Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:trabecula morphogenesis
go back to main search page
Accession:GO:0061383 term browser browse the term
Definition:The process of shaping a trabecula in an organ. A trabecula is a small, often microscopic, tissue element in the form of a small beam, strut or rod, which generally has a mechanical function. Trabecula are usually but not necessarily, composed of dense collagenous tissue.


show annotations for term's descendants           Sort by:
 
trabecula morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rhoa ras homolog family member A ISO (MGI:MGI:5297297|PMID:22019888) RGD PMID:22019888 MGI:MGI:5297297 NCBI chr 8:117,082,440...117,116,244
Ensembl chr 8:117,106,576...117,116,167
JBrowse link
bone trabecula formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a1 collagen type I alpha 1 chain ISO MGI:MGI:97009 (MGI:MGI:3710444|PMID:17440987) RGD PMID:17440987 MGI:MGI:3710444 NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
JBrowse link
G Fbn2 fibrillin 2 ISO (MGI:MGI:4836762|PMID:20855508) RGD PMID:20855508 MGI:MGI:4836762 NCBI chr18:53,068,495...53,272,254
Ensembl chr18:53,068,495...53,181,503
JBrowse link
G Mmp2 matrix metallopeptidase 2 ISO
IEA
MGI:MGI:88467 (MGI:MGI:3710444|PMID:17440987)
GO_REF:0000107
RGD
Ensembl
PMID:17440987 GO_REF:0000107, MGI:MGI:3710444 NCBI chr19:15,542,771...15,570,589
Ensembl chr19:15,542,765...15,570,611
JBrowse link
G Msx2 msh homeobox 2 ISO
IEA
MGI:MGI:1926381 (MGI:MGI:1355063|PMID:10742104)
GO_REF:0000107
RGD
Ensembl
PMID:10742104 GO_REF:0000107, MGI:MGI:1355063 NCBI chr17:11,683,862...11,689,527
Ensembl chr17:11,683,862...11,689,527
JBrowse link
G Ppargc1b PPARG coactivator 1 beta ISO (MGI:MGI:3838421|PMID:19252502) RGD PMID:19252502 MGI:MGI:3838421 NCBI chr18:56,626,725...56,650,524
Ensembl chr18:56,626,712...56,728,968
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 ISO
IEA
MGI:MGI:3045799 (MGI:MGI:3040721|PMID:14976225)
GO_REF:0000107
RGD
Ensembl
PMID:14976225 GO_REF:0000107, MGI:MGI:3040721 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
G Thbs3 thrombospondin 3 ISO MGI:MGI:3581964 (MGI:MGI:3581317|PMID:15964815) RGD PMID:15964815 MGI:MGI:3581317 NCBI chr 2:188,528,979...188,540,738
Ensembl chr 2:188,528,979...188,540,736
JBrowse link
G Vegfa vascular endothelial growth factor A ISO MGI:MGI:1931048 (MGI:MGI:5461755|PMID:22886301) RGD PMID:22886301 MGI:MGI:5461755 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
G Wnt10b Wnt family member 10B ISO MGI:MGI:3582610 (MGI:MGI:3574150|PMID:15728361) RGD PMID:15728361 MGI:MGI:3574150 NCBI chr 7:140,448,284...140,466,159
Ensembl chr 7:140,448,465...140,454,268
JBrowse link
bone trabecula morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr3 fibroblast growth factor receptor 3 ISO MGI:MGI:2135670 (MGI:MGI:4437389|PMID:20053668) RGD PMID:20053668 MGI:MGI:4437389 NCBI chr14:82,272,322...82,287,739
Ensembl chr14:82,273,070...82,287,706
JBrowse link
G Sbno2 strawberry notch homolog 2 ISO MGI:MGI:5551983 (MGI:MGI:5522615|PMID:23980096) RGD PMID:23980096 MGI:MGI:5522615 NCBI chr 7:12,471,805...12,515,700
Ensembl chr 7:12,471,824...12,518,654
JBrowse link
G Vegfa vascular endothelial growth factor A ISO MGI:MGI:1931048 (MGI:MGI:5461755|PMID:22886301) RGD PMID:22886301 MGI:MGI:5461755 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
heart trabecula formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 ISO
IEA
MGI:MGI:3609982 (MGI:MGI:3776329|PMID:18267097)
GO_REF:0000107
RGD
Ensembl
PMID:18267097 GO_REF:0000107, MGI:MGI:3776329 NCBI chr11:25,342,119...25,350,938
Ensembl chr11:25,342,126...25,350,974
JBrowse link
G Adgrg6 adhesion G protein-coupled receptor G6 ISO
IBA
(MGI:MGI:5516409|PMID:24082093)
PMID:21873635
RGD PMID:24082093, PMID:21873635 MGI:MGI:5516409, RGD:13792537 NCBI chr 1:8,593,342...8,751,540
Ensembl chr 1:8,593,075...8,751,198
JBrowse link
G Bmp10 bone morphogenetic protein 10 ISO
IEA
(MGI:MGI:3040529|PMID:15073151)
GO_REF:0000107
RGD
Ensembl
PMID:15073151 GO_REF:0000107, MGI:MGI:3040529 NCBI chr 4:119,224,906...119,230,534
Ensembl chr 4:119,225,040...119,230,728
JBrowse link
G Cav3 caveolin 3 ISO MGI:MGI:2684578 (MGI:MGI:3849772|PMID:19535499) RGD PMID:19535499 MGI:MGI:3849772 NCBI chr 4:144,382,945...144,398,919
Ensembl chr 4:144,382,945...144,398,917
JBrowse link
G Egln1 egl-9 family hypoxia-inducible factor 1 ISO MGI:MGI:3690045 (MGI:MGI:3689683|PMID:16966370) RGD PMID:16966370 MGI:MGI:3689683 NCBI chr19:57,660,194...57,701,158
Ensembl chr19:57,662,278...57,699,113
JBrowse link
G Fhl2 four and a half LIM domains 2 ISO (PMID:15509787) RGD PMID:15509787 NCBI chr 9:49,920,611...49,994,906
Ensembl chr 9:49,920,854...49,950,093
JBrowse link
G Fkbp1a FKBP prolyl isomerase 1A ISO (MGI:MGI:1195585|PMID:9461216) RGD PMID:9461216 MGI:MGI:1195585 NCBI chr 3:147,042,944...147,062,725
Ensembl chr 3:147,042,944...147,062,724
JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 ISO (MGI:MGI:3703467|PMID:17259303) RGD PMID:17259303 MGI:MGI:3703467 NCBI chr 1:29,191,170...29,201,257
Ensembl chr 1:29,191,192...29,201,531
JBrowse link
G Nkx2-5 NK2 homeobox 5 ISO
IEA
(MGI:MGI:3773736|PMID:16510504)
GO_REF:0000107
RGD
Ensembl
PMID:16510504 GO_REF:0000107, MGI:MGI:3773736 NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764
JBrowse link
G Ovol2 ovo-like zinc finger 2 ISO MGI:MGI:3777011 (MGI:MGI:3776202|PMID:17573777) RGD PMID:17573777 MGI:MGI:3776202 NCBI chr 3:138,433,990...138,464,511
Ensembl chr 3:138,433,990...138,462,063
JBrowse link
G Rbp4 retinol binding protein 4 ISO (MGI:MGI:2655947|PMID:12663486) RGD PMID:12663486 MGI:MGI:2655947 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO MGI:MGI:109249 (MGI:MGI:3776329|PMID:18267097) RGD PMID:18267097 MGI:MGI:3776329 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Srf serum response factor ISO MGI:MGI:3522206|MGI:MGI:3522214 (MGI:MGI:3513738|PMID:15569937) RGD PMID:15569937 MGI:MGI:3513738 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
G Tek TEK receptor tyrosine kinase ISO (MGI:MGI:68132|PMID:7958865) RGD PMID:7958865 MGI:MGI:68132 NCBI chr 5:113,725,717...113,852,799
Ensembl chr 5:113,725,717...113,852,799
JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 ISO (MGI:MGI:2663364|PMID:12773577) RGD PMID:12773577 MGI:MGI:2663364 NCBI chr14:3,506,416...3,680,508
Ensembl chr14:3,506,339...3,682,545
JBrowse link
heart trabecula morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp5 bone morphogenetic protein 5 ISO UniProtKB:P23359 (MGI:MGI:1332253|PMID:10079236) RGD PMID:10079236 MGI:MGI:1332253 NCBI chr 8:82,669,466...82,950,273
Ensembl chr 8:82,878,941...82,950,273
JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO UniProtKB:P49003 (MGI:MGI:1332253|PMID:10079236) RGD PMID:10079236 MGI:MGI:1332253 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Naca nascent polypeptide associated complex subunit alpha ISO (MGI:MGI:4867362|PMID:21071677) RGD PMID:21071677 MGI:MGI:4867362 NCBI chr 7:2,458,283...2,470,674
Ensembl chr 7:2,458,264...2,470,674
JBrowse link
G Nfatc1 nuclear factor of activated T-cells 1 ISO MGI:MGI:2181766 (MGI:MGI:1197816|PMID:9515963) RGD PMID:9515963 MGI:MGI:1197816 NCBI chr18:77,203,517...77,322,690
Ensembl chr18:77,203,525...77,322,690
JBrowse link
G Nog noggin ISO
IEA
(MGI:MGI:3783944|PMID:17218603)
GO_REF:0000107
RGD
Ensembl
PMID:17218603 GO_REF:0000107, MGI:MGI:3783944 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Notch1 notch receptor 1 ISO (MGI:MGI:4837019|PMID:20890042) RGD PMID:20890042 MGI:MGI:4837019 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G S1pr1 sphingosine-1-phosphate receptor 1 ISO
ISS
(MGI:MGI:5049789|PMID:21668976)
GO_REF:0000024
RGD
UniProt
PMID:21668976 GO_REF:0000024, MGI:MGI:5049789 NCBI chr 2:218,654,406...218,658,761
Ensembl chr 2:218,654,554...218,658,761
JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 ISO MGI:MGI:2155441 (MGI:MGI:85697|PMID:9030684) RGD PMID:9030684 MGI:MGI:85697 NCBI chr 6:3,105,443...3,182,977
Ensembl chr 6:3,104,861...3,182,996
JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 ISO (MGI:MGI:2663364|PMID:12773577) RGD PMID:12773577 MGI:MGI:2663364 NCBI chr14:3,506,416...3,680,508
Ensembl chr14:3,506,339...3,682,545
JBrowse link
negative regulation of bone trabecula formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chad chondroadherin ISO
IEA
MGI:MGI:5529270 (MGI:MGI:5525032|PMID:23755099)
GO_REF:0000107
RGD
Ensembl
PMID:23755099 GO_REF:0000107, MGI:MGI:5525032 NCBI chr10:82,290,296...82,296,146
Ensembl chr10:82,292,110...82,296,651
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist ISO (PMID:15539560) RGD PMID:15539560 NCBI chr 3:105,203,309...105,214,989
Ensembl chr 3:105,203,309...105,214,989
JBrowse link
semaphorin-plexin signaling pathway involved in bone trabecula morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plxnb1 plexin B1 ISO (MGI:MGI:5297297|PMID:22019888) RGD PMID:22019888 MGI:MGI:5297297 NCBI chr 8:117,832,826...117,858,515
Ensembl chr 8:117,836,701...117,856,689
JBrowse link
G Sema4d semaphorin 4D ISO (MGI:MGI:5297297|PMID:22019888) RGD PMID:22019888 MGI:MGI:5297297 NCBI chr17:13,516,276...13,538,513
Ensembl chr17:13,488,376...13,553,974
JBrowse link
spleen trabecula formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc40a1 solute carrier family 40 member 1 ISO MGI:MGI:1889622 (MGI:MGI:3578034|PMID:15342464) RGD PMID:15342464 MGI:MGI:3578034 NCBI chr 9:52,819,451...52,830,461
Ensembl chr 9:52,894,365...52,912,293
JBrowse link
ventricular trabecula myocardium morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A ISO (MGI:MGI:3040576|PMID:15073157) RGD PMID:15073157 MGI:MGI:3040576 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Ccm2l CCM2 like scaffold protein ISO MGI:MGI:1924696 (MGI:MGI:5437815|PMID:22898778) RGD PMID:22898778 MGI:MGI:5437815 NCBI chr 3:148,541,404...148,557,464
Ensembl chr 3:148,541,909...148,556,744
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 ISO MGI:MGI:2176467|MGI:MGI:4433295 (MGI:MGI:5694290|PMID:26102480) RGD PMID:26102480 MGI:MGI:5694290 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696
JBrowse link
G Dll4 delta like canonical Notch ligand 4 ISO (MGI:MGI:3056036|PMID:15466159) RGD PMID:15466159 MGI:MGI:3056036 NCBI chr 3:111,135,011...111,146,746
Ensembl chr 3:111,135,021...111,145,986
JBrowse link
G Eng endoglin ISO (MGI:MGI:4368063|PMID:19703439) RGD PMID:19703439 MGI:MGI:4368063 NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
JBrowse link
G Foxh1 forkhead box H1 ISO (MGI:MGI:3055632|PMID:15363409) RGD PMID:15363409 MGI:MGI:3055632 NCBI chr 7:117,730,307...117,733,076
Ensembl chr 7:117,730,307...117,732,387
JBrowse link
G Heg1 heart development protein with EGF-like domains 1 ISO MGI:MGI:2385159 (MGI:MGI:5437815|PMID:22898778) RGD PMID:22898778 MGI:MGI:5437815 NCBI chr11:70,234,248...70,322,966
Ensembl chr11:70,236,888...70,322,690
JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 ISO MGI:MGI:1341884 (MGI:MGI:3530185|PMID:15680351) RGD PMID:15680351 MGI:MGI:3530185 NCBI chr 2:95,320,147...95,322,701
Ensembl chr 2:95,320,283...95,322,696
JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 ISO MGI:MGI:1341800 (MGI:MGI:3530185|PMID:15680351) RGD PMID:15680351 MGI:MGI:3530185 NCBI chr 1:29,191,170...29,201,257
Ensembl chr 1:29,191,192...29,201,531
JBrowse link
G Med1 mediator complex subunit 1 ISO (MGI:MGI:2158098|PMID:11724781) RGD PMID:11724781 MGI:MGI:2158098 NCBI chr10:86,101,560...86,145,271
Ensembl chr10:86,103,600...86,144,880
JBrowse link
G Nkx2-5 NK2 homeobox 5 ISO
IEA
MGI:MGI:3042511 (MGI:MGI:3040116|PMID:15109497)
GO_REF:0000107
RGD
Ensembl
PMID:15109497 GO_REF:0000107, MGI:MGI:3040116 NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764
JBrowse link
G Notch1 notch receptor 1 ISO (MGI:MGI:3701380|PMID:17336907) RGD PMID:17336907 MGI:MGI:3701380 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Nrg1 neuregulin 1 ISO
IEA
(PMID:17336907)
GO_REF:0000107
RGD
Ensembl
PMID:17336907 GO_REF:0000107 NCBI chr16:62,969,573...64,065,063
Ensembl chr16:63,837,216...64,057,434
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region ISO (MGI:MGI:3701380|PMID:17336907) RGD PMID:17336907 MGI:MGI:3701380 NCBI chr14:59,657,738...59,865,427
Ensembl chr14:59,658,935...59,735,450
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO (MGI:MGI:894212|PMID:9217007) RGD PMID:9217007 MGI:MGI:894212 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 ISO (MGI:MGI:3820811|PMID:18718461) RGD PMID:18718461 MGI:MGI:3820811 NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
JBrowse link
G Ube4b ubiquitination factor E4B ISO MGI:MGI:3611069 (MGI:MGI:3610695|PMID:16314518) RGD PMID:16314518 MGI:MGI:3610695 NCBI chr 5:166,156,033...166,259,069
Ensembl chr 5:166,156,033...166,259,069
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure morphogenesis 2877
        trabecula morphogenesis 54
          bone trabecula morphogenesis + 15
          heart trabecula morphogenesis + 37
          trabecula formation + 27
Path 2
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure development 6269
        anatomical structure morphogenesis 2877
          trabecula morphogenesis 54
            bone trabecula morphogenesis + 15
            heart trabecula morphogenesis + 37
            trabecula formation + 27
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.