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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of transcription from RNA polymerase II promoter in response to hypoxia
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Accession:GO:0061418 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hypoxia stimulus.


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regulation of transcription from RNA polymerase II promoter in response to hypoxia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ARNT aryl hydrocarbon receptor nuclear translocator JBrowse link 1 150,809,713 150,876,737 RGD:2290271
G BACH1 BTB domain and CNC homolog 1 JBrowse link 21 29,298,922 29,361,896 RGD:2290271
G CA9 carbonic anhydrase 9 JBrowse link 9 35,673,809 35,681,159 RGD:2290271
G CREBBP CREB binding protein JBrowse link 16 3,725,054 3,880,727 RGD:2290271
G CUL2 cullin 2 JBrowse link 10 35,008,551 35,126,899 RGD:2290271
G EGLN1 egl-9 family hypoxia inducible factor 1 JBrowse link 1 231,363,751 231,425,044 RGD:2290271
G EGLN2 egl-9 family hypoxia inducible factor 2 JBrowse link 19 40,799,191 40,808,434 RGD:2290271
G EGLN3 egl-9 family hypoxia inducible factor 3 JBrowse link 14 33,924,227 33,951,074 RGD:2290271
G EGR1 early growth response 1 JBrowse link 5 138,465,479 138,469,303 RGD:2290271
G ELOB elongin B JBrowse link 16 2,771,414 2,777,280 RGD:2290271
G ELOC elongin C JBrowse link 8 73,945,119 73,972,287 RGD:2290271
G EP300 E1A binding protein p300 JBrowse link 22 41,092,592 41,180,077 RGD:2290271
G EPAS1 endothelial PAS domain protein 1 JBrowse link 2 46,297,407 46,386,697 RGD:2290271
G EPO erythropoietin JBrowse link 7 100,720,468 100,723,700 RGD:2290271
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 14 61,695,513 61,748,259 RGD:2290271
G HIF1AN hypoxia inducible factor 1 subunit alpha inhibitor JBrowse link 10 100,535,921 100,559,998 RGD:2290271
G HIF3A hypoxia inducible factor 3 subunit alpha JBrowse link 19 46,297,042 46,343,433 RGD:2290271
G HIGD1A HIG1 hypoxia inducible domain family member 1A JBrowse link 3 42,782,908 42,804,535 RGD:2290271
G LIMD1 LIM domains containing 1 JBrowse link 3 45,594,105 45,686,341 RGD:2290271
G PSMA1 proteasome 20S subunit alpha 1 JBrowse link 11 14,504,876 14,643,634 RGD:2290271
G PSMA2 proteasome 20S subunit alpha 2 JBrowse link 7 42,916,861 42,932,174 RGD:2290271
G PSMA3 proteasome 20S subunit alpha 3 JBrowse link 14 58,244,805 58,272,009 RGD:2290271
G PSMA4 proteasome 20S subunit alpha 4 JBrowse link 15 78,540,405 78,552,417 RGD:2290271
G PSMA5 proteasome 20S subunit alpha 5 JBrowse link 1 109,399,042 109,426,448 RGD:2290271
G PSMA6 proteasome 20S subunit alpha 6 JBrowse link 14 35,278,558 35,317,493 RGD:2290271
G PSMA7 proteasome 20S subunit alpha 7 JBrowse link 20 62,136,733 62,143,394 RGD:2290271
G PSMA8 proteasome 20S subunit alpha 8 JBrowse link 18 26,133,869 26,193,355 RGD:2290271
G PSMB1 proteasome 20S subunit beta 1 JBrowse link 6 170,535,120 170,553,307 RGD:2290271
G PSMB10 proteasome 20S subunit beta 10 JBrowse link 16 67,934,506 67,936,850 RGD:2290271
G PSMB11 proteasome subunit beta 11 JBrowse link 14 23,042,212 23,044,060 RGD:2290271
G PSMB2 proteasome 20S subunit beta 2 JBrowse link 1 35,599,541 35,641,526 RGD:2290271
G PSMB3 proteasome 20S subunit beta 3 JBrowse link 17 38,752,741 38,764,225 RGD:2290271
G PSMB4 proteasome 20S subunit beta 4 JBrowse link 1 151,399,573 151,401,937 RGD:2290271
G PSMB5 proteasome 20S subunit beta 5 JBrowse link 14 23,025,851 23,035,220 RGD:2290271
G PSMB6 proteasome 20S subunit beta 6 JBrowse link 17 4,796,144 4,798,503 RGD:2290271
G PSMB7 proteasome 20S subunit beta 7 JBrowse link 9 124,353,465 124,415,442 RGD:2290271
G PSMB8 proteasome 20S subunit beta 8 JBrowse link 6 32,840,717 32,844,679 RGD:2290271
G PSMB9 proteasome 20S subunit beta 9 JBrowse link 6 32,854,192 32,859,851 RGD:2290271
G PSMC1 proteasome 26S subunit, ATPase 1 JBrowse link 14 90,256,553 90,275,429 RGD:2290271
G PSMC2 proteasome 26S subunit, ATPase 2 JBrowse link 7 103,344,405 103,369,395 RGD:2290271
G PSMC3 proteasome 26S subunit, ATPase 3 JBrowse link 11 47,418,769 47,426,473 RGD:2290271
G PSMC4 proteasome 26S subunit, ATPase 4 JBrowse link 19 39,971,005 39,981,764 RGD:2290271
G PSMC5 proteasome 26S subunit, ATPase 5 JBrowse link 17 63,827,431 63,832,027 RGD:2290271
G PSMC6 proteasome 26S subunit, ATPase 6 JBrowse link 14 52,707,163 52,728,590 RGD:2290271
G PSMD1 proteasome 26S subunit, non-ATPase 1 JBrowse link 2 231,056,864 231,172,827 RGD:2290271
G PSMD10 proteasome 26S subunit, non-ATPase 10 JBrowse link X 108,084,205 108,091,644 RGD:2290271
G PSMD11 proteasome 26S subunit, non-ATPase 11 JBrowse link 17 32,444,510 32,483,319 RGD:2290271
G PSMD12 proteasome 26S subunit, non-ATPase 12 JBrowse link 17 67,337,916 67,366,598 RGD:2290271
G PSMD13 proteasome 26S subunit, non-ATPase 13 JBrowse link 11 236,972 252,984 RGD:2290271
G PSMD14 proteasome 26S subunit, non-ATPase 14 JBrowse link 2 161,308,425 161,411,717 RGD:2290271
G PSMD2 proteasome 26S subunit, non-ATPase 2 JBrowse link 3 184,299,241 184,309,050 RGD:2290271
G PSMD3 proteasome 26S subunit, non-ATPase 3 JBrowse link 17 39,980,807 39,997,959 RGD:2290271
G PSMD4 proteasome 26S subunit, non-ATPase 4 JBrowse link 1 151,254,734 151,267,479 RGD:2290271
G PSMD5 proteasome 26S subunit, non-ATPase 5 JBrowse link 9 120,816,053 120,842,922 RGD:2290271
G PSMD6 proteasome 26S subunit, non-ATPase 6 JBrowse link 3 64,010,549 64,024,010 RGD:2290271
G PSMD7 proteasome 26S subunit, non-ATPase 7 JBrowse link 16 74,296,814 74,306,288 RGD:2290271
G PSMD8 proteasome 26S subunit, non-ATPase 8 JBrowse link 19 38,374,550 38,383,824 RGD:2290271
G PSMD9 proteasome 26S subunit, non-ATPase 9 JBrowse link 12 121,888,790 121,918,297 RGD:2290271
G PSME1 proteasome activator subunit 1 JBrowse link 14 24,136,158 24,138,967 RGD:2290271
G PSME2 proteasome activator subunit 2 JBrowse link 14 24,143,365 24,146,646 RGD:2290271
G PSME3 proteasome activator subunit 3 JBrowse link 17 42,833,397 42,843,760 RGD:2290271
G PSME4 proteasome activator subunit 4 JBrowse link 2 53,864,069 53,970,993 RGD:2290271
G PSMF1 proteasome inhibitor subunit 1 JBrowse link 20 1,113,229 1,172,246 RGD:2290271
G RBX1 ring-box 1 JBrowse link 22 40,951,378 40,973,309 RGD:2290271
G RPS27A ribosomal protein S27a JBrowse link 2 55,231,903 55,235,853 RGD:2290271
G SEM1 SEM1 26S proteasome complex subunit JBrowse link 7 96,481,626 96,709,891 RGD:2290271
G STOX1 storkhead box 1 JBrowse link 10 68,827,531 68,895,942 RGD:2290271
G UBA52 ubiquitin A-52 residue ribosomal protein fusion product 1 JBrowse link 19 18,563,766 18,577,550 RGD:2290271
G UBB ubiquitin B JBrowse link 17 16,380,793 16,382,745 RGD:2290271
G UBC ubiquitin C JBrowse link 12 124,911,646 124,914,650 RGD:2290271
G VEGFA vascular endothelial growth factor A JBrowse link 6 43,770,209 43,786,487 RGD:2290271
G VHL von Hippel-Lindau tumor suppressor JBrowse link 3 10,141,778 10,153,667 RGD:2290271
negative regulation of transcription from RNA polymerase II promoter in response to hypoxia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 JBrowse link 6 139,371,807 139,374,648 RGD:2290271
G HIF1AN hypoxia inducible factor 1 subunit alpha inhibitor JBrowse link 10 100,535,921 100,559,998 RGD:2290271
G SIRT2 sirtuin 2 JBrowse link 19 38,878,555 38,899,862 RGD:2290271
G VHL von Hippel-Lindau tumor suppressor JBrowse link 3 10,141,778 10,153,667 RGD:2290271
positive regulation of transcription from RNA polymerase II promoter in response to hypoxia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 14 61,695,513 61,748,259 RGD:2290271
G NFE2L2 nuclear factor, erythroid 2 like 2 JBrowse link 2 177,230,303 177,265,131 RGD:2290271
G NOTCH1 notch receptor 1 JBrowse link 9 136,494,433 136,546,048 RGD:2290271
G RBPJ recombination signal binding protein for immunoglobulin kappa J region JBrowse link 4 26,163,458 26,435,131 RGD:2290271
G TP53 tumor protein p53 JBrowse link 17 7,668,402 7,687,550 RGD:2290271
G VEGFA vascular endothelial growth factor A JBrowse link 6 43,770,209 43,786,487 RGD:2290271

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17988
    response to stimulus 9471
      response to stress 4173
        response to hypoxia 355
          cellular response to hypoxia 202
            regulation of transcription from RNA polymerase II promoter in response to hypoxia 78
              negative regulation of transcription from RNA polymerase II promoter in response to hypoxia 4
              positive regulation of transcription from RNA polymerase II promoter in response to hypoxia 6
Path 2
Term Annotations click to browse term
  biological_process 17988
    metabolic process 11592
      cellular metabolic process 10880
        cellular aromatic compound metabolic process 6013
          nucleobase-containing compound metabolic process 5790
            nucleic acid metabolic process 5255
              RNA metabolic process 4756
                regulation of RNA metabolic process 3892
                  regulation of RNA biosynthetic process 3630
                    regulation of nucleic acid-templated transcription 3625
                      regulation of transcription, DNA-templated 3554
                        regulation of DNA-templated transcription in response to stress 129
                          regulation of transcription from RNA polymerase II promoter in response to stress 123
                            regulation of transcription from RNA polymerase II promoter in response to hypoxia 78
                              negative regulation of transcription from RNA polymerase II promoter in response to hypoxia 4
                              positive regulation of transcription from RNA polymerase II promoter in response to hypoxia 6
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.