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ONTOLOGY REPORT - ANNOTATIONS


Term:process utilizing autophagic mechanism
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Accession:GO:0061919 term browser browse the term
Definition:A cellular process involving delivery of a portion of the cytoplasm to lysosomes or to the plant or fungal vacuole that does not involve direct transport through the endocytic or vacuolar protein sorting (Vps) pathways. This process typically leads to degradation of the cargo; however, it can also be used to deliver resident proteins, such as in the cytoplasm-to-vacuole targeting (Cvt) pathway.


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aggrephagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACBD5 acyl-CoA binding domain containing 5 JBrowse link 10 27,292,094 27,351,332 RGD:9068941
G ATG5 autophagy related 5 JBrowse link 6 103,997,824 104,140,931 RGD:9068941
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma JBrowse link 1 217,558,010 217,562,485 RGD:9068941
G SQSTM1 sequestosome 1 JBrowse link 5 174,960,727 174,989,946 RGD:9068941
G UBQLN1 ubiquilin 1 JBrowse link 9 41,170,416 41,218,656 RGD:9068941
G WDFY3 WD repeat and FYVE domain containing 3 JBrowse link 4 39,215,474 39,511,870 RGD:9068941
G WDR81 WD repeat domain 81 JBrowse link 17 1,708,119 1,722,405 RGD:9068941
autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 11 46,355,026 46,556,091 RGD:9068941
G ATG101 autophagy related 101 JBrowse link 12 36,685,897 36,693,613 RGD:9068941
G ATG12 autophagy related 12 JBrowse link 5 111,184,617 111,196,038 RGD:9068941
G ATG13 autophagy related 13 JBrowse link 11 46,567,728 46,623,609 RGD:9068941
G ATG14 autophagy related 14 JBrowse link 14 35,953,228 35,998,650 RGD:9068941
G ATG16L2 autophagy related 16 like 2 JBrowse link 11 67,893,365 67,921,794 RGD:9068941
G ATG2A autophagy related 2A JBrowse link 11 60,251,169 60,273,831 RGD:9068941
G ATG3 autophagy related 3 JBrowse link 3 109,681,163 109,710,835 RGD:9068941
G ATG4B autophagy related 4B cysteine peptidase JBrowse link 2B 128,913,323 128,950,112 RGD:9068941
G ATG5 autophagy related 5 JBrowse link 6 103,997,824 104,140,931 RGD:9068941
G ATG7 autophagy related 7 JBrowse link 3 11,208,600 11,488,757 RGD:9068941
G ATG9A autophagy related 9A JBrowse link 2B 106,477,007 106,487,249 RGD:9068941
G ATG9B autophagy related 9B JBrowse link 7 142,600,894 142,614,336 RGD:9068941
G BAG3 BAG cochaperone 3 JBrowse link 10 116,221,747 116,248,692 RGD:9068941
G BECN1 beclin 1 JBrowse link 17 14,493,619 14,507,809 RGD:9068941
G CTSD cathepsin D JBrowse link 11 1,789,326 1,800,524 RGD:9068941
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 1 111,490,488 111,583,703 RGD:9068941
G EMC6 ER membrane protein complex subunit 6 JBrowse link 17 3,719,010 3,719,950 RGD:9068941
G EPM2A EPM2A glucan phosphatase, laforin JBrowse link 6 143,179,097 143,525,223 RGD:9068941
G IRGM immunity related GTPase M JBrowse link 5 146,274,097 146,329,979 RGD:9068941
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 20 30,887,345 30,888,986 RGD:9068941
G PACS2 phosphofurin acidic cluster sorting protein 2 JBrowse link 14 85,935,807 86,035,935 RGD:9068941
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 18 35,203,896 35,336,512 RGD:9068941
G PSEN1 presenilin 1 JBrowse link 14 53,718,299 53,802,684 RGD:9068941
G RAB1A RAB1A, member RAS oncogene family JBrowse link 2A 65,149,922 65,193,305 RGD:9068941
G RAB23 RAB23, member RAS oncogene family JBrowse link 6 56,744,948 56,780,187 RGD:9068941
G RAB33B RAB33B, member RAS oncogene family JBrowse link 4 131,815,088 131,838,957 RGD:9068941
G RAB7A RAB7A, member RAS oncogene family JBrowse link 3 125,784,604 125,873,051 RGD:9068941
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 8 49,046,830 49,138,795 RGD:9068941
G RUFY4 RUN and FYVE domain containing 4 JBrowse link 2B 105,331,522 105,353,934 RGD:9068941
G STING1 stimulator of interferon response cGAMP interactor 1 JBrowse link 5 134,845,689 134,852,938 RGD:9068941
G STX12 syntaxin 12 JBrowse link 1 27,035,807 27,086,825 RGD:9068941
G SYNPO2 synaptopodin 2 JBrowse link 4 111,045,007 111,280,880 RGD:9068941
G TMEM41B transmembrane protein 41B JBrowse link 11 9,410,997 9,445,831 RGD:9068941
G TP53INP2 tumor protein p53 inducible nuclear protein 2 JBrowse link 20 31,033,855 31,042,976 RGD:9068941
G UBQLN1 ubiquilin 1 JBrowse link 9 41,170,416 41,218,656 RGD:9068941
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 12 129,549,399 129,579,087 RGD:9068941
G VMP1 vacuole membrane protein 1 JBrowse link 17 53,773,215 53,907,992 RGD:9068941
G WDR45 WD repeat domain 45 JBrowse link X 41,372,722 41,400,441 RGD:9068941
G WDR45B WD repeat domain 45B JBrowse link 17 77,028,543 77,058,075 RGD:9068941
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 17 62,357,952 62,394,620 RGD:9068941
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 7 5,446,621 5,488,170 RGD:9068941
autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin RGD:9068941
G EPG5 ectopic P-granules autophagy protein 5 homolog JBrowse link 18 39,129,678 39,250,418 RGD:9068941
G LAMP2 lysosomal associated membrane protein 2 JBrowse link X 109,700,185 109,743,579 RGD:9068941
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 20 30,887,345 30,888,986 RGD:9068941
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 16 68,063,869 68,076,772 RGD:9068941
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma JBrowse link 1 217,558,010 217,562,485 RGD:9068941
G MCOLN1 mucolipin 1 JBrowse link 19 6,813,498 6,825,153 RGD:9068941
G MFSD8 major facilitator superfamily domain containing 8 JBrowse link 4 120,087,477 120,137,550 RGD:9068941
G RUBCNL rubicon like autophagy enhancer JBrowse link 13 26,595,101 26,689,663 RGD:9068941
G SNAP29 synaptosome associated protein 29 JBrowse link 22 3,082,622 3,115,325 RGD:9068941
G SNAPIN SNAP associated protein JBrowse link 1 129,014,668 129,018,428 RGD:9068941
G SNX14 sorting nexin 14 JBrowse link 6 83,389,608 83,477,859 RGD:9068941
G STX17 syntaxin 17 JBrowse link 9 70,989,913 71,058,374 RGD:9068941
G TECPR1 tectonin beta-propeller repeat containing 1 JBrowse link 7 6,269,935 6,306,941 RGD:9068941
G UBQLN1 ubiquilin 1 JBrowse link 9 41,170,416 41,218,656 RGD:9068941
G UVRAG UV radiation resistance associated JBrowse link 11 70,870,341 71,197,559 RGD:9068941
G VAMP7 vesicle associated membrane protein 7 JBrowse link X 145,362,432 145,425,097 RGD:9068941
G VAMP8 vesicle associated membrane protein 8 JBrowse link 2A 85,627,678 85,632,205 RGD:9068941
G VCP valosin containing protein JBrowse link 9 34,907,147 34,923,227 RGD:9068941
G VIPAS39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog JBrowse link 14 57,982,041 58,013,037 RGD:9068941
G VPS16 VPS16 core subunit of CORVET and HOPS complexes JBrowse link 20 2,931,553 2,956,604 RGD:9068941
G VPS33A VPS33A core subunit of CORVET and HOPS complexes JBrowse link 12 119,831,693 119,868,132 RGD:9068941
G VPS33B VPS33B late endosome and lysosome associated JBrowse link 15 69,691,717 69,715,617 RGD:9068941
G VTI1B vesicle transport through interaction with t-SNAREs 1B JBrowse link 14 48,227,203 48,254,990 RGD:9068941
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 7 5,446,621 5,488,170 RGD:9068941
autophagosome membrane docking term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG14 autophagy related 14 JBrowse link 14 35,953,228 35,998,650 RGD:9068941
G SNAP29 synaptosome associated protein 29 JBrowse link 22 3,082,622 3,115,325 RGD:9068941
G STX17 syntaxin 17 JBrowse link 9 70,989,913 71,058,374 RGD:9068941
G VAMP8 vesicle associated membrane protein 8 JBrowse link 2A 85,627,678 85,632,205 RGD:9068941
autophagosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 1 15,929,613 15,955,631 RGD:9068941
G PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha JBrowse link 11 17,143,024 17,263,920 RGD:9068941
G PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta JBrowse link 1 180,024,889 180,096,287 RGD:9068941
autophagosome-endosome fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RUBCNL rubicon like autophagy enhancer JBrowse link 13 26,595,101 26,689,663 RGD:9068941
autophagosome-lysosome fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 1 15,929,613 15,955,631 RGD:9068941
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin RGD:9068941
G RUBCNL rubicon like autophagy enhancer JBrowse link 13 26,595,101 26,689,663 RGD:9068941
autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 11 46,355,026 46,556,091 RGD:9068941
G ANXA7 annexin A7 JBrowse link 10 69,923,353 69,962,980 RGD:9068941
G ARSA arylsulfatase A JBrowse link 22 30,868,812 30,871,970 RGD:9068941
G ARSB arylsulfatase B JBrowse link 5 36,325,581 36,534,371 RGD:9068941
G ATG10 autophagy related 10 JBrowse link 5 33,029,074 33,315,496 RGD:9068941
G ATG12 autophagy related 12 JBrowse link 5 111,184,617 111,196,038 RGD:9068941
G ATG14 autophagy related 14 JBrowse link 14 35,953,228 35,998,650 RGD:9068941
G ATG16L2 autophagy related 16 like 2 JBrowse link 11 67,893,365 67,921,794 RGD:9068941
G ATG3 autophagy related 3 JBrowse link 3 109,681,163 109,710,835 RGD:9068941
G ATG4B autophagy related 4B cysteine peptidase JBrowse link 2B 128,913,323 128,950,112 RGD:9068941
G ATG5 autophagy related 5 JBrowse link 6 103,997,824 104,140,931 RGD:9068941
G ATG7 autophagy related 7 JBrowse link 3 11,208,600 11,488,757 RGD:9068941
G ATG9A autophagy related 9A JBrowse link 2B 106,477,007 106,487,249 RGD:9068941
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 1 15,929,613 15,955,631 RGD:9068941
G BECN1 beclin 1 JBrowse link 17 14,493,619 14,507,809 RGD:9068941
G BECN2 beclin 2 JBrowse link 1 217,520,628 217,522,177 RGD:9068941
G C19H19orf12 chromosome 19 C19orf12 homolog JBrowse link 19 26,626,994 26,643,372 RGD:9068941
G C9orf72 C9orf72-SMCR8 complex subunit JBrowse link 9 27,395,054 27,422,282 RGD:9068941
G CHMP4B charged multivesicular body protein 4B JBrowse link 20 30,098,796 30,146,347 RGD:9068941
G CTSB cathepsin B JBrowse link 8 7,333,498 7,359,264 RGD:9068941
G DRD2 dopamine receptor D2 JBrowse link 11 108,289,838 108,357,174 RGD:9068941
G DRD3 dopamine receptor D3 JBrowse link 3 111,265,834 111,317,176 RGD:9068941
G EI24 EI24 autophagy associated transmembrane protein JBrowse link 11 120,389,136 120,404,347 RGD:9068941
G EPG5 ectopic P-granules autophagy protein 5 homolog JBrowse link 18 39,129,678 39,250,418 RGD:9068941
G EPM2A EPM2A glucan phosphatase, laforin JBrowse link 6 143,179,097 143,525,223 RGD:9068941
G ITGB4 integrin subunit beta 4 JBrowse link 17 69,671,252 69,708,520 RGD:9068941
G LAMP2 lysosomal associated membrane protein 2 JBrowse link X 109,700,185 109,743,579 RGD:9068941
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 20 30,887,345 30,888,986 RGD:9068941
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 16 68,063,869 68,076,772 RGD:9068941
G NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1 JBrowse link 6 17,969,146 17,970,962 RGD:9068941
G NPC1 NPC intracellular cholesterol transporter 1 JBrowse link 18 16,783,096 16,838,301 RGD:9068941
G NRBF2 nuclear receptor binding factor 2 JBrowse link 10 59,640,101 59,662,071 RGD:9068941
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 18 35,203,896 35,336,512 RGD:9068941
G PMP22 peripheral myelin protein 22 JBrowse link 17 36,389,549 36,425,161 RGD:9068941
G PSEN1 presenilin 1 JBrowse link 14 53,718,299 53,802,684 RGD:9068941
G RAB1A RAB1A, member RAS oncogene family JBrowse link 2A 65,149,922 65,193,305 RGD:9068941
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 8 49,046,830 49,138,795 RGD:9068941
G S100A8 S100 calcium binding protein A8 JBrowse link 1 128,741,378 128,742,520 RGD:9068941
G S100A9 S100 calcium binding protein A9 JBrowse link 1 128,709,175 128,712,461 RGD:9068941
G SQSTM1 sequestosome 1 JBrowse link 5 174,960,727 174,989,946 RGD:9068941
G SRPX sushi repeat containing protein X-linked JBrowse link X 30,598,574 30,670,464 RGD:9068941
G SYT11 synaptotagmin 11 JBrowse link 1 131,193,999 131,218,752 RGD:9068941
G TBC1D5 TBC1 domain family member 5 JBrowse link 3 17,080,589 17,664,776 RGD:9068941
G TECPR1 tectonin beta-propeller repeat containing 1 JBrowse link 7 6,269,935 6,306,941 RGD:9068941
G TP53 tumor protein p53 JBrowse link 17 7,699,449 7,717,812 RGD:9068941
G TRAPPC4 trafficking protein particle complex 4 JBrowse link 11 113,856,661 113,861,855 RGD:9068941
G TRIM17 tripartite motif containing 17 JBrowse link 1 203,808,933 203,818,936 RGD:9068941
G TRIM5 tripartite motif containing 5 JBrowse link 11 5,798,336 5,819,876 RGD:9068941
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 12 129,549,399 129,579,087 RGD:9068941
G ULK2 unc-51 like autophagy activating kinase 2 JBrowse link 17 31,262,168 31,362,251 RGD:9068941
G UMOD uromodulin JBrowse link 16 17,960,456 17,980,338 RGD:9068941
G UVRAG UV radiation resistance associated JBrowse link 11 70,870,341 71,197,559 RGD:9068941
G VCP valosin containing protein JBrowse link 9 34,907,147 34,923,227 RGD:9068941
G VMP1 vacuole membrane protein 1 JBrowse link 17 53,773,215 53,907,992 RGD:9068941
G VPS13A vacuolar protein sorting 13 homolog A JBrowse link 9 47,424,921 47,668,150 RGD:9068941
G VPS39 VPS39 subunit of HOPS complex JBrowse link 15 21,113,047 21,162,738 RGD:9068941
G VPS51 VPS51 subunit of GARP complex JBrowse link 11 60,452,483 60,474,049 RGD:9068941
G VTI1A vesicle transport through interaction with t-SNAREs 1A JBrowse link 10 109,037,834 109,539,019 RGD:9068941
G WDR45 WD repeat domain 45 JBrowse link X 41,372,722 41,400,441 RGD:9068941
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 17 62,357,952 62,394,620 RGD:9068941
autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 11 46,355,026 46,556,091 RGD:9068941
G ATG5 autophagy related 5 JBrowse link 6 103,997,824 104,140,931 RGD:9068941
G ATG7 autophagy related 7 JBrowse link 3 11,208,600 11,488,757 RGD:9068941
G BECN1 beclin 1 JBrowse link 17 14,493,619 14,507,809 RGD:9068941
G CAPN10 calpain 10 JBrowse link 2B 127,838,477 127,851,334 RGD:9068941
G CDKN2A cyclin dependent kinase inhibitor 2A JBrowse link 9 21,803,862 21,831,322 RGD:9068941
G CISD2 CDGSH iron sulfur domain 2 JBrowse link 4 95,251,920 95,313,404 RGD:9068941
G CTSK cathepsin K JBrowse link 1 126,146,555 126,158,662 RGD:9068941
G FBXO7 F-box protein 7 JBrowse link 22 13,481,255 13,505,301 RGD:9068941
G FIS1 fission, mitochondrial 1 JBrowse link 7 93,381,058 93,386,483 RGD:9068941
G FUNDC1 FUN14 domain containing 1 JBrowse link X 36,970,051 36,989,276 RGD:9068941
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 20 30,887,345 30,888,986 RGD:9068941
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 16 68,063,869 68,076,772 RGD:9068941
G PINK1 PTEN induced kinase 1 JBrowse link 1 19,583,330 19,601,248 RGD:9068941
G PPARGC1A PPARG coactivator 1 alpha JBrowse link 4 18,196,431 18,876,889 RGD:9068941
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 6 159,293,016 160,679,106 RGD:9068941
G SLC25A46 solute carrier family 25 member 46 JBrowse link 5 106,106,112 106,132,355 RGD:9068941
G USP30 ubiquitin specific peptidase 30 JBrowse link 12 106,629,106 106,664,512 RGD:9068941
autophagy of peroxisome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACBD5 acyl-CoA binding domain containing 5 JBrowse link 10 27,292,094 27,351,332 RGD:9068941
chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG5 autophagy related 5 JBrowse link 6 103,997,824 104,140,931 RGD:9068941
G ATG7 autophagy related 7 JBrowse link 3 11,208,600 11,488,757 RGD:9068941
G BAG3 BAG cochaperone 3 JBrowse link 10 116,221,747 116,248,692 RGD:9068941
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 11 117,890,545 117,895,262 RGD:9068941
G LAMP2 lysosomal associated membrane protein 2 JBrowse link X 109,700,185 109,743,579 RGD:9068941
G STUB1 STIP1 homology and U-box containing protein 1 RGD:9068941
G SYNPO2 synaptopodin 2 JBrowse link 4 111,045,007 111,280,880 RGD:9068941
chaperone-mediated protein transport involved in chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 11 117,890,545 117,895,262 RGD:9068941
engulfment of target by autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 7 90,995,923 91,112,240 RGD:9068941
glycophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G STBD1 starch binding domain 1 JBrowse link 4 47,889,830 47,894,943 RGD:9068941
induction by virus of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 JBrowse link 15 18,871,867 18,973,380 RGD:9068941
G PHB2 prohibitin 2 JBrowse link 12 7,097,073 7,102,474 RGD:9068941
late endosomal microautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 11 117,890,545 117,895,262 RGD:9068941
G VPS4A vacuolar protein sorting 4 homolog A JBrowse link 16 49,685,827 49,699,542 RGD:9068941
G VPS4B vacuolar protein sorting 4 homolog B JBrowse link 18 56,749,439 56,782,660 RGD:9068941
lipophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AUP1 AUP1 lipid droplet regulating VLDL assembly factor JBrowse link 2A 74,593,260 74,596,372 RGD:9068941
G RAB7A RAB7A, member RAS oncogene family JBrowse link 3 125,784,604 125,873,051 RGD:9068941
macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACBD5 acyl-CoA binding domain containing 5 JBrowse link 10 27,292,094 27,351,332 RGD:9068941
G ATG14 autophagy related 14 JBrowse link 14 35,953,228 35,998,650 RGD:9068941
G ATG3 autophagy related 3 JBrowse link 3 109,681,163 109,710,835 RGD:9068941
G ATG5 autophagy related 5 JBrowse link 6 103,997,824 104,140,931 RGD:9068941
G ATG7 autophagy related 7 JBrowse link 3 11,208,600 11,488,757 RGD:9068941
G BECN1 beclin 1 JBrowse link 17 14,493,619 14,507,809 RGD:9068941
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin RGD:9068941
G HDAC10 histone deacetylase 10 JBrowse link 22 30,473,753 30,481,369 RGD:9068941
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 20 30,887,345 30,888,986 RGD:9068941
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 16 68,063,869 68,076,772 RGD:9068941
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma JBrowse link 1 217,558,010 217,562,485 RGD:9068941
G NBR1 NBR1 autophagy cargo receptor JBrowse link 17 14,119,638 14,197,827 RGD:9068941
G PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha JBrowse link 11 17,143,024 17,263,920 RGD:9068941
G PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta JBrowse link 1 180,024,889 180,096,287 RGD:9068941
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 18 35,203,896 35,336,512 RGD:9068941
G PLAA phospholipase A2 activating protein JBrowse link 9 26,749,607 26,793,580 RGD:9068941
G SQSTM1 sequestosome 1 JBrowse link 5 174,960,727 174,989,946 RGD:9068941
G TBC1D5 TBC1 domain family member 5 JBrowse link 3 17,080,589 17,664,776 RGD:9068941
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 JBrowse link 11 63,120,913 63,132,831 RGD:9068941
G TMEM74 transmembrane protein 74 JBrowse link 8 105,432,869 105,441,542 RGD:9068941
G TP53INP2 tumor protein p53 inducible nuclear protein 2 JBrowse link 20 31,033,855 31,042,976 RGD:9068941
G UBQLN1 ubiquilin 1 JBrowse link 9 41,170,416 41,218,656 RGD:9068941
G UBXN6 UBX domain protein 6 JBrowse link 19 3,463,259 3,475,428 RGD:9068941
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 12 129,549,399 129,579,087 RGD:9068941
G VCP valosin containing protein JBrowse link 9 34,907,147 34,923,227 RGD:9068941
G YOD1 YOD1 deubiquitinase JBrowse link 1 182,646,727 182,655,141 RGD:9068941
G ZFYVE1 zinc finger FYVE-type containing 1 JBrowse link 14 53,550,688 53,608,297 RGD:9068941
mitophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 11 46,355,026 46,556,091 RGD:9068941
G ATG13 autophagy related 13 JBrowse link 11 46,567,728 46,623,609 RGD:9068941
G ATG14 autophagy related 14 JBrowse link 14 35,953,228 35,998,650 RGD:9068941
G BECN1 beclin 1 JBrowse link 17 14,493,619 14,507,809 RGD:9068941
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 16 68,063,869 68,076,772 RGD:9068941
G PHB2 prohibitin 2 JBrowse link 12 7,097,073 7,102,474 RGD:9068941
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 6 159,293,016 160,679,106 RGD:9068941
G SQSTM1 sequestosome 1 JBrowse link 5 174,960,727 174,989,946 RGD:9068941
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 12 129,549,399 129,579,087 RGD:9068941
mitophagy by induced vacuole formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SPATA18 spermatogenesis associated 18 JBrowse link 4 71,863,549 71,911,079 RGD:9068941
negative regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BECN1 beclin 1 JBrowse link 17 14,493,619 14,507,809 RGD:9068941
G CHMP4A charged multivesicular body protein 4A JBrowse link 14 4,985,642 4,989,985 RGD:9068941
G CHMP4B charged multivesicular body protein 4B JBrowse link 20 30,098,796 30,146,347 RGD:9068941
G EHMT2 euchromatic histone lysine methyltransferase 2 JBrowse link 6 31,542,946 31,560,894 RGD:9068941
G FEZ1 fasciculation and elongation protein zeta 1 JBrowse link 11 120,272,187 120,322,600 RGD:9068941
G FEZ2 fasciculation and elongation protein zeta 2 JBrowse link 2A 36,581,436 36,628,054 RGD:9068941
G LRRK2 leucine rich repeat kinase 2 JBrowse link 12 48,343,621 48,488,337 RGD:9068941
G MTM1 myotubularin 1 JBrowse link X 140,218,742 140,323,495 RGD:9068941
G NUPR1 nuclear protein 1, transcriptional regulator RGD:9068941
G PHF23 PHD finger protein 23 JBrowse link 17 7,264,944 7,269,549 RGD:9068941
G PINK1 PTEN induced kinase 1 JBrowse link 1 19,583,330 19,601,248 RGD:9068941
G SCFD1 sec1 family domain containing 1 JBrowse link 14 11,401,378 11,508,418 RGD:9068941
G SEC22B SEC22 homolog B, vesicle trafficking protein JBrowse link 1 82,383,313 82,404,612 RGD:9068941
G SMCR8 SMCR8-C9orf72 complex subunit JBrowse link 17 32,858,205 32,871,132 RGD:9068941
G TMEM39A transmembrane protein 39A JBrowse link 3 116,549,308 116,586,260 RGD:9068941
negative regulation of autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLEC16A C-type lectin domain containing 16A JBrowse link 16 9,887,877 10,124,500 RGD:9068941
G PHF23 PHD finger protein 23 JBrowse link 17 7,264,944 7,269,549 RGD:9068941
G RUBCN rubicon autophagy regulator JBrowse link 3 195,088,936 195,166,771 RGD:9068941
G TMEM39A transmembrane protein 39A JBrowse link 3 116,549,308 116,586,260 RGD:9068941
G UBQLN4 ubiquilin 4 JBrowse link 1 131,374,635 131,395,986 RGD:9068941
negative regulation of autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADRA1A adrenoceptor alpha 1A JBrowse link 8 25,947,996 26,138,022 RGD:9068941
G AKT1 AKT serine/threonine kinase 1 JBrowse link 14 85,417,229 85,444,722 RGD:9068941
G BCL2 BCL2 apoptosis regulator JBrowse link 18 56,481,212 56,679,012 RGD:9068941
G BECN1 beclin 1 JBrowse link 17 14,493,619 14,507,809 RGD:9068941
G BMF Bcl2 modifying factor JBrowse link 15 19,026,053 19,047,008 RGD:9068941
G CPTP ceramide-1-phosphate transfer protein JBrowse link 1 81,942 86,035 RGD:9068941
G DAP death associated protein JBrowse link 5 10,991,599 11,078,154 RGD:9068941
G EIF4E eukaryotic translation initiation factor 4E JBrowse link 4 91,268,463 91,329,800 RGD:9068941
G EIF4G1 eukaryotic translation initiation factor 4 gamma 1 JBrowse link 3 181,351,938 181,372,776 RGD:9068941
G EIF4G2 eukaryotic translation initiation factor 4 gamma 2 JBrowse link 11 10,961,216 10,973,210 RGD:9068941
G EIF4G3 eukaryotic translation initiation factor 4 gamma 3 JBrowse link 1 19,755,217 20,123,490 RGD:9068941
G FOXK1 forkhead box K1 JBrowse link 7 4,934,773 5,017,127 RGD:9068941
G FOXK2 forkhead box K2 JBrowse link 17 76,930,135 77,018,294 RGD:9068941
G GATA4 GATA binding protein 4 JBrowse link 8 7,442,921 7,526,731 RGD:9068941
G GOLGA2 golgin A2 JBrowse link 9 99,376,847 99,397,128 RGD:9068941
G HERC1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 JBrowse link 15 42,555,131 42,785,228 RGD:9068941
G HTR2B 5-hydroxytryptamine receptor 2B JBrowse link 2B 118,362,719 118,381,253 RGD:9068941
G IL10 interleukin 10 JBrowse link 1 182,369,234 182,374,207 RGD:9068941
G IL10RA interleukin 10 receptor subunit alpha JBrowse link 11 112,820,445 112,835,603 RGD:9068941
G IL3 interleukin 3 JBrowse link 5 127,483,843 127,486,388 RGD:9068941
G KDM4A lysine demethylase 4A JBrowse link 1 42,949,977 43,005,684 RGD:9068941
G KIF25 kinesin family member 25 JBrowse link 6 165,924,346 166,005,061 RGD:9068941
G KLHL22 kelch like family member 22 RGD:9068941
G LEP leptin JBrowse link 7 120,230,896 120,248,602 RGD:9068941
G LEPR leptin receptor JBrowse link 1 64,772,612 64,881,886 RGD:9068941
G MCL1 MCL1 apoptosis regulator, BCL2 family member JBrowse link 1 125,918,760 125,923,952 RGD:9068941
G MT3 metallothionein 3 JBrowse link 16 36,875,919 36,877,558 RGD:9068941
G MTMR8 myotubularin related protein 8 JBrowse link X 53,388,164 53,515,593 RGD:9068941
G MTMR9 myotubularin related protein 9 JBrowse link 8 7,864,461 7,918,324 RGD:9068941
G MTOR mechanistic target of rapamycin kinase JBrowse link 1 9,871,700 10,028,704 RGD:9068941
G NAMPT nicotinamide phosphoribosyltransferase JBrowse link 7 98,227,071 98,262,254 RGD:9068941
G NUPR1 nuclear protein 1, transcriptional regulator RGD:9068941
G PTK2 protein tyrosine kinase 2 JBrowse link 8 137,330,777 137,677,306 RGD:9068941
G PTPN22 protein tyrosine phosphatase non-receptor type 22 JBrowse link 1 88,685,736 88,743,164 RGD:9068941
G RASIP1 Ras interacting protein 1 JBrowse link 19 45,720,179 45,740,131 RGD:9068941
G RNF5 ring finger protein 5 JBrowse link 6 31,825,799 31,828,188 RGD:9068941
G RRAGA Ras related GTP binding A JBrowse link 9 18,868,781 18,870,356 RGD:9068941
G RUBCN rubicon autophagy regulator JBrowse link 3 195,088,936 195,166,771 RGD:9068941
G SIRT2 sirtuin 2 JBrowse link 19 35,984,453 36,005,582 RGD:9068941
G STAT3 signal transducer and activator of transcription 3 JBrowse link 17 14,928,689 15,003,644 RGD:9068941
G TBC1D14 TBC1 domain family member 14 RGD:9068941
G TREM2 triggering receptor expressed on myeloid cells 2 JBrowse link 6 40,735,483 40,740,208 RGD:9068941
G WDR6 WD repeat domain 6 JBrowse link 3 48,931,669 48,940,591 RGD:9068941
G ZKSCAN3 zinc finger with KRAB and SCAN domains 3 JBrowse link 6 28,157,736 28,174,906 RGD:9068941
negative regulation of autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PINK1 PTEN induced kinase 1 JBrowse link 1 19,583,330 19,601,248 RGD:9068941
G TSPO translocator protein JBrowse link 22 24,034,918 24,046,370 RGD:9068941
negative regulation of chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTSA cathepsin A JBrowse link 20 42,229,064 42,237,627 RGD:9068941
G SNCA synuclein alpha JBrowse link 4 82,018,585 82,132,938 RGD:9068941
negative regulation of macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HMOX1 heme oxygenase 1 JBrowse link 22 16,388,368 16,401,289 RGD:9068941
G LRRK2 leucine rich repeat kinase 2 JBrowse link 12 48,343,621 48,488,337 RGD:9068941
G LZTS1 leucine zipper tumor suppressor 1 JBrowse link 8 19,471,361 19,529,437 RGD:9068941
G MTOR mechanistic target of rapamycin kinase JBrowse link 1 9,871,700 10,028,704 RGD:9068941
G NPC1 NPC intracellular cholesterol transporter 1 JBrowse link 18 16,783,096 16,838,301 RGD:9068941
G NRBP2 nuclear receptor binding protein 2 JBrowse link 8 140,588,105 140,595,499 RGD:9068941
G PINK1 PTEN induced kinase 1 JBrowse link 1 19,583,330 19,601,248 RGD:9068941
G POLDIP2 DNA polymerase delta interacting protein 2 JBrowse link 17 28,416,912 28,427,280 RGD:9068941
G QSOX1 quiescin sulfhydryl oxidase 1 JBrowse link 1 155,641,793 155,687,231 RGD:9068941
G SMCR8 SMCR8-C9orf72 complex subunit JBrowse link 17 32,858,205 32,871,132 RGD:9068941
G TSC1 TSC complex subunit 1 JBrowse link 9 104,007,708 104,060,938 RGD:9068941
G TSC2 TSC complex subunit 2 JBrowse link 16 615,776 655,411 RGD:9068941
G USP36 ubiquitin specific peptidase 36 JBrowse link 17 72,871,379 72,916,560 RGD:9068941
negative regulation of macroautophagy by TORC1 signaling term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLEC16A C-type lectin domain containing 16A JBrowse link 16 9,887,877 10,124,500 RGD:9068941
negative regulation of mitophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLEC16A C-type lectin domain containing 16A JBrowse link 16 9,887,877 10,124,500 RGD:9068941
G RNF41 ring finger protein 41 JBrowse link 12 32,693,349 32,710,866 RGD:9068941
G TIGAR TP53 induced glycolysis regulatory phosphatase JBrowse link 12 4,429,945 4,462,142 RGD:9068941
G TP53 tumor protein p53 JBrowse link 17 7,699,449 7,717,812 RGD:9068941
G USP30 ubiquitin specific peptidase 30 JBrowse link 12 106,629,106 106,664,512 RGD:9068941
negative regulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HTRA2 HtrA serine peptidase 2 JBrowse link 2A 74,596,020 74,599,790 RGD:9068941
negative regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G VPS13C vacuolar protein sorting 13 homolog C JBrowse link 15 40,819,512 41,020,644 RGD:9068941
parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HDAC6 histone deacetylase 6 JBrowse link X 41,099,539 41,122,650 RGD:9068941
G MFN2 mitofusin 2 JBrowse link 1 10,729,933 10,764,865 RGD:9068941
G OPTN optineurin JBrowse link 10 13,104,335 13,142,725 RGD:9068941
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 6 159,293,016 160,679,106 RGD:9068941
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 7 90,995,923 91,112,240 RGD:9068941
positive regulation by symbiont of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG5 autophagy related 5 JBrowse link 6 103,997,824 104,140,931 RGD:9068941
G ATG7 autophagy related 7 JBrowse link 3 11,208,600 11,488,757 RGD:9068941
G IRGM immunity related GTPase M JBrowse link 5 146,274,097 146,329,979 RGD:9068941
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 12 129,549,399 129,579,087 RGD:9068941
G ULK2 unc-51 like autophagy activating kinase 2 JBrowse link 17 31,262,168 31,362,251 RGD:9068941
positive regulation of aggrephagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BAG3 BAG cochaperone 3 JBrowse link 10 116,221,747 116,248,692 RGD:9068941
G HSPB8 heat shock protein family B (small) member 8 JBrowse link 12 116,758,785 116,774,883 RGD:9068941
G HTT huntingtin JBrowse link 4 3,215,081 3,388,587 RGD:9068941
positive regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BECN1 beclin 1 JBrowse link 17 14,493,619 14,507,809 RGD:9068941
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 1 111,490,488 111,583,703 RGD:9068941
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link 9 98,571,796 98,623,581 RGD:9068941
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha JBrowse link 10 22,691,355 22,870,628 RGD:9068941
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta JBrowse link 17 18,471,609 18,507,916 RGD:9068941
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma JBrowse link 12 31,323,346 31,335,626 RGD:9068941
G RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 JBrowse link 2B 24,692,363 24,810,685 RGD:9068941
G RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 JBrowse link 1 195,720,895 195,842,619 RGD:9068941
G RALB RAS like proto-oncogene B JBrowse link 2B 7,185,192 7,227,220 RGD:9068941
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 JBrowse link 1 119,224,304 119,267,986 RGD:9068941
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 12 129,549,399 129,579,087 RGD:9068941
positive regulation of autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADRB2 adrenoceptor beta 2 JBrowse link 5 144,259,756 144,398,421 RGD:9068941
G CALCOCO2 calcium binding and coiled-coil domain 2 JBrowse link 17 8,671,682 8,705,625 RGD:9068941
G CLEC16A C-type lectin domain containing 16A JBrowse link 16 9,887,877 10,124,500 RGD:9068941
G FYCO1 FYVE and coiled-coil domain autophagy adaptor 1 JBrowse link 3 45,825,670 45,903,595 RGD:9068941
G IRGM immunity related GTPase M JBrowse link 5 146,274,097 146,329,979 RGD:9068941
G SMCR8 SMCR8-C9orf72 complex subunit JBrowse link 17 32,858,205 32,871,132 RGD:9068941
positive regulation of autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AGER advanced glycosylation end-product specific receptor JBrowse link 6 31,828,363 31,831,981 RGD:9068941
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 11 46,355,026 46,556,091 RGD:9068941
G ATG16L1 autophagy related 16 like 1 JBrowse link 2B 120,479,534 120,523,563 RGD:9068941
G ATG7 autophagy related 7 JBrowse link 3 11,208,600 11,488,757 RGD:9068941
G BECN1 beclin 1 JBrowse link 17 14,493,619 14,507,809 RGD:9068941
G DAPK1 death associated protein kinase 1 JBrowse link 9 58,628,872 58,836,205 RGD:9068941
G DCN decorin JBrowse link 12 88,678,791 88,715,677 RGD:9068941
G DHRSX dehydrogenase/reductase X-linked RGD:9068941
G FLCN folliculin JBrowse link 17 34,057,127 34,081,637 RGD:9068941
G FOXO1 forkhead box O1 JBrowse link 13 21,763,729 21,874,279 RGD:9068941
G FOXO3 forkhead box O3 JBrowse link 6 106,360,519 106,485,676 RGD:9068941
G GSK3A glycogen synthase kinase 3 alpha JBrowse link 19 39,118,330 39,130,768 RGD:9068941
G GSK3B glycogen synthase kinase 3 beta JBrowse link 3 116,943,205 117,215,001 RGD:9068941
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 14 42,295,691 42,348,478 RGD:9068941
G HMGB1 high mobility group box 1 JBrowse link 13 11,737,942 11,894,923 RGD:9068941
G IFNG interferon gamma JBrowse link 12 65,663,764 65,668,732 RGD:9068941
G IRGM immunity related GTPase M JBrowse link 5 146,274,097 146,329,979 RGD:9068941
G KAT5 lysine acetyltransferase 5 JBrowse link 11 61,071,118 61,078,667 RGD:9068941
G LRRK2 leucine rich repeat kinase 2 JBrowse link 12 48,343,621 48,488,337 RGD:9068941
G MAP2K1 mitogen-activated protein kinase kinase 1 JBrowse link 15 45,337,117 45,438,826 RGD:9068941
G MEFV MEFV innate immuity regulator, pyrin JBrowse link 16 2,175,858 2,191,056 RGD:9068941
G MID2 midline 2 JBrowse link X 96,917,731 97,026,545 RGD:9068941
G MTDH metadherin JBrowse link 8 94,282,432 94,368,516 RGD:9068941
G OPTN optineurin JBrowse link 10 13,104,335 13,142,725 RGD:9068941
G ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 JBrowse link 17 17,361,624 17,368,194 RGD:9068941
G PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha JBrowse link 11 17,143,024 17,263,920 RGD:9068941
G PIM2 Pim-2 proto-oncogene, serine/threonine kinase JBrowse link X 41,210,494 41,216,552 RGD:9068941
G PLEKHF1 pleckstrin homology and FYVE domain containing 1 JBrowse link 19 26,593,833 26,604,514 RGD:9068941
G PLK2 polo like kinase 2 JBrowse link 5 55,543,828 55,550,116 RGD:9068941
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 5 69,581,748 69,620,721 RGD:9068941
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 1 55,928,577 55,998,628 RGD:9068941
G PRKD1 protein kinase D1 JBrowse link 14 10,353,284 10,707,841 RGD:9068941
G RNF152 ring finger protein 152 JBrowse link 18 55,180,955 55,264,164 RGD:9068941
G ROCK1 Rho associated coiled-coil containing protein kinase 1 JBrowse link 18 14,192,293 14,352,357 RGD:9068941
G SH3BP4 SH3 domain binding protein 4 JBrowse link 2B 122,179,431 122,284,430 RGD:9068941
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 JBrowse link 1 119,224,304 119,267,986 RGD:9068941
G STK11 serine/threonine kinase 11 RGD:9068941
G SVIP small VCP interacting protein JBrowse link 11 22,828,321 22,837,536 RGD:9068941
G TFEB transcription factor EB JBrowse link 6 41,268,169 41,320,822 RGD:9068941
G TICAM1 toll like receptor adaptor molecule 1 JBrowse link 19 3,836,100 3,852,017 RGD:9068941
G TMEM59 transmembrane protein 59 JBrowse link 1 53,305,154 53,326,975 RGD:9068941
G TP53INP1 tumor protein p53 inducible nuclear protein 1 JBrowse link 8 91,545,655 91,569,535 RGD:9068941
G TPCN1 two pore segment channel 1 JBrowse link 12 110,812,587 110,903,033 RGD:9068941
G TRIM21 tripartite motif containing 21 JBrowse link 11 4,588,083 4,596,942 RGD:9068941
G TRIM22 tripartite motif containing 22 JBrowse link 11 5,824,176 5,844,990 RGD:9068941
G TRIM65 tripartite motif containing 65 JBrowse link 17 69,830,734 69,846,276 RGD:9068941
G TRIM8 tripartite motif containing 8 JBrowse link 10 99,242,187 99,256,342 RGD:9068941
G TSC2 TSC complex subunit 2 JBrowse link 16 615,776 655,411 RGD:9068941
G UFL1 UFM1 specific ligase 1 JBrowse link 6 94,356,440 94,389,920 RGD:9068941
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 12 129,549,399 129,579,087 RGD:9068941
G XBP1 X-box binding protein 1 JBrowse link 22 9,863,479 9,869,491 RGD:9068941
G ZC3H12A zinc finger CCCH-type containing 12A JBrowse link 1 36,743,341 36,753,261 RGD:9068941
positive regulation of autophagy in response to ER overload term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCL2L11 BCL2 like 11 JBrowse link 2A 90,862,070 90,909,833 RGD:9068941
G BID BH3 interacting domain death agonist JBrowse link 22 1,164,787 1,205,051 RGD:9068941
G DDIT3 DNA damage inducible transcript 3 JBrowse link 12 31,406,332 31,410,293 RGD:9068941
positive regulation of autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BNIP3 BCL2 interacting protein 3 JBrowse link 10 128,671,663 128,685,952 RGD:9068941
G FBXO7 F-box protein 7 JBrowse link 22 13,481,255 13,505,301 RGD:9068941
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 14 42,295,691 42,348,478 RGD:9068941
G HTT huntingtin JBrowse link 4 3,215,081 3,388,587 RGD:9068941
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 6 159,293,016 160,679,106 RGD:9068941
positive regulation of autophagy of mitochondrion in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP5IF1 ATP synthase inhibitory factor subunit 1 JBrowse link 1 27,495,250 27,497,255 RGD:9068941
G HK2 hexokinase 2 JBrowse link 2A 74,897,914 74,957,234 RGD:9068941
G MUL1 mitochondrial E3 ubiquitin protein ligase 1 JBrowse link 1 19,454,792 19,463,527 RGD:9068941
G PINK1 PTEN induced kinase 1 JBrowse link 1 19,583,330 19,601,248 RGD:9068941
positive regulation of chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PLK3 polo like kinase 3 JBrowse link 1 44,104,564 44,110,162 RGD:9068941
positive regulation of lipophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADRB2 adrenoceptor beta 2 JBrowse link 5 144,259,756 144,398,421 RGD:9068941
G HTT huntingtin JBrowse link 4 3,215,081 3,388,587 RGD:9068941
G SESN2 sestrin 2 JBrowse link 1 27,518,248 27,541,264 RGD:9068941
G SPTLC1 serine palmitoyltransferase long chain base subunit 1 JBrowse link 9 63,087,798 63,174,977 RGD:9068941
G SPTLC2 serine palmitoyltransferase long chain base subunit 2 JBrowse link 14 58,066,123 58,170,472 RGD:9068941
positive regulation of macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BNIP3 BCL2 interacting protein 3 JBrowse link 10 128,671,663 128,685,952 RGD:9068941
G BNIP3L BCL2 interacting protein 3 like JBrowse link 8 25,661,629 25,685,878 RGD:9068941
G C9orf72 C9orf72-SMCR8 complex subunit JBrowse link 9 27,395,054 27,422,282 RGD:9068941
G DCN decorin JBrowse link 12 88,678,791 88,715,677 RGD:9068941
G EPM2A EPM2A glucan phosphatase, laforin JBrowse link 6 143,179,097 143,525,223 RGD:9068941
G GNAI3 G protein subunit alpha i3 JBrowse link 1 111,925,668 111,971,941 RGD:9068941
G GPSM1 G protein signaling modulator 1 JBrowse link 9 107,400,819 107,432,165 RGD:9068941
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 14 42,295,691 42,348,478 RGD:9068941
G HMOX1 heme oxygenase 1 JBrowse link 22 16,388,368 16,401,289 RGD:9068941
G IKBKG inhibitor of nuclear factor kappa B kinase regulatory subunit gamma JBrowse link X 143,988,720 144,010,078 RGD:9068941
G IL4 interleukin 4 JBrowse link 5 128,091,342 128,099,886 RGD:9068941
G KDR kinase insert domain receptor JBrowse link 4 68,813,894 68,861,018 RGD:9068941
G LACRT lacritin JBrowse link 12 34,112,452 34,116,737 RGD:9068941
G LARP1 La ribonucleoprotein 1, translational regulator JBrowse link 5 150,086,829 150,221,401 RGD:9068941
G MAP3K7 mitogen-activated protein kinase kinase kinase 7 JBrowse link 6 88,398,329 88,470,926 RGD:9068941
G PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 JBrowse link 11 111,978,368 112,005,064 RGD:9068941
G PIM2 Pim-2 proto-oncogene, serine/threonine kinase JBrowse link X 41,210,494 41,216,552 RGD:9068941
G PINK1 PTEN induced kinase 1 JBrowse link 1 19,583,330 19,601,248 RGD:9068941
G RAB12 RAB12, member RAS oncogene family JBrowse link 18 5,646,023 5,675,920 RGD:9068941
G RUFY4 RUN and FYVE domain containing 4 JBrowse link 2B 105,331,522 105,353,934 RGD:9068941
G SCOC short coiled-coil protein JBrowse link 4 132,740,601 132,749,658 RGD:9068941
G SESN2 sestrin 2 JBrowse link 1 27,518,248 27,541,264 RGD:9068941
G SIRT1 sirtuin 1 JBrowse link 10 64,368,878 64,401,684 RGD:9068941
G STING1 stimulator of interferon response cGAMP interactor 1 JBrowse link 5 134,845,689 134,852,938 RGD:9068941
G SUPT5H SPT5 homolog, DSIF elongation factor subunit JBrowse link 19 36,543,998 36,575,161 RGD:9068941
G TBK1 TANK binding kinase 1 JBrowse link 12 24,419,271 24,469,164 RGD:9068941
G TRIM13 tripartite motif containing 13 JBrowse link 13 31,137,236 31,153,398 RGD:9068941
G TSC1 TSC complex subunit 1 JBrowse link 9 104,007,708 104,060,938 RGD:9068941
G TSC2 TSC complex subunit 2 JBrowse link 16 615,776 655,411 RGD:9068941
G WAC WW domain containing adaptor with coiled-coil JBrowse link 10 28,685,294 28,777,176 RGD:9068941
positive regulation of mitophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 6 159,293,016 160,679,106 RGD:9068941
G VPS13D vacuolar protein sorting 13 homolog D JBrowse link 1 10,978,555 11,260,839 RGD:9068941
positive regulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDC37 cell division cycle 37, HSP90 cochaperone JBrowse link 19 9,942,644 9,955,112 RGD:9068941
G HDAC6 histone deacetylase 6 JBrowse link X 41,099,539 41,122,650 RGD:9068941
G HUWE1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 JBrowse link X 45,746,228 45,897,250 RGD:9068941
G PINK1 PTEN induced kinase 1 JBrowse link 1 19,583,330 19,601,248 RGD:9068941
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 6 159,293,016 160,679,106 RGD:9068941
G TOMM7 translocase of outer mitochondrial membrane 7 JBrowse link 7 23,501,438 23,511,321 RGD:9068941
positive regulation of xenophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link 9 98,571,796 98,623,581 RGD:9068941
G MAPK3 mitogen-activated protein kinase 3 RGD:9068941
G NOD1 nucleotide binding oligomerization domain containing 1 JBrowse link 7 31,060,245 31,109,012 RGD:9068941
G NOD2 nucleotide binding oligomerization domain containing 2 JBrowse link 16 30,955,976 30,995,451 RGD:9068941
G OPTN optineurin JBrowse link 10 13,104,335 13,142,725 RGD:9068941
G RIPK2 receptor interacting serine/threonine kinase 2 JBrowse link 8 86,447,216 86,480,511 RGD:9068941
G TBK1 TANK binding kinase 1 JBrowse link 12 24,419,271 24,469,164 RGD:9068941
G TLR2 toll like receptor 2 JBrowse link 4 146,024,653 146,091,388 RGD:9068941
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG16L1 autophagy related 16 like 1 JBrowse link 2B 120,479,534 120,523,563 RGD:9068941
G ATG5 autophagy related 5 JBrowse link 6 103,997,824 104,140,931 RGD:9068941
G IRGM immunity related GTPase M JBrowse link 5 146,274,097 146,329,979 RGD:9068941
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 7 5,446,621 5,488,170 RGD:9068941
protein localization to phagophore assembly site term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG16L1 autophagy related 16 like 1 JBrowse link 2B 120,479,534 120,523,563 RGD:9068941
G MFN2 mitofusin 2 JBrowse link 1 10,729,933 10,764,865 RGD:9068941
G PACS2 phosphofurin acidic cluster sorting protein 2 JBrowse link 14 85,935,807 86,035,935 RGD:9068941
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 18 35,203,896 35,336,512 RGD:9068941
G STX17 syntaxin 17 JBrowse link 9 70,989,913 71,058,374 RGD:9068941
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 7 5,446,621 5,488,170 RGD:9068941
protein targeting to lysosome involved in chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 11 117,890,545 117,895,262 RGD:9068941
G LAMP2 lysosomal associated membrane protein 2 JBrowse link X 109,700,185 109,743,579 RGD:9068941
protein targeting to vacuole involved in autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 7 90,995,923 91,112,240 RGD:9068941
regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C9orf72 C9orf72-SMCR8 complex subunit JBrowse link 9 27,395,054 27,422,282 RGD:9068941
G IFT20 intraflagellar transport 20 JBrowse link 17 28,438,960 28,446,113 RGD:9068941
G IFT88 intraflagellar transport 88 JBrowse link 13 1,893,102 2,017,771 RGD:9068941
G MTMR3 myotubularin related protein 3 JBrowse link 22 10,925,275 11,072,554 RGD:9068941
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing JBrowse link 2B 95,505,376 95,597,792 RGD:9068941
G RAB1B RAB1B, member RAS oncogene family JBrowse link 11 61,634,017 61,642,945 RGD:9068941
G RNF5 ring finger protein 5 JBrowse link 6 31,825,799 31,828,188 RGD:9068941
G TBC1D14 TBC1 domain family member 14 RGD:9068941
G UBQLN2 ubiquilin 2 JBrowse link X 48,829,844 48,835,040 RGD:9068941
regulation of autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin RGD:9068941
G TBC1D25 TBC1 domain family member 25 JBrowse link X 40,837,887 40,860,885 RGD:9068941
regulation of autophagosome size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 1 15,929,613 15,955,631 RGD:9068941
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin RGD:9068941
regulation of autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACER2 alkaline ceramidase 2 JBrowse link 9 19,216,891 19,262,477 RGD:9068941
G ATM ATM serine/threonine kinase JBrowse link 11 103,109,979 103,256,405 RGD:9068941
G BCL2 BCL2 apoptosis regulator JBrowse link 18 56,481,212 56,679,012 RGD:9068941
G BOK BCL2 family apoptosis regulator BOK JBrowse link 2B 128,832,458 128,847,918 RGD:9068941
G C9orf72 C9orf72-SMCR8 complex subunit JBrowse link 9 27,395,054 27,422,282 RGD:9068941
G CASP1 caspase 1 JBrowse link 11 99,965,964 99,975,640 RGD:9068941
G CHMP4B charged multivesicular body protein 4B JBrowse link 20 30,098,796 30,146,347 RGD:9068941
G CISD2 CDGSH iron sulfur domain 2 JBrowse link 4 95,251,920 95,313,404 RGD:9068941
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin RGD:9068941
G DDIT3 DNA damage inducible transcript 3 JBrowse link 12 31,406,332 31,410,293 RGD:9068941
G DEPP1 DEPP1 autophagy regulator JBrowse link 10 41,970,914 41,973,518 RGD:9068941
G DRAM1 DNA damage regulated autophagy modulator 1 JBrowse link 12 99,464,540 99,509,793 RGD:9068941
G DRAM2 DNA damage regulated autophagy modulator 2 JBrowse link 1 113,763,013 113,786,070 RGD:9068941
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit JBrowse link 16 12,848,334 12,880,480 RGD:9068941
G FBXL2 F-box and leucine rich repeat protein 2 JBrowse link 3 33,199,436 33,308,831 RGD:9068941
G GPR137B G protein-coupled receptor 137B JBrowse link 1 211,709,507 211,775,846 RGD:9068941
G IFI16 interferon gamma inducible protein 16 JBrowse link 1 134,364,706 134,405,910 RGD:9068941
G KAT8 lysine acetyltransferase 8 JBrowse link 16 23,837,540 23,851,376 RGD:9068941
G KEAP1 kelch like ECH associated protein 1 JBrowse link 19 10,037,544 10,055,091 RGD:9068941
G LAMP3 lysosomal associated membrane protein 3 JBrowse link 3 180,152,363 180,193,223 RGD:9068941
G LMX1B LIM homeobox transcription factor 1 beta JBrowse link 9 97,730,850 97,820,554 RGD:9068941
G LRRK2 leucine rich repeat kinase 2 JBrowse link 12 48,343,621 48,488,337 RGD:9068941
G MAPK15 mitogen-activated protein kinase 15 JBrowse link 8 140,468,365 140,474,604 RGD:9068941
G MAPT microtubule associated protein tau JBrowse link 17 11,373,220 11,506,669 RGD:9068941
G MFSD8 major facilitator superfamily domain containing 8 JBrowse link 4 120,087,477 120,137,550 RGD:9068941
G MTOR mechanistic target of rapamycin kinase JBrowse link 1 9,871,700 10,028,704 RGD:9068941
G NLRP6 NLR family pyrin domain containing 6 JBrowse link 11 274,904 281,590 RGD:9068941
G NUPR1 nuclear protein 1, transcriptional regulator RGD:9068941
G PIK3R2 phosphoinositide-3-kinase regulatory subunit 2 JBrowse link 19 17,632,265 17,649,664 RGD:9068941
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha JBrowse link 10 22,691,355 22,870,628 RGD:9068941
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta JBrowse link 17 18,471,609 18,507,916 RGD:9068941
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma JBrowse link 12 31,323,346 31,335,626 RGD:9068941
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 6 159,293,016 160,679,106 RGD:9068941
G PYCARD PYD and CARD domain containing JBrowse link 16 23,764,386 23,765,732 RGD:9068941
G RAB39B RAB39B, member RAS oncogene family JBrowse link X 144,728,535 144,734,893 RGD:9068941
G RAB8A RAB8A, member RAS oncogene family JBrowse link 19 15,598,029 15,619,988 RGD:9068941
G RMC1 regulator of MON1-CCZ1 JBrowse link 18 16,754,469 16,783,381 RGD:9068941
G SMCR8 SMCR8-C9orf72 complex subunit JBrowse link 17 32,858,205 32,871,132 RGD:9068941
G SOGA1 suppressor of glucose, autophagy associated 1 JBrowse link 20 33,108,735 33,194,788 RGD:9068941
G TPCN2 two pore segment channel 2 JBrowse link 11 64,139,512 64,227,913 RGD:9068941
G TRIB3 tribbles pseudokinase 3 JBrowse link 20 583,267 605,416 RGD:9068941
G USP10 ubiquitin specific peptidase 10 JBrowse link 16 65,367,463 65,447,549 RGD:9068941
G USP13 ubiquitin specific peptidase 13 JBrowse link 3 176,685,541 176,818,360 RGD:9068941
G USP33 ubiquitin specific peptidase 33 JBrowse link 1 76,914,795 76,980,639 RGD:9068941
G VPS29 VPS29 retromer complex component JBrowse link 12 108,061,372 108,071,994 RGD:9068941
G WDR24 WD repeat domain 24 RGD:9068941
G WDR41 WD repeat domain 41 JBrowse link 5 37,809,767 37,870,039 RGD:9068941
G XBP1 X-box binding protein 1 JBrowse link 22 9,863,479 9,869,491 RGD:9068941
G XPA XPA, DNA damage recognition and repair factor JBrowse link 9 68,726,723 68,788,049 RGD:9068941
G ZMPSTE24 zinc metallopeptidase STE24 JBrowse link 1 39,545,264 39,589,721 RGD:9068941
regulation of autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BNIP3L BCL2 interacting protein 3 like JBrowse link 8 25,661,629 25,685,878 RGD:9068941
G CSNK2A2 casein kinase 2 alpha 2 JBrowse link 16 38,426,399 38,466,575 RGD:9068941
G CTTN cortactin JBrowse link 11 65,500,074 65,539,158 RGD:9068941
G DNM1L dynamin 1 like JBrowse link 12 53,476,553 53,541,421 RGD:9068941
G FBXW7 F-box and WD repeat domain containing 7 JBrowse link 4 144,660,676 144,874,404 RGD:9068941
G FZD5 frizzled class receptor 5 JBrowse link 2B 95,003,246 95,010,577 RGD:9068941
G GSK3A glycogen synthase kinase 3 alpha JBrowse link 19 39,118,330 39,130,768 RGD:9068941
G PARL presenilin associated rhomboid like JBrowse link 3 180,862,434 180,921,197 RGD:9068941
G SREBF1 sterol regulatory element binding transcription factor 1 JBrowse link 17 33,458,196 33,484,643 RGD:9068941
G SREBF2 sterol regulatory element binding transcription factor 2 JBrowse link 22 22,725,790 22,799,749 RGD:9068941
G USP36 ubiquitin specific peptidase 36 JBrowse link 17 72,871,379 72,916,560 RGD:9068941
G VDAC1 voltage dependent anion channel 1 JBrowse link 5 129,375,267 129,408,230 RGD:9068941
regulation of chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GFAP glial fibrillary acidic protein JBrowse link 17 12,407,211 12,417,072 RGD:9068941
regulation of macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 1 15,929,613 15,955,631 RGD:9068941
G ATP6V0A1 ATPase H+ transporting V0 subunit a1 JBrowse link 17 14,793,717 14,857,706 RGD:9068941
G HDAC6 histone deacetylase 6 JBrowse link X 41,099,539 41,122,650 RGD:9068941
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 1 55,928,577 55,998,628 RGD:9068941
G UBQLN2 ubiquilin 2 JBrowse link X 48,829,844 48,835,040 RGD:9068941
reticulophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DDRGK1 DDRGK domain containing 1 JBrowse link 20 3,276,292 3,290,433 RGD:9068941
G RETREG1 reticulophagy regulator 1 JBrowse link 5 16,774,596 16,920,948 RGD:9068941
G STING1 stimulator of interferon response cGAMP interactor 1 JBrowse link 5 134,845,689 134,852,938 RGD:9068941
G UBA5 ubiquitin like modifier activating enzyme 5 JBrowse link 3 129,732,314 129,752,579 RGD:9068941
G UFC1 ubiquitin-fold modifier conjugating enzyme 1 JBrowse link 1 136,545,095 136,571,327 RGD:9068941
G UFL1 UFM1 specific ligase 1 JBrowse link 6 94,356,440 94,389,920 RGD:9068941
G UFM1 ubiquitin fold modifier 1 JBrowse link 13 19,571,114 19,584,259 RGD:9068941
selective autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SQSTM1 sequestosome 1 JBrowse link 5 174,960,727 174,989,946 RGD:9068941
substrate localization to autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 7 90,995,923 91,112,240 RGD:9068941
suppression by virus of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG7 autophagy related 7 JBrowse link 3 11,208,600 11,488,757 RGD:9068941
xenophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG16L1 autophagy related 16 like 1 JBrowse link 2B 120,479,534 120,523,563 RGD:9068941
G CALCOCO2 calcium binding and coiled-coil domain 2 JBrowse link 17 8,671,682 8,705,625 RGD:9068941
G LGALS8 galectin 8 JBrowse link 1 212,083,584 212,112,182 RGD:9068941
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 7 5,446,621 5,488,170 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12490
    cellular process 11598
      process utilizing autophagic mechanism 357
        autophagy + 357
        cytoplasm to vacuole transport by the Cvt pathway + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.