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ONTOLOGY REPORT - ANNOTATIONS


Term:CENP-A containing chromatin organization
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Accession:GO:0061641 term browser browse the term
Definition:Any process that results in the specification, formation or maintenance of the physical structure of CENP-A containing chromatin.
Synonyms:related_synonym: centromeric chromatin organization


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CENP-A containing nucleosome assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPA centromere protein A TAS Reactome Reactome:R-HSA-606279 NCBI chr 2:26,786,056...26,794,589
Ensembl chr 2:26,764,289...26,801,067
JBrowse link
G CENPC centromere protein C TAS Reactome Reactome:R-HSA-606279 NCBI chr 4:67,468,762...67,545,503
Ensembl chr 4:67,468,762...67,545,503
JBrowse link
G CENPH centromere protein H TAS Reactome Reactome:R-HSA-606279 NCBI chr 5:69,189,583...69,210,357
Ensembl chr 5:69,189,574...69,210,357
JBrowse link
G CENPI centromere protein I TAS Reactome Reactome:R-HSA-606279 NCBI chr  X:101,098,159...101,181,847
Ensembl chr  X:101,098,218...101,163,681
JBrowse link
G CENPK centromere protein K TAS Reactome Reactome:R-HSA-606279 NCBI chr 5:65,488,919...65,563,194
Ensembl chr 5:65,517,766...65,563,168
JBrowse link
G CENPL centromere protein L TAS Reactome Reactome:R-HSA-606279 NCBI chr 1:173,799,550...173,824,639
Ensembl chr 1:173,799,550...173,824,720
JBrowse link
G CENPM centromere protein M TAS Reactome Reactome:R-HSA-606279 NCBI chr22:41,927,747...41,947,152
Ensembl chr22:41,938,737...41,947,152
JBrowse link
G CENPN centromere protein N TAS Reactome Reactome:R-HSA-606279 NCBI chr16:81,007,214...81,033,107
Ensembl chr16:81,006,498...81,033,114
JBrowse link
G CENPO centromere protein O TAS Reactome Reactome:R-HSA-606279 NCBI chr 2:24,793,339...24,822,376
Ensembl chr 2:24,793,136...24,822,376
JBrowse link
G CENPP centromere protein P IEA
TAS
InterPro
Reactome
GO_REF:0000002, Reactome:R-HSA-606279 NCBI chr 9:92,325,457...92,620,529
Ensembl chr 9:92,325,953...92,620,529
JBrowse link
G CENPQ centromere protein Q TAS Reactome Reactome:R-HSA-606279 NCBI chr 6:49,463,327...49,493,107
Ensembl chr 6:49,463,370...49,493,107
JBrowse link
G CENPS centromere protein S TAS Reactome Reactome:R-HSA-606279 NCBI chr 1:10,430,433...10,442,808
Ensembl chr 1:10,430,433...10,442,808
JBrowse link
G CENPS-CORT CENPS-CORT readthrough TAS Reactome Reactome:R-HSA-606279 NCBI chr 1:10,430,433...10,452,153
Ensembl chr 1:10,430,102...10,452,153
JBrowse link
G CENPT centromere protein T TAS Reactome Reactome:R-HSA-606279 NCBI chr16:67,828,157...67,847,693
Ensembl chr16:67,828,157...67,847,811
JBrowse link
G CENPU centromere protein U TAS Reactome Reactome:R-HSA-606279 NCBI chr 4:184,694,085...184,734,096
Ensembl chr 4:184,694,085...184,734,130
JBrowse link
G CENPW centromere protein W TAS (PMID:19533040) UniProtKB PMID:19533040 Reactome:R-HSA-606279 NCBI chr 6:126,339,696...126,483,320
Ensembl chr 6:126,340,115...126,348,875
Ensembl chr 6:126,340,115...126,348,875
JBrowse link
G CENPX centromere protein X TAS Reactome Reactome:R-HSA-606279 NCBI chr17:82,018,703...82,022,930
Ensembl chr17:82,018,702...82,024,107
JBrowse link
G H4-16 H4 histone 16 TAS Reactome Reactome:R-HSA-606279 NCBI chr12:14,770,720...14,771,131
Ensembl chr12:14,767,999...14,771,131
JBrowse link
G H4C1 H4 clustered histone 1 TAS Reactome Reactome:R-HSA-606279 NCBI chr 6:26,021,649...26,022,050
Ensembl chr 6:26,021,679...26,021,990
Ensembl chr 6:26,021,679...26,021,990
JBrowse link
G H4C11 H4 clustered histone 11 TAS Reactome Reactome:R-HSA-606279 NCBI chr 6:27,824,092...27,824,480
Ensembl chr 6:27,824,108...27,824,480
Ensembl chr 6:27,824,108...27,824,480
JBrowse link
G H4C12 H4 clustered histone 12 TAS Reactome Reactome:R-HSA-606279 NCBI chr 6:27,831,174...27,831,560
Ensembl chr 6:27,831,216...27,831,527
Ensembl chr 6:27,831,216...27,831,527
JBrowse link
G H4C13 H4 clustered histone 13 TAS Reactome Reactome:R-HSA-606279 NCBI chr 6:27,873,148...27,873,534
Ensembl chr 6:27,873,199...27,873,510
Ensembl chr 6:27,873,199...27,873,510
JBrowse link
G H4C14 H4 clustered histone 14 TAS Reactome Reactome:R-HSA-606279 NCBI chr 1:149,832,657...149,833,052
Ensembl chr 1:149,832,659...149,839,767
JBrowse link
G H4C15 H4 clustered histone 15 TAS Reactome Reactome:R-HSA-606279 NCBI chr 1:149,853,262...149,861,159
Ensembl chr 1:149,854,045...149,861,210
JBrowse link
G H4C2 H4 clustered histone 2 TAS Reactome Reactome:R-HSA-606279 NCBI chr 6:26,026,896...26,027,283
Ensembl chr 6:26,026,815...26,027,252
JBrowse link
G H4C3 H4 clustered histone 3 TAS Reactome Reactome:R-HSA-606279 NCBI chr 6:26,103,933...26,104,337
Ensembl chr 6:26,103,876...26,104,310
Ensembl chr 6:26,103,876...26,104,310
JBrowse link
G H4C4 H4 clustered histone 4 TAS Reactome Reactome:R-HSA-606279 NCBI chr 6:26,188,710...26,189,112
Ensembl chr 6:26,188,765...26,189,076
Ensembl chr 6:26,188,765...26,189,076
JBrowse link
G H4C5 H4 clustered histone 5 TAS Reactome Reactome:R-HSA-606279 NCBI chr 6:26,204,610...26,205,021
Ensembl chr 6:26,204,552...26,206,038
JBrowse link
G H4C6 H4 clustered histone 6 TAS Reactome Reactome:R-HSA-606279 NCBI chr 6:26,240,393...26,240,793
Ensembl chr 6:26,240,426...26,240,737
Ensembl chr 6:26,240,426...26,240,737
JBrowse link
G H4C8 H4 clustered histone 8 TAS Reactome Reactome:R-HSA-606279 NCBI chr 6:26,285,126...26,285,534
Ensembl chr 6:26,277,609...26,285,638
JBrowse link
G H4C9 H4 clustered histone 9 TAS Reactome Reactome:R-HSA-606279 NCBI chr 6:27,139,282...27,139,678
Ensembl chr 6:27,138,588...27,139,881
JBrowse link
G HJURP Holliday junction recognition protein TAS
IMP
(PMID:19410544), (PMID:19410545) Reactome
UniProtKB
PMID:19410544, PMID:19410545 Reactome:R-HSA-606279 NCBI chr 2:233,836,702...233,854,535
Ensembl chr 2:233,833,416...233,854,566
JBrowse link
G ITGB3BP integrin subunit beta 3 binding protein TAS Reactome Reactome:R-HSA-606279 NCBI chr 1:63,440,770...63,529,395
Ensembl chr 1:63,440,770...63,593,721
JBrowse link
G KNL1 kinetochore scaffold 1 TAS Reactome Reactome:R-HSA-606279 NCBI chr15:40,594,012...40,664,342
Ensembl chr15:40,594,020...40,664,342
JBrowse link
G MIS18A MIS18 kinetochore protein A TAS
IBA
(PMID:21873635) Reactome
GO_Central
PMID:21873635 Reactome:R-HSA-606279 NCBI chr21:32,154,682...32,283,954
Ensembl chr21:32,268,228...32,279,049
JBrowse link
G MIS18BP1 MIS18 binding protein 1 TAS Reactome Reactome:R-HSA-606279 NCBI chr14:45,203,190...45,257,190
Ensembl chr14:45,203,190...45,253,540
JBrowse link
G NASP nuclear autoantigenic sperm protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:45,584,041...45,618,893
Ensembl chr 1:45,583,846...45,618,904
JBrowse link
G NPM1 nucleophosmin 1 TAS Reactome Reactome:R-HSA-606279 NCBI chr 5:171,387,116...171,410,900
Ensembl chr 5:171,387,116...171,411,137
JBrowse link
G OIP5 Opa interacting protein 5 TAS
IBA
(PMID:21873635) Reactome
GO_Central
PMID:21873635 Reactome:R-HSA-606279 NCBI chr15:41,309,273...41,332,591
Ensembl chr15:41,309,273...41,332,591
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor TAS Reactome Reactome:R-HSA-606279 NCBI chr 1:32,651,208...32,686,211
Ensembl chr 1:32,651,142...32,686,211
JBrowse link
G RBBP7 RB binding protein 7, chromatin remodeling factor TAS Reactome Reactome:R-HSA-606279 NCBI chr  X:16,844,341...16,870,362
Ensembl chr  X:16,839,283...16,870,414
Ensembl chr  X:16,839,283...16,870,414
JBrowse link
G RSF1 remodeling and spacing factor 1 TAS Reactome Reactome:R-HSA-606279 NCBI chr11:77,660,009...77,872,232
Ensembl chr11:77,659,996...77,821,017
JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 TAS Reactome Reactome:R-HSA-606279 NCBI chr 3:128,064,611...128,153,914
Ensembl chr 3:128,064,778...128,153,914
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 TAS Reactome Reactome:R-HSA-606279 NCBI chr 4:143,513,501...143,557,486
Ensembl chr 4:143,513,702...143,557,486
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18670
    cellular process 17686
      cellular component organization or biogenesis 7146
        cellular component organization 6956
          chromatin organization 881
            CENP-A containing chromatin organization 44
              CENP-A containing nucleosome assembly + 44
Path 2
Term Annotations click to browse term
  biological_process 18670
    cellular process 17686
      cellular component organization or biogenesis 7146
        cellular component organization 6956
          organelle organization 4354
            chromosome organization 1337
              chromatin organization 881
                CENP-A containing chromatin organization 44
                  CENP-A containing nucleosome assembly + 44
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.