16801545) RGD PMID:16801545 MGI:MGI:3654743 NCBI chr 3:164,274,710...164,279,199
Ensembl chr 3:164,274,710...164,279,378
JBrowse link
embryonic heart tube left/right pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO (MGI:MGI:3054669|PMID:15475956) RGD PMID:15475956 MGI:MGI:3054669 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Ift122 intraflagellar transport 122 ISO (MGI:MGI:4888042|PMID:21209331) RGD PMID:21209331 MGI:MGI:4888042 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Invs inversin ISO MGI:MGI:1856915 (MGI:MGI:892786|PMID:9192865) RGD PMID:9192865 MGI:MGI:892786 NCBI chr 5:64,031,131...64,180,830
Ensembl chr 5:64,053,946...64,178,759
JBrowse link
G Megf8 multiple EGF-like-domains 8 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5551355|PMID:24052814)
Ensembl
UniProt
RGD
PMID:24052814 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5551355 NCBI chr 1:82,184,671...82,234,045
Ensembl chr 1:82,185,034...82,234,045
JBrowse link
G Nkx2-5 NK2 homeobox 5 ISO
IEA
MGI:MGI:1927227 (MGI:MGI:892786|PMID:9192865)
GO_REF:0000107
RGD
Ensembl
PMID:9192865 GO_REF:0000107, MGI:MGI:892786 NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764
JBrowse link
G Pifo primary cilia formation ISO MGI:MGI:4819764 (MGI:MGI:4819432|PMID:20643351) RGD PMID:20643351 MGI:MGI:4819432 NCBI chr 2:208,616,592...208,633,961
Ensembl chr 2:208,616,589...208,633,945
JBrowse link
left/right axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Arl13b ADP-ribosylation factor like GTPase 13B ISO MGI:MGI:3578151 (MGI:MGI:5430243|PMID:22554696) RGD PMID:22554696 MGI:MGI:5430243 NCBI chr 7:1,122,567...1,188,209
Ensembl chr 7:1,122,567...1,188,209
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO (MGI:MGI:3054669|PMID:15475956) RGD PMID:15475956 MGI:MGI:3054669 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Dll1 delta like canonical Notch ligand 1 ISO
IEA
(MGI:MGI:2661305|PMID:12730124)
GO_REF:0000107
RGD
Ensembl
PMID:12730124 GO_REF:0000107, MGI:MGI:2661305 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 ISO MGI:MGI:3578147 (MGI:MGI:4838374|PMID:20678497) RGD PMID:20678497 MGI:MGI:4838374 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
JBrowse link
G Hspb11 heat shock protein family B (small), member 11 ISO MGI:MGI:4432759|MGI:MGI:5426875 (MGI:MGI:5426280|PMID:22595669) RGD PMID:22595669 MGI:MGI:5426280 NCBI chr 5:126,856,128...126,882,913
Ensembl chr 5:126,856,705...126,882,909
JBrowse link
G Ift172 intraflagellar transport 172 ISO MGI:MGI:2682066|MGI:MGI:3829198 (MGI:MGI:3828200|PMID:18930042), (MGI:MGI:5430243|PMID:22554696) RGD PMID:18930042, PMID:22554696 MGI:MGI:3828200, MGI:MGI:5430243 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Mns1 meiosis-specific nuclear structural 1 ISO MGI:MGI:5425368 (MGI:MGI:5318625|PMID:22396656) RGD PMID:22396656 MGI:MGI:5318625 NCBI chr 8:79,054,240...79,075,119
Ensembl chr 8:79,054,237...79,075,122
JBrowse link
G Notch1 notch receptor 1 ISO UniProtKB:O35516 (MGI:MGI:2661305|PMID:12730124) RGD PMID:12730124 MGI:MGI:2661305 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Notch2 notch receptor 2 ISO
IEA
UniProtKB:Q01705 (MGI:MGI:2661305|PMID:12730124)
GO_REF:0000107
RGD
Ensembl
PMID:12730124 GO_REF:0000107, MGI:MGI:2661305 NCBI chr 2:200,187,184...200,320,403
Ensembl chr 2:200,187,179...200,320,215
JBrowse link
G Pitx2 paired-like homeodomain 2 ISO (MGI:MGI:3054669|PMID:15475956) RGD PMID:15475956 MGI:MGI:3054669 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting ISO (MGI:MGI:4946570|PMID:21307093) RGD PMID:21307093 MGI:MGI:4946570 NCBI chr14:89,047,949...89,193,579
Ensembl chr14:89,060,447...89,179,507
JBrowse link
G Smo smoothened, frizzled class receptor ISO
IEA
MGI:MGI:2137553 (MGI:MGI:1267118|PMID:9636176)
GO_REF:0000107
RGD
Ensembl
PMID:9636176 GO_REF:0000107, MGI:MGI:1267118 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    multicellular organismal process 9055
      pattern specification process 496
        regionalization 392
          left/right pattern formation 26
            embryonic heart tube left/right pattern formation 6
            left/right axis specification 13
Path 2
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        multicellular organism development 5735
          pattern specification process 496
            regionalization 392
              left/right pattern formation 26
                embryonic heart tube left/right pattern formation 6
                left/right axis specification 13
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.