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ONTOLOGY REPORT - ANNOTATIONS


Term:kidney morphogenesis
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Accession:GO:0060993 term browser browse the term
Definition:Morphogenesis of a kidney. A kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine.


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kidney morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GCNT1 glucosaminyl (N-acetyl) transferase 1 JBrowse link 1 229,429,020 229,602,834 RGD:14298760
G GCNT4 glucosaminyl (N-acetyl) transferase 4 JBrowse link 2 84,105,652 84,135,122 RGD:14298760
G NPHP3 nephrocystin 3 JBrowse link 13 73,843,770 73,901,020 RGD:14298760
G VANGL2 VANGL planar cell polarity protein 2 JBrowse link 4 90,051,994 90,080,701 RGD:14298760
G WWTR1 WW domain containing transcription regulator 1 JBrowse link 13 89,742,980 89,889,547 RGD:14298760
G ZMPSTE24 zinc metallopeptidase STE24 JBrowse link 6 96,008,307 96,057,131 RGD:14298760
branch elongation involved in ureteric bud branching term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FGF1 fibroblast growth factor 1 JBrowse link 2 144,133,846 144,241,345 RGD:14298760
branching involved in ureteric bud morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADAMTS16 ADAM metallopeptidase with thrombospondin type 1 motif 16 JBrowse link 16 76,326,718 76,491,050 RGD:14298760
G BMP2 bone morphogenetic protein 2 JBrowse link 17 15,750,487 15,762,982 RGD:14298760
G BMP4 bone morphogenetic protein 4 JBrowse link 1 183,415,989 183,422,888 RGD:14298760
G CTNNBIP1 catenin beta interacting protein 1 JBrowse link 6 70,184,935 70,241,560 RGD:14298760
G DCHS1 dachsous cadherin-related 1 JBrowse link 9 3,099,525 3,134,825 RGD:14298760
G DLG1 discs large MAGUK scaffold protein 1 JBrowse link 13 132,819,931 133,084,880 RGD:14298760
G EYA1 EYA transcriptional coactivator and phosphatase 1 JBrowse link 4 63,970,939 64,328,107 RGD:14298760
G GDNF glial cell derived neurotrophic factor JBrowse link 16 22,936,602 22,965,929 RGD:14298760
G GLI3 GLI family zinc finger 3 JBrowse link 18 52,403,463 52,697,906 RGD:14298760
G GPC3 glypican 3 JBrowse link X 109,536,495 109,973,605 RGD:14298760
G GREB1L GREB1 like retinoic acid receptor coactivator JBrowse link 6 106,545,882 106,693,711 RGD:14298760
G HOXA11 homeobox A11 JBrowse link 18 45,388,523 45,392,190 RGD:14298760
G ILK integrin linked kinase JBrowse link 9 3,145,647 3,152,097 RGD:14298760
G LHX1 LIM homeobox 1 JBrowse link 12 38,450,708 38,457,583 RGD:14298760
G PAX2 paired box 2 JBrowse link 14 111,822,334 111,914,950 RGD:14298760
G PKD2 polycystin 2, transient receptor potential cation channel JBrowse link 8 131,002,973 131,058,932 RGD:14298760
G PTCH1 patched 1 JBrowse link 10 26,627,165 26,703,225 RGD:14298760
G SHH sonic hedgehog signaling molecule JBrowse link 18 2,546,202 2,555,484 RGD:14298760
G SIX1 SIX homeobox 1 JBrowse link 1 189,620,430 189,624,652 RGD:14298760
G SMAD4 SMAD family member 4 JBrowse link 1 100,521,843 100,633,501 RGD:14298760
G SOX9 SRY-box transcription factor 9 JBrowse link 12 8,642,154 8,647,315 RGD:14298760
G TCF21 transcription factor 21 JBrowse link 1 29,975,280 29,978,273 RGD:14298760
G WNT1 Wnt family member 1 JBrowse link 5 15,010,607 15,015,007 RGD:14298760
G WNT6 Wnt family member 6 JBrowse link 15 120,901,471 120,917,359 RGD:14298760
G WNT9B Wnt family member 9B JBrowse link 12 17,709,046 17,733,434 RGD:14298760
G WT1 WT1 transcription factor JBrowse link 2 28,411,467 28,456,007 RGD:14298760
comma-shaped body morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HES1 hes family bHLH transcription factor 1 JBrowse link 13 131,135,970 131,137,865 RGD:14298760
G HES5 hes family bHLH transcription factor 5 JBrowse link 6 64,409,110 64,410,541 RGD:14298760
G LHX1 LIM homeobox 1 JBrowse link 12 38,450,708 38,457,583 RGD:14298760
dichotomous subdivision of terminal units involved in ureteric bud branching term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FOXD1 forkhead box D1 JBrowse link 2 82,607,113 82,612,005 RGD:14298760
distal tubule morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KLHL3 kelch like family member 3 JBrowse link 2 139,632,868 139,890,079 RGD:14298760
establishment of planar polarity involved in nephron morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G WNT9B Wnt family member 9B JBrowse link 12 17,709,046 17,733,434 RGD:14298760
kidney rudiment formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G WNT9B Wnt family member 9B JBrowse link 12 17,709,046 17,733,434 RGD:14298760
mesenchymal stem cell maintenance involved in nephron morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SIX2 SIX homeobox 2 JBrowse link 3 95,460,046 95,463,428 RGD:14298760
G WNT9B Wnt family member 9B JBrowse link 12 17,709,046 17,733,434 RGD:14298760
mesenchymal to epithelial transition involved in metanephric renal vesicle formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMO smoothened, frizzled class receptor JBrowse link 18 19,450,730 19,478,796 RGD:14298760
mesenchymal to epithelial transition involved in metanephros morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 1 183,415,989 183,422,888 RGD:14298760
G GDNF glial cell derived neurotrophic factor JBrowse link 16 22,936,602 22,965,929 RGD:14298760
G GREM1 gremlin 1, DAN family BMP antagonist JBrowse link 1 136,617,041 136,629,293 RGD:14298760
G SALL1 spalt like transcription factor 1 JBrowse link 6 33,731,666 33,748,698 RGD:14298760
G SIX2 SIX homeobox 2 JBrowse link 3 95,460,046 95,463,428 RGD:14298760
mesonephric duct formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HNF1B HNF1 homeobox B JBrowse link 12 39,143,119 39,201,631 RGD:14298760
G WNT9B Wnt family member 9B JBrowse link 12 17,709,046 17,733,434 RGD:14298760
mesonephric duct morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GPC3 glypican 3 JBrowse link X 109,536,495 109,973,605 RGD:14298760
G OSR1 odd-skipped related transcription factor 1 JBrowse link 3 118,368,471 118,765,107 RGD:14298760
mesonephric tubule formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SIX1 SIX homeobox 1 JBrowse link 1 189,620,430 189,624,652 RGD:14298760
metanephric nephron tubule formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SOX8 SRY-box transcription factor 8 JBrowse link 3 40,825,151 40,830,085 RGD:14298760
G SOX9 SRY-box transcription factor 9 JBrowse link 12 8,642,154 8,647,315 RGD:14298760
metanephric nephron tubule morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HES1 hes family bHLH transcription factor 1 JBrowse link 13 131,135,970 131,137,865 RGD:14298760
G HES5 hes family bHLH transcription factor 5 JBrowse link 6 64,409,110 64,410,541 RGD:14298760
G LGR4 leucine rich repeat containing G protein-coupled receptor 4 JBrowse link 2 32,871,837 32,979,150 RGD:14298760
metanephric part of ureteric bud development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CALB1 calbindin 1 JBrowse link 4 46,701,276 46,723,548 RGD:14298760
G FOXJ1 forkhead box J1 JBrowse link 12 5,307,370 5,312,117 RGD:14298760
G PKD2 polycystin 2, transient receptor potential cation channel JBrowse link 8 131,002,973 131,058,932 RGD:14298760
metanephric renal vesicle morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LHX1 LIM homeobox 1 JBrowse link 12 38,450,708 38,457,583 RGD:14298760
metanephric S-shaped body morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LHX1 LIM homeobox 1 JBrowse link 12 38,450,708 38,457,583 RGD:14298760
G PKD2 polycystin 2, transient receptor potential cation channel JBrowse link 8 131,002,973 131,058,932 RGD:14298760
G WT1 WT1 transcription factor JBrowse link 2 28,411,467 28,456,007 RGD:14298760
metanephros morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FGF10 fibroblast growth factor 10 JBrowse link 16 28,695,465 28,779,953 RGD:14298760
negative regulation of branch elongation involved in ureteric bud branching by BMP signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 1 183,415,989 183,422,888 RGD:14298760
negative regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TACSTD2 tumor associated calcium signal transducer 2 JBrowse link 6 153,859,488 153,861,508 RGD:14298760
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 10 63,367,684 63,397,977 RGD:14298760
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 10 63,367,684 63,397,977 RGD:14298760
negative regulation of mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HNF1B HNF1 homeobox B JBrowse link 12 39,143,119 39,201,631 RGD:14298760
negative regulation of metanephric comma-shaped body morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 1 183,415,989 183,422,888 RGD:14298760
negative regulation of metanephric S-shaped body morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 1 183,415,989 183,422,888 RGD:14298760
nephron tubule formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G WNT6 Wnt family member 6 JBrowse link 15 120,901,471 120,917,359 RGD:14298760
positive regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AGT angiotensinogen JBrowse link 14 59,643,030 59,656,835 RGD:14298760
G AGTR2 angiotensin II receptor type 2 JBrowse link X 95,267,709 95,272,237 RGD:14298760
G GDNF glial cell derived neurotrophic factor JBrowse link 16 22,936,602 22,965,929 RGD:14298760
G GREM1 gremlin 1, DAN family BMP antagonist JBrowse link 1 136,617,041 136,629,293 RGD:14298760
G HOXB7 homeobox B7 JBrowse link 12 24,861,165 24,864,675 RGD:14298760
G LGR4 leucine rich repeat containing G protein-coupled receptor 4 JBrowse link 2 32,871,837 32,979,150 RGD:14298760
G LHX1 LIM homeobox 1 JBrowse link 12 38,450,708 38,457,583 RGD:14298760
G NOG noggin JBrowse link 12 32,891,321 32,892,206 RGD:14298760
G SIX1 SIX homeobox 1 JBrowse link 1 189,620,430 189,624,652 RGD:14298760
G SIX4 SIX homeobox 4 JBrowse link 1 189,670,390 189,682,378 RGD:14298760
G SMO smoothened, frizzled class receptor JBrowse link 18 19,450,730 19,478,796 RGD:14298760
G SOX8 SRY-box transcription factor 8 JBrowse link 3 40,825,151 40,830,085 RGD:14298760
G SOX9 SRY-box transcription factor 9 JBrowse link 12 8,642,154 8,647,315 RGD:14298760
G WNT2B Wnt family member 2B JBrowse link 4 107,906,141 107,923,343 RGD:14298760
positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GDNF glial cell derived neurotrophic factor JBrowse link 16 22,936,602 22,965,929 RGD:14298760
G LIF LIF interleukin 6 family cytokine JBrowse link 14 47,221,540 47,239,513 RGD:14298760
positive regulation of metanephric ureteric bud development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G WT1 WT1 transcription factor JBrowse link 2 28,411,467 28,456,007 RGD:14298760
positive regulation of ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 10 63,367,684 63,397,977 RGD:14298760
G GDNF glial cell derived neurotrophic factor JBrowse link 16 22,936,602 22,965,929 RGD:14298760
G SIX1 SIX homeobox 1 JBrowse link 1 189,620,430 189,624,652 RGD:14298760
G SIX4 SIX homeobox 4 JBrowse link 1 189,670,390 189,682,378 RGD:14298760
primary ureteric bud growth term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LZTS2 leucine zipper tumor suppressor 2 JBrowse link 14 112,078,211 112,088,484 RGD:14298760
pronephric duct morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AHI1 Abelson helper integration site 1 JBrowse link 1 28,566,279 28,760,471 RGD:14298760
pronephric nephron tubule morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AHI1 Abelson helper integration site 1 JBrowse link 1 28,566,279 28,760,471 RGD:14298760
regulation of branch elongation involved in ureteric bud branching term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HNF1B HNF1 homeobox B JBrowse link 12 39,143,119 39,201,631 RGD:14298760
G SIX1 SIX homeobox 1 JBrowse link 1 189,620,430 189,624,652 RGD:14298760
G SIX4 SIX homeobox 4 JBrowse link 1 189,670,390 189,682,378 RGD:14298760
regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SIX2 SIX homeobox 2 JBrowse link 3 95,460,046 95,463,428 RGD:14298760
regulation of kidney size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ASXL1 ASXL transcriptional regulator 1 JBrowse link 17 35,985,978 36,067,122 RGD:14298760
G LRRK2 leucine rich repeat kinase 2 JBrowse link 5 71,800,337 71,945,828 RGD:14298760
regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G WNT9B Wnt family member 9B JBrowse link 12 17,709,046 17,733,434 RGD:14298760
regulation of metanephros size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AGTR2 angiotensin II receptor type 2 JBrowse link X 95,267,709 95,272,237 RGD:14298760
G PAX2 paired box 2 JBrowse link 14 111,822,334 111,914,950 RGD:14298760
regulation of pronephros size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HNF1B HNF1 homeobox B JBrowse link 12 39,143,119 39,201,631 RGD:14298760
renal vesicle induction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SOX8 SRY-box transcription factor 8 JBrowse link 3 40,825,151 40,830,085 RGD:14298760
G SOX9 SRY-box transcription factor 9 JBrowse link 12 8,642,154 8,647,315 RGD:14298760
S-shaped body morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HES1 hes family bHLH transcription factor 1 JBrowse link 13 131,135,970 131,137,865 RGD:14298760
G HES5 hes family bHLH transcription factor 5 JBrowse link 6 64,409,110 64,410,541 RGD:14298760
specification of anterior mesonephric tubule identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G OSR1 odd-skipped related transcription factor 1 JBrowse link 3 118,368,471 118,765,107 RGD:14298760
specification of loop of Henle identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HES5 hes family bHLH transcription factor 5 JBrowse link 6 64,409,110 64,410,541 RGD:14298760
G IRX1 iroquois homeobox 1 JBrowse link 16 77,695,704 77,701,089 RGD:14298760
G IRX2 iroquois homeobox 2 JBrowse link 16 78,305,869 78,322,776 RGD:14298760
G IRX3 iroquois homeobox 3 JBrowse link 6 31,044,919 31,049,067 RGD:14298760
specification of posterior mesonephric tubule identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G OSR1 odd-skipped related transcription factor 1 JBrowse link 3 118,368,471 118,765,107 RGD:14298760
ureteric bud elongation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HNF1B HNF1 homeobox B JBrowse link 12 39,143,119 39,201,631 RGD:14298760
ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 10 63,367,684 63,397,977 RGD:14298760
G GDNF glial cell derived neurotrophic factor JBrowse link 16 22,936,602 22,965,929 RGD:14298760
G GREM1 gremlin 1, DAN family BMP antagonist JBrowse link 1 136,617,041 136,629,293 RGD:14298760
G HS2ST1 heparan sulfate 2-O-sulfotransferase 1 JBrowse link 4 129,101,900 129,258,372 RGD:14298760
G NOG noggin JBrowse link 12 32,891,321 32,892,206 RGD:14298760
ureteric bud invasion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KIF26B kinesin family member 26B JBrowse link 10 17,708,365 18,220,052 RGD:14298760
ureteric bud morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HES1 hes family bHLH transcription factor 1 JBrowse link 13 131,135,970 131,137,865 RGD:14298760
G TACSTD2 tumor associated calcium signal transducer 2 JBrowse link 6 153,859,488 153,861,508 RGD:14298760
G WNT11 Wnt family member 11 JBrowse link 9 10,413,182 10,435,158 RGD:14298760

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14973
    developmental process 4208
      anatomical structure morphogenesis 1920
        animal organ morphogenesis 760
          kidney morphogenesis 67
            kidney rudiment formation + 1
            mesonephros morphogenesis + 1
            metanephros morphogenesis + 22
            nephron morphogenesis + 56
            pronephros morphogenesis + 2
            regulation of cell proliferation involved in kidney morphogenesis 0
            regulation of kidney size + 5
Path 2
Term Annotations click to browse term
  biological_process 14973
    developmental process 4208
      anatomical structure development 3899
        multicellular organism development 3457
          system development 3156
            urogenital system development 236
              renal system development 201
                kidney development 194
                  kidney morphogenesis 67
                    kidney rudiment formation + 1
                    mesonephros morphogenesis + 1
                    metanephros morphogenesis + 22
                    nephron morphogenesis + 56
                    pronephros morphogenesis + 2
                    regulation of cell proliferation involved in kidney morphogenesis 0
                    regulation of kidney size + 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.