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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of transcription from RNA polymerase II promoter in response to hypoxia
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Accession:GO:0061418 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hypoxia stimulus.


show annotations for term's descendants           Sort by:
 
regulation of transcription from RNA polymerase II promoter in response to hypoxia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bach1 BTB domain and CNC homolog 1 ISO (PMID:12511571) RGD PMID:12511571 NCBI chr11:27,364,913...27,398,713
Ensembl chr11:27,364,916...27,398,842
JBrowse link
G Egr1 early growth response 1 ISO
IEA
(MGI:MGI:3847400|PMID:18323529)
GO_REF:0000107
RGD
Ensembl
PMID:18323529 GO_REF:0000107, MGI:MGI:3847400 NCBI chr18:27,657,903...27,660,101
Ensembl chr18:27,657,628...27,661,429
JBrowse link
G Stox1 storkhead box 1 ISO (PMID:24738702) RGD PMID:24738702 NCBI chr20:32,276,857...32,353,677
Ensembl chr20:32,276,658...32,353,677
JBrowse link
negative regulation of transcription from RNA polymerase II promoter in response to hypoxia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO (PMID:22735262) RGD PMID:22735262 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Hif1an hypoxia inducible factor 1 subunit alpha inhibitor ISO
IBA
(PMID:11641274)
PMID:21873635
RGD PMID:11641274, PMID:21873635 RGD:13792537 NCBI chr 1:264,309,214...264,319,269
Ensembl chr 1:264,309,214...264,319,267
JBrowse link
G Sirt2 sirtuin 2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:24681946)
Ensembl
UniProt
RGD
PMID:24681946 GO_REF:0000024, GO_REF:0000107 NCBI chr 1:86,948,866...86,971,954
Ensembl chr 1:86,948,918...86,971,952
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor ISO (PMID:11641274) RGD PMID:11641274 NCBI chr 4:145,580,869...145,587,835
Ensembl chr 4:145,580,799...145,587,845
JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to hypoxia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hif1a hypoxia inducible factor 1 subunit alpha IEA
ISO
ISS
GO_REF:0000107
(PMID:19652095), (PMID:22735262), (PMID:24681946)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:19652095, PMID:22735262, PMID:24681946 GO_REF:0000024, GO_REF:0000107 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Nfe2l2 nuclear factor, erythroid 2-like 2 ISO (PMID:24844779) RGD PMID:24844779 NCBI chr 3:62,497,568...62,525,146
Ensembl chr 3:62,497,571...62,524,996
JBrowse link
G Notch1 notch receptor 1 ISO
ISS
(MGI:MGI:5319604|PMID:18299578)
GO_REF:0000024
RGD
UniProt
PMID:18299578 GO_REF:0000024, MGI:MGI:5319604 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region ISO (PMID:23303788) RGD PMID:23303788 NCBI chr14:59,657,738...59,865,427
Ensembl chr14:59,658,935...59,735,450
JBrowse link
G Tp53 tumor protein p53 ISO (MGI:MGI:4867601|PMID:20935145) RGD PMID:20935145 MGI:MGI:4867601 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
G Vegfa vascular endothelial growth factor A ISO (PMID:19652095) RGD PMID:19652095 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20017
    response to stimulus 10569
      response to stress 4060
        response to hypoxia 436
          cellular response to hypoxia 182
            regulation of transcription from RNA polymerase II promoter in response to hypoxia 13
              negative regulation of transcription from RNA polymerase II promoter in response to hypoxia 4
              positive regulation of transcription from RNA polymerase II promoter in response to hypoxia 6
Path 2
Term Annotations click to browse term
  biological_process 20017
    metabolic process 12256
      cellular metabolic process 11064
        cellular aromatic compound metabolic process 5708
          nucleobase-containing compound metabolic process 5483
            nucleic acid metabolic process 4980
              RNA metabolic process 4470
                regulation of RNA metabolic process 3616
                  regulation of RNA biosynthetic process 3343
                    regulation of nucleic acid-templated transcription 3338
                      regulation of transcription, DNA-templated 3289
                        regulation of DNA-templated transcription in response to stress 55
                          regulation of transcription from RNA polymerase II promoter in response to stress 51
                            regulation of transcription from RNA polymerase II promoter in response to hypoxia 13
                              negative regulation of transcription from RNA polymerase II promoter in response to hypoxia 4
                              positive regulation of transcription from RNA polymerase II promoter in response to hypoxia 6
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.