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ONTOLOGY REPORT - ANNOTATIONS


Term:kidney morphogenesis
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Accession:GO:0060993 term browser browse the term
Definition:Morphogenesis of a kidney. A kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine.


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kidney morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GCNT3 glucosaminyl (N-acetyl) transferase 3, mucin type JBrowse link 30 24,481,698 24,487,855 RGD:13508589
G GCNT4 glucosaminyl (N-acetyl) transferase 4 JBrowse link 3 31,198,656 31,222,523 RGD:13508589
G SOX4 SRY-box transcription factor 4 JBrowse link 35 20,098,783 20,101,357 RGD:13508589
G WWTR1 WW domain containing transcription regulator 1 JBrowse link 23 44,277,707 44,409,911 RGD:13508589
G ZMPSTE24 zinc metallopeptidase STE24 JBrowse link 15 2,669,546 2,708,480 RGD:13508589
branch elongation involved in ureteric bud branching term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FGF1 fibroblast growth factor 1 JBrowse link 2 37,467,431 37,554,770 RGD:13508589
branching involved in ureteric bud morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCL2 BCL2 apoptosis regulator JBrowse link 1 13,733,849 13,900,653 RGD:13508589
G BMP4 bone morphogenetic protein 4 JBrowse link 8 29,997,563 30,254,307 RGD:13508589
G CTNNB1 catenin beta 1 JBrowse link 23 10,559,722 10,572,933 RGD:13508589
G DCHS1 dachsous cadherin-related 1 JBrowse link 21 29,927,713 29,955,742 RGD:13508589
G EYA1 EYA transcriptional coactivator and phosphatase 1 JBrowse link 29 20,176,306 20,595,131 RGD:13508589
G FAT4 FAT atypical cadherin 4 JBrowse link 19 15,157,595 15,332,821 RGD:13508589
G FGF8 fibroblast growth factor 8 JBrowse link 28 14,362,407 14,367,109 RGD:13508589
G GDNF glial cell derived neurotrophic factor JBrowse link 4 70,966,694 70,991,860 RGD:13508589
G GLI3 GLI family zinc finger 3 JBrowse link 18 7,800,817 8,071,531 RGD:13508589
G GPC3 glypican 3 JBrowse link X 104,313,426 104,751,215 RGD:13508589
G GREB1L GREB1 like retinoic acid receptor coactivator JBrowse link 7 66,489,124 66,758,207 RGD:13508589
G GZF1 GDNF inducible zinc finger protein 1 JBrowse link 24 260,139 268,861 RGD:13508589
G HOXA11 homeobox A11 JBrowse link 14 40,355,907 40,360,120 RGD:13508589
G ILK integrin linked kinase JBrowse link 21 29,911,326 29,917,972 RGD:13508589
G LHX1 LIM homeobox 1 JBrowse link 9 36,760,890 36,768,345 RGD:13508589
G PAX8 paired box 8 JBrowse link 17 37,307,130 37,331,729 RGD:13508589
G PBX1 PBX homeobox 1 JBrowse link 38 18,378,997 18,703,694 RGD:13508589
G PKD2 polycystin 2, transient receptor potential cation channel JBrowse link 32 11,383,441 11,437,603 RGD:13508589
G SHH sonic hedgehog signaling molecule JBrowse link 16 18,650,553 18,663,571 RGD:13508589
G SIX1 SIX homeobox 1 JBrowse link 8 35,676,705 35,679,534 RGD:13508589
G SMAD4 SMAD family member 4 JBrowse link 1 23,875,989 23,930,027 RGD:13508589
G TCF21 transcription factor 21 JBrowse link 1 26,856,281 26,859,654 RGD:13508589
G WNT4 Wnt family member 4 JBrowse link 2 77,112,045 77,129,702 RGD:13508589
G WNT6 Wnt family member 6 JBrowse link 37 25,452,875 25,457,437 RGD:13508589
G WNT9B Wnt family member 9B JBrowse link 9 10,157,607 10,172,664 RGD:13508589
comma-shaped body morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HES5 hes family bHLH transcription factor 5 JBrowse link 5 57,387,961 57,389,412 RGD:13508589
G LHX1 LIM homeobox 1 JBrowse link 9 36,760,890 36,768,345 RGD:13508589
distal tubule morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KLHL3 kelch like family member 3 JBrowse link 11 25,329,922 25,505,281 RGD:13508589
G WNK4 WNK lysine deficient protein kinase 4 JBrowse link 9 20,224,726 20,241,214 RGD:13508589
establishment of planar polarity involved in nephron morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G WNT9B Wnt family member 9B JBrowse link 9 10,157,607 10,172,664 RGD:13508589
kidney rudiment formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G WNT9B Wnt family member 9B JBrowse link 9 10,157,607 10,172,664 RGD:13508589
mesenchymal stem cell maintenance involved in nephron morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SIX2 SIX homeobox 2 JBrowse link 10 47,399,152 47,403,503 RGD:13508589
G WNT9B Wnt family member 9B JBrowse link 9 10,157,607 10,172,664 RGD:13508589
mesenchymal to epithelial transition involved in metanephros morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 8 29,997,563 30,254,307 RGD:13508589
G GDNF glial cell derived neurotrophic factor JBrowse link 4 70,966,694 70,991,860 RGD:13508589
G GREM1 gremlin 1, DAN family BMP antagonist JBrowse link 30 2,219,535 2,231,868 RGD:13508589
G PAX8 paired box 8 JBrowse link 17 37,307,130 37,331,729 RGD:13508589
G SALL1 spalt like transcription factor 1 JBrowse link 2 64,242,742 64,260,021 RGD:13508589
G SIX2 SIX homeobox 2 JBrowse link 10 47,399,152 47,403,503 RGD:13508589
mesonephric duct formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HNF1B HNF1 homeobox B JBrowse link 9 37,437,992 37,493,200 RGD:13508589
G WNT9B Wnt family member 9B JBrowse link 9 10,157,607 10,172,664 RGD:13508589
mesonephric duct morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GPC3 glypican 3 JBrowse link X 104,313,426 104,751,215 RGD:13508589
G OSR1 odd-skipped related transcription factor 1 JBrowse link 17 14,508,543 14,515,657 RGD:13508589
mesonephric tubule formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SIX1 SIX homeobox 1 JBrowse link 8 35,676,705 35,679,534 RGD:13508589
metanephric comma-shaped body morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PAX8 paired box 8 JBrowse link 17 37,307,130 37,331,729 RGD:13508589
metanephric nephron morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G WNT4 Wnt family member 4 JBrowse link 2 77,112,045 77,129,702 RGD:13508589
metanephric nephron tubule formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PAX8 paired box 8 JBrowse link 17 37,307,130 37,331,729 RGD:13508589
G SOX8 SRY-box transcription factor 8 JBrowse link 6 39,667,941 39,672,716 RGD:13508589
G SOX9 SRY-box transcription factor 9 JBrowse link 9 8,275,049 8,278,172 RGD:13508589
metanephric nephron tubule morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HES5 hes family bHLH transcription factor 5 JBrowse link 5 57,387,961 57,389,412 RGD:13508589
metanephric part of ureteric bud development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CALB1 calbindin 1 JBrowse link 29 35,551,836 35,572,985 RGD:13508589
G FOXJ1 forkhead box J1 JBrowse link 9 4,512,898 4,517,764 RGD:13508589
G PKD2 polycystin 2, transient receptor potential cation channel JBrowse link 32 11,383,441 11,437,603 RGD:13508589
metanephric renal vesicle morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LHX1 LIM homeobox 1 JBrowse link 9 36,760,890 36,768,345 RGD:13508589
metanephric S-shaped body morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LHX1 LIM homeobox 1 JBrowse link 9 36,760,890 36,768,345 RGD:13508589
G PAX8 paired box 8 JBrowse link 17 37,307,130 37,331,729 RGD:13508589
G PKD2 polycystin 2, transient receptor potential cation channel JBrowse link 32 11,383,441 11,437,603 RGD:13508589
metanephros morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTNNB1 catenin beta 1 JBrowse link 23 10,559,722 10,572,933 RGD:13508589
G FGF10 fibroblast growth factor 10 JBrowse link 4 65,851,130 65,930,944 RGD:13508589
G FRAS1 Fraser extracellular matrix complex subunit 1 JBrowse link 32 2,558,442 2,993,199 RGD:13508589
negative regulation of branch elongation involved in ureteric bud branching by BMP signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 8 29,997,563 30,254,307 RGD:13508589
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 2 28,068,143 28,098,445 RGD:13508589
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 2 28,068,143 28,098,445 RGD:13508589
negative regulation of mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HNF1B HNF1 homeobox B JBrowse link 9 37,437,992 37,493,200 RGD:13508589
negative regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PAX8 paired box 8 JBrowse link 17 37,307,130 37,331,729 RGD:13508589
negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTNNB1 catenin beta 1 JBrowse link 23 10,559,722 10,572,933 RGD:13508589
G STAT4 signal transducer and activator of transcription 4 JBrowse link 37 1,566,563 1,685,378 RGD:13508589
negative regulation of metanephric comma-shaped body morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 8 29,997,563 30,254,307 RGD:13508589
negative regulation of metanephric S-shaped body morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 8 29,997,563 30,254,307 RGD:13508589
nephron tubule formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTNNB1 catenin beta 1 JBrowse link 23 10,559,722 10,572,933 RGD:13508589
G WNT6 Wnt family member 6 JBrowse link 37 25,452,875 25,457,437 RGD:13508589
positive regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AGT angiotensinogen JBrowse link 4 8,681,192 8,694,059 RGD:13508589
G AGTR2 angiotensin II receptor type 2 JBrowse link X 88,703,551 88,708,451 RGD:13508589
G GDNF glial cell derived neurotrophic factor JBrowse link 4 70,966,694 70,991,860 RGD:13508589
G GREM1 gremlin 1, DAN family BMP antagonist JBrowse link 30 2,219,535 2,231,868 RGD:13508589
G HOXB7 homeobox B7 JBrowse link 9 24,870,037 24,874,517 RGD:13508589
G LHX1 LIM homeobox 1 JBrowse link 9 36,760,890 36,768,345 RGD:13508589
G PAX8 paired box 8 JBrowse link 17 37,307,130 37,331,729 RGD:13508589
G SIX1 SIX homeobox 1 JBrowse link 8 35,676,705 35,679,534 RGD:13508589
G SIX4 SIX homeobox 4 JBrowse link 8 35,735,893 35,748,976 RGD:13508589
G SOX8 SRY-box transcription factor 8 JBrowse link 6 39,667,941 39,672,716 RGD:13508589
G SOX9 SRY-box transcription factor 9 JBrowse link 9 8,275,049 8,278,172 RGD:13508589
G WNT2B Wnt family member 2B JBrowse link 17 63,034,719 63,054,369 RGD:13508589
positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GDNF glial cell derived neurotrophic factor JBrowse link 4 70,966,694 70,991,860 RGD:13508589
G LIF LIF interleukin 6 family cytokine JBrowse link 26 23,400,226 23,418,538 RGD:13508589
G PAX8 paired box 8 JBrowse link 17 37,307,130 37,331,729 RGD:13508589
positive regulation of ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 2 28,068,143 28,098,445 RGD:13508589
G GDNF glial cell derived neurotrophic factor JBrowse link 4 70,966,694 70,991,860 RGD:13508589
G SIX1 SIX homeobox 1 JBrowse link 8 35,676,705 35,679,534 RGD:13508589
G SIX4 SIX homeobox 4 JBrowse link 8 35,735,893 35,748,976 RGD:13508589
primary ureteric bud growth term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LZTS2 leucine zipper tumor suppressor 2 JBrowse link 28 13,683,029 13,693,194 RGD:13508589
pronephric duct morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AHI1 Abelson helper integration site 1 JBrowse link 1 27,966,101 28,199,163 RGD:13508589
pronephric field specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PAX8 paired box 8 JBrowse link 17 37,307,130 37,331,729 RGD:13508589
pronephric nephron tubule morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AHI1 Abelson helper integration site 1 JBrowse link 1 27,966,101 28,199,163 RGD:13508589
regulation of branch elongation involved in ureteric bud branching term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HNF1B HNF1 homeobox B JBrowse link 9 37,437,992 37,493,200 RGD:13508589
G SIX1 SIX homeobox 1 JBrowse link 8 35,676,705 35,679,534 RGD:13508589
G SIX4 SIX homeobox 4 JBrowse link 8 35,735,893 35,748,976 RGD:13508589
regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SIX2 SIX homeobox 2 JBrowse link 10 47,399,152 47,403,503 RGD:13508589
regulation of kidney size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LRRK2 leucine rich repeat kinase 2 JBrowse link 27 13,282,824 13,420,917 RGD:13508589
regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G WNT9B Wnt family member 9B JBrowse link 9 10,157,607 10,172,664 RGD:13508589
regulation of metanephros size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AGTR2 angiotensin II receptor type 2 JBrowse link X 88,703,551 88,708,451 RGD:13508589
regulation of pronephros size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HNF1B HNF1 homeobox B JBrowse link 9 37,437,992 37,493,200 RGD:13508589
renal vesicle formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTNNB1 catenin beta 1 JBrowse link 23 10,559,722 10,572,933 RGD:13508589
G WNT4 Wnt family member 4 JBrowse link 2 77,112,045 77,129,702 RGD:13508589
renal vesicle induction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SOX8 SRY-box transcription factor 8 JBrowse link 6 39,667,941 39,672,716 RGD:13508589
G SOX9 SRY-box transcription factor 9 JBrowse link 9 8,275,049 8,278,172 RGD:13508589
G WNT4 Wnt family member 4 JBrowse link 2 77,112,045 77,129,702 RGD:13508589
renal vesicle morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LHX1 LIM homeobox 1 JBrowse link 9 36,760,890 36,768,345 RGD:13508589
S-shaped body morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HES5 hes family bHLH transcription factor 5 JBrowse link 5 57,387,961 57,389,412 RGD:13508589
G LHX1 LIM homeobox 1 JBrowse link 9 36,760,890 36,768,345 RGD:13508589
specification of anterior mesonephric tubule identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G OSR1 odd-skipped related transcription factor 1 JBrowse link 17 14,508,543 14,515,657 RGD:13508589
specification of loop of Henle identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HES5 hes family bHLH transcription factor 5 JBrowse link 5 57,387,961 57,389,412 RGD:13508589
G IRX1 iroquois homeobox 1 JBrowse link 34 9,537,231 9,544,029 RGD:13508589
G IRX3 iroquois homeobox 3 JBrowse link 2 61,555,608 61,559,185 RGD:13508589
specification of posterior mesonephric tubule identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G OSR1 odd-skipped related transcription factor 1 JBrowse link 17 14,508,543 14,515,657 RGD:13508589
ureteric bud elongation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HNF1B HNF1 homeobox B JBrowse link 9 37,437,992 37,493,200 RGD:13508589
ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 2 28,068,143 28,098,445 RGD:13508589
G GDNF glial cell derived neurotrophic factor JBrowse link 4 70,966,694 70,991,860 RGD:13508589
G GREM1 gremlin 1, DAN family BMP antagonist JBrowse link 30 2,219,535 2,231,868 RGD:13508589
G HS2ST1 heparan sulfate 2-O-sulfotransferase 1 JBrowse link 6 61,124,393 61,298,912 RGD:13508589
ureteric bud invasion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FMN1 formin 1 JBrowse link 30 1,782,726 2,215,449 RGD:13508589
G KIF26B kinesin family member 26B JBrowse link 7 36,087,483 36,529,334 RGD:13508589
ureteric bud morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G WNT11 Wnt family member 11 JBrowse link 21 22,442,496 22,463,040 RGD:13508589

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14250
    developmental process 3768
      anatomical structure morphogenesis 1699
        animal organ morphogenesis 652
          kidney morphogenesis 62
            kidney rudiment formation + 2
            mesonephros morphogenesis + 1
            metanephros morphogenesis + 23
            nephron morphogenesis + 52
            pronephros morphogenesis + 2
            regulation of cell proliferation involved in kidney morphogenesis 0
            regulation of kidney size + 3
Path 2
Term Annotations click to browse term
  biological_process 14250
    developmental process 3768
      anatomical structure development 3480
        multicellular organism development 3091
          system development 2821
            urogenital system development 213
              renal system development 187
                kidney development 180
                  kidney morphogenesis 62
                    kidney rudiment formation + 2
                    mesonephros morphogenesis + 1
                    metanephros morphogenesis + 23
                    nephron morphogenesis + 52
                    pronephros morphogenesis + 2
                    regulation of cell proliferation involved in kidney morphogenesis 0
                    regulation of kidney size + 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.