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ONTOLOGY REPORT - ANNOTATIONS


Term:trophoblast cell migration
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Accession:GO:0061450 term browser browse the term
Definition:Trophoblast cell migration that is accomplished by extension and retraction of a pseudopodium. Trophoblast cells line the outside of the blastocyst.


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trophoblast cell migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Itgb4 integrin subunit beta 4 ISO MGI:4331862 (MGI:5052233|PMID:21606200) RGD PMID:21606200 MGI:5052233 NCBI chr10:104,524,000...104,560,180
Ensembl chr10:104,523,996...104,561,078
JBrowse link
negative regulation of trophoblast cell migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1c activin A receptor type 1C ISO
IEA
(PMID:21356369)
GO_REF:0000107
RGD
Ensembl
PMID:21356369 GO_REF:0000107 NCBI chr 3:44,272,859...44,342,501
Ensembl chr 3:44,270,653...44,342,355
JBrowse link
G Arhgdib Rho GDP dissociation inhibitor beta ISO (PMID:24554735) RGD PMID:24554735 NCBI chr 4:170,913,920...170,932,789
Ensembl chr 4:170,913,923...170,932,618
JBrowse link
G Calr calreticulin ISO (PMID:22377355) RGD PMID:22377355 NCBI chr19:25,956,771...25,961,666
Ensembl chr19:25,956,771...25,961,666
JBrowse link
G Gja1 gap junction protein, alpha 1 ISO (PMID:30599359) RGD PMID:30599359 NCBI chr20:37,876,650...37,889,097
Ensembl chr20:37,876,650...37,889,089
JBrowse link
G Nodal nodal growth differentiation factor ISO (PMID:21356369) RGD PMID:21356369 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 ISO (PMID:21356369) RGD PMID:21356369 NCBI chr  X:1,364,771...1,369,451
Ensembl chr  X:1,364,786...1,369,384
JBrowse link
positive regulation of trophoblast cell migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1b activin A receptor type 1B ISO (PMID:21356369) RGD PMID:21356369 NCBI chr 7:142,817,174...142,858,365
Ensembl chr 7:142,817,157...142,860,572
JBrowse link
G Ago2 argonaute RISC catalytic component 2 IEA
ISO
GO_REF:0000107
(PMID:27208409)
Ensembl
RGD
PMID:27208409 GO_REF:0000107 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G C1qbp complement C1q binding protein ISO
ISS
(PMID:20810993)
GO_REF:0000024
RGD
UniProt
PMID:20810993 GO_REF:0000024 NCBI chr10:57,613,876...57,618,527
Ensembl chr10:57,613,879...57,618,527
JBrowse link
G LOC100912649 uncharacterized LOC100912649 ISS GO_REF:0000024 UniProt GO_REF:0000024
G Smurf2 SMAD specific E3 ubiquitin protein ligase 2 ISO (PMID:19255252) RGD PMID:19255252 NCBI chr10:95,018,050...95,118,107
Ensembl chr10:95,018,059...95,062,987
JBrowse link
G Syde1 synapse defective Rho GTPase homolog 1 ISO (PMID:27917469) RGD PMID:27917469 NCBI chr 7:14,037,646...14,043,632
Ensembl chr 7:14,037,620...14,043,779
JBrowse link
G Vegfa vascular endothelial growth factor A ISO (PMID:23083510) RGD PMID:23083510 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
regulation of trophoblast cell migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mmp12 matrix metallopeptidase 12 IMP RGD PMID:27807143 RGD:12910498 NCBI chr 8:5,594,717...5,616,494
Ensembl chr 8:5,606,592...5,616,493
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    reproductive process 1798
      trophoblast cell migration 15
        negative regulation of trophoblast cell migration 6
        positive regulation of trophoblast cell migration 7
        regulation of trophoblast cell migration + 14
Path 2
Term Annotations click to browse term
  biological_process 20020
    cellular process 18792
      movement of cell or subcellular component 2201
        cell motility 1760
          cell migration 1583
            ameboidal-type cell migration 452
              trophoblast cell migration 15
                negative regulation of trophoblast cell migration 6
                positive regulation of trophoblast cell migration 7
                regulation of trophoblast cell migration + 14
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.