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ONTOLOGY REPORT - ANNOTATIONS


Term:process utilizing autophagic mechanism
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Accession:GO:0061919 term browser browse the term
Definition:A cellular process involving delivery of a portion of the cytoplasm to lysosomes or to the plant or fungal vacuole that does not involve direct transport through the endocytic or vacuolar protein sorting (Vps) pathways. This process typically leads to degradation of the cargo; however, it can also be used to deliver resident proteins, such as in the cytoplasm-to-vacuole targeting (Cvt) pathway.


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aggrephagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACBD5 acyl-CoA binding domain containing 5 JBrowse link 2 6,873,207 6,923,152 RGD:9068941
G ATG5 autophagy related 5 JBrowse link 12 63,565,859 63,692,383 RGD:13508589
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma JBrowse link 7 33,364,569 33,369,080 RGD:13508589
G SQSTM1 sequestosome 1 JBrowse link 11 1,859,776 1,869,289 RGD:13508589
G UBQLN1 ubiquilin 1 JBrowse link 1 75,767,345 75,812,278 RGD:13508589
G WDFY3 WD repeat and FYVE domain containing 3 JBrowse link 32 8,430,856 8,662,988 RGD:9068941
G WDR81 WD repeat domain 81 JBrowse link 9 45,860,200 45,875,439 RGD:13508589
autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 18 42,903,815 43,073,918 RGD:9068941
G ATG101 autophagy related 101 JBrowse link 27 2,931,595 2,934,914 RGD:13508589
G ATG12 autophagy related 12 JBrowse link 11 5,531,062 5,543,034 RGD:13508589
G ATG13 autophagy related 13 JBrowse link 18 42,834,538 42,886,873 RGD:13508589
G ATG14 autophagy related 14 JBrowse link 8 31,199,097 31,234,200 RGD:13508589
G ATG16L1 autophagy related 16 like 1 JBrowse link 25 44,761,034 44,800,033 RGD:13508589
G ATG16L2 autophagy related 16 like 2 JBrowse link 21 25,404,667 25,433,456 RGD:13508589
RGD:9068941
G ATG2A autophagy related 2A JBrowse link 18 52,258,070 52,277,953 RGD:13508589
G ATG2B autophagy related 2B JBrowse link 8 65,039,960 65,110,811 RGD:13508589
G ATG3 autophagy related 3 JBrowse link 33 17,046,951 17,073,203 RGD:13508589
G ATG4B autophagy related 4B cysteine peptidase JBrowse link 25 51,494,316 51,518,683 RGD:9068941
G ATG5 autophagy related 5 JBrowse link 12 63,565,859 63,692,383 RGD:13508589
G ATG7 autophagy related 7 JBrowse link 20 6,916,354 7,154,849 RGD:13508589
G ATG9A autophagy related 9A JBrowse link 37 25,768,287 25,777,529 RGD:13508589
G ATG9B autophagy related 9B JBrowse link 16 15,072,436 15,082,867 RGD:9068941
G BAG3 BAG cochaperone 3 JBrowse link 28 29,792,612 29,815,466 RGD:9068941
G BECN1 beclin 1 JBrowse link 9 20,204,203 20,215,081 RGD:9068941
G BECN2 beclin 2 JBrowse link 7 33,318,124 33,356,388 RGD:13508589
G CTSD cathepsin D JBrowse link 18 46,010,440 46,019,457 RGD:9068941
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 6 42,612,130 42,681,161 RGD:13508589
G EMC6 ER membrane protein complex subunit 6 JBrowse link 9 47,497,354 47,498,861 RGD:13508589
G EPM2A EPM2A glucan phosphatase, laforin JBrowse link 1 36,835,775 36,977,653 RGD:13508589
G GABARAP GABA type A receptor-associated protein JBrowse link 5 32,207,879 32,209,976 RGD:13508589
G GABARAPL1 GABA type A receptor associated protein like 1 JBrowse link 27 35,783,203 35,791,576 RGD:13508589
G GABARAPL2 GABA type A receptor associated protein like 2 JBrowse link 5 75,230,214 75,240,724 RGD:13508589
G LOC606863 immunity-related GTPase family M protein-like JBrowse link 11 506,981 523,338 RGD:9068941
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 24 23,672,343 23,673,937 RGD:13508589
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 5 65,669,553 65,683,445 RGD:13508589
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma JBrowse link 7 33,364,569 33,369,080 RGD:13508589
G NSFL1C NSFL1 cofactor JBrowse link 24 19,575,543 19,599,002 RGD:13508589
G PACS2 phosphofurin acidic cluster sorting protein 2 JBrowse link 8 72,672,861 72,721,655 RGD:9068941
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 7 48,663,381 48,800,350 RGD:13508589
G PSEN1 presenilin 1 JBrowse link 8 46,495,551 46,569,532 RGD:13508589
G RAB19 RAB19, member RAS oncogene family JBrowse link 16 8,544,353 8,562,714 RGD:13508589
G RAB1A RAB1A, member RAS oncogene family JBrowse link 10 64,564,351 64,590,654 RGD:13508589
G RAB1B RAB1B, member RAS oncogene family JBrowse link 18 51,026,975 51,034,356 RGD:13508589
G RAB23 RAB23, member RAS oncogene family JBrowse link 12 24,388,530 24,438,956 RGD:13508589
G RAB33B RAB33B, member RAS oncogene family JBrowse link 19 3,256,790 3,273,198 RGD:13508589
G RAB43 RAB43, member RAS oncogene family JBrowse link 20 2,979,094 3,020,496 RGD:13508589
G RAB7A RAB7A, member RAS oncogene family JBrowse link 20 2,704,716 2,776,518 RGD:9068941
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 29 4,445,668 4,544,223 RGD:13508589
G RUFY4 RUN and FYVE domain containing 4 JBrowse link 37 24,809,365 24,830,254 RGD:9068941
G STING1 stimulator of interferon response cGAMP interactor 1 JBrowse link 2 34,783,947 34,792,204 RGD:13508589
G STX12 syntaxin 12 JBrowse link 2 72,546,178 72,582,706 RGD:13508589
G SYNPO2 synaptopodin 2 JBrowse link 32 37,844,844 38,026,755 RGD:9068941
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 JBrowse link 18 49,784,480 49,794,361 RGD:13508589
G TMEM41B transmembrane protein 41B JBrowse link 21 32,598,075 32,632,614 RGD:13508589
G TP53INP1 tumor protein p53 inducible nuclear protein 1 JBrowse link 29 39,575,782 39,593,389 RGD:13508589
G TP53INP2 tumor protein p53 inducible nuclear protein 2 JBrowse link 24 23,768,208 23,801,268 RGD:13508589
G TRAPPC8 trafficking protein particle complex 8 JBrowse link 7 57,665,209 57,752,959 RGD:13508589
G UBQLN1 ubiquilin 1 JBrowse link 1 75,767,345 75,812,278 RGD:13508589
G UBXN2A UBX domain protein 2A JBrowse link 17 18,446,856 18,491,797 RGD:13508589
G UBXN2B UBX domain protein 2B JBrowse link 29 9,229,070 9,258,269 RGD:13508589
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 26 968,714 982,244 RGD:9068941
G VMP1 vacuole membrane protein 1 JBrowse link 9 34,197,045 34,340,401 RGD:13508589
G WDR45 WD repeat domain 45 JBrowse link X 42,221,261 42,237,535 RGD:13508589
G WDR45B WD repeat domain 45B RGD:13508589
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 9 15,115,098 15,147,893 RGD:13508589
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 6 12,656,469 12,698,623 RGD:13508589
autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 6 18,252,543 18,266,033 RGD:13508589
G EPG5 ectopic P-granules autophagy protein 5 homolog JBrowse link 7 45,215,232 45,318,736 RGD:13508589
G LAMP2 lysosomal associated membrane protein 2 JBrowse link X 92,405,946 92,444,527 RGD:13508589
G LIX1 limb and CNS expressed 1 JBrowse link 3 12,581,462 12,641,198 RGD:13508589
G LIX1L limb and CNS expressed 1 like JBrowse link 17 58,729,143 58,747,869 RGD:13508589
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 24 23,672,343 23,673,937 RGD:13508589
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 5 65,669,553 65,683,445 RGD:13508589
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma JBrowse link 7 33,364,569 33,369,080 RGD:13508589
G MCOLN1 mucolipin 1 JBrowse link 20 52,318,411 52,327,389 RGD:9068941
G MFSD8 major facilitator superfamily domain containing 8 JBrowse link 19 12,905,336 13,030,901 RGD:13508589
G RUBCNL rubicon like autophagy enhancer JBrowse link 22 4,874,384 4,903,044 RGD:13508589
G SNAP29 synaptosome associated protein 29 JBrowse link 26 30,606,195 30,630,441 RGD:9068941
G SNAPIN SNAP associated protein JBrowse link 7 43,410,554 43,411,929 RGD:13508589
G SNX14 sorting nexin 14 JBrowse link 12 45,526,042 45,598,868 RGD:9068941
G STX17 syntaxin 17 JBrowse link 11 56,885,874 56,951,714 RGD:13508589
G TECPR1 tectonin beta-propeller repeat containing 1 JBrowse link 6 11,086,498 11,112,236 RGD:13508589
G UBQLN1 ubiquilin 1 JBrowse link 1 75,767,345 75,812,278 RGD:13508589
G UVRAG UV radiation resistance associated JBrowse link 21 22,505,968 22,821,027 RGD:13508589
G VAMP7 vesicle associated membrane protein 7 JBrowse link X 123,717,524 123,783,781 RGD:9068941
G VAMP8 vesicle associated membrane protein 8 JBrowse link 17 39,497,628 39,501,734 RGD:9068941
G VCP valosin containing protein JBrowse link 11 51,636,986 51,651,749 RGD:13508589
G VIPAS39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog JBrowse link 8 50,233,162 50,258,030 RGD:9068941
G VPS16 VPS16 core subunit of CORVET and HOPS complexes JBrowse link 24 18,401,440 18,424,605 RGD:13508589
G VPS33A VPS33A core subunit of CORVET and HOPS complexes JBrowse link 26 7,090,669 7,119,913 RGD:9068941
G VPS33B VPS33B late endosome and lysosome associated JBrowse link 3 53,220,199 53,239,738 RGD:9068941
G VTI1B vesicle transport through interaction with t-SNAREs 1B JBrowse link 8 41,619,365 41,650,389 RGD:9068941
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 6 12,656,469 12,698,623 RGD:9068941
autophagosome membrane docking term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG14 autophagy related 14 JBrowse link 8 31,199,097 31,234,200 RGD:13508589
G SNAP29 synaptosome associated protein 29 JBrowse link 26 30,606,195 30,630,441 RGD:13508589
G STX17 syntaxin 17 JBrowse link 11 56,885,874 56,951,714 RGD:13508589
G VAMP8 vesicle associated membrane protein 8 JBrowse link 17 39,497,628 39,501,734 RGD:9068941
autophagosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 2 81,196,355 81,215,736 RGD:9068941
G GBA glucosylceramidase beta JBrowse link 7 42,317,704 42,322,285 RGD:13508589
G PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha JBrowse link 21 39,693,211 39,868,603 RGD:9068941
G PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta JBrowse link 38 974,248 1,016,226 RGD:13508589
autophagosome-endosome fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RUBCNL rubicon like autophagy enhancer JBrowse link 22 4,874,384 4,903,044 RGD:13508589
autophagosome-lysosome fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 2 81,196,355 81,215,736 RGD:9068941
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 6 18,252,543 18,266,033 RGD:13508589
G RUBCNL rubicon like autophagy enhancer JBrowse link 22 4,874,384 4,903,044 RGD:13508589
autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 18 42,903,815 43,073,918 RGD:13508589
G ANXA7 annexin A7 JBrowse link 4 23,933,959 23,961,968 RGD:9068941
G ARSA arylsulfatase A JBrowse link 10 16,691,927 16,694,346 RGD:9068941
G ARSB arylsulfatase B JBrowse link 3 27,870,111 28,034,906 RGD:9068941
G ATG10 autophagy related 10 JBrowse link 3 25,214,203 25,436,448 RGD:9068941
G ATG12 autophagy related 12 JBrowse link 11 5,531,062 5,543,034 RGD:9068941
G ATG14 autophagy related 14 JBrowse link 8 31,199,097 31,234,200 RGD:9068941
G ATG16L2 autophagy related 16 like 2 JBrowse link 21 25,404,667 25,433,456 RGD:9068941
G ATG3 autophagy related 3 JBrowse link 33 17,046,951 17,073,203 RGD:9068941
G ATG4A autophagy related 4A cysteine peptidase JBrowse link X 81,629,346 81,688,086 RGD:13508589
G ATG4B autophagy related 4B cysteine peptidase JBrowse link 25 51,494,316 51,518,683 RGD:13508589
G ATG4C autophagy related 4C cysteine peptidase JBrowse link 5 47,273,387 47,359,452 RGD:13508589
G ATG4D autophagy related 4D cysteine peptidase JBrowse link 20 50,618,458 50,623,703 RGD:13508589
G ATG5 autophagy related 5 JBrowse link 12 63,565,859 63,692,383 RGD:13508589
G ATG7 autophagy related 7 JBrowse link 20 6,916,354 7,154,849 RGD:13508589
G ATG9A autophagy related 9A JBrowse link 37 25,768,287 25,777,529 RGD:13508589
G ATG9B autophagy related 9B JBrowse link 16 15,072,436 15,082,867 RGD:13508589
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 2 81,196,355 81,215,736 RGD:9068941
G ATP6AP1L ATPase H+ transporting accessory protein 1 like JBrowse link 3 25,168,116 25,191,547 RGD:13508589
G BECN1 beclin 1 JBrowse link 9 20,204,203 20,215,081 RGD:13508589
G BECN2 beclin 2 JBrowse link 7 33,318,124 33,356,388 RGD:9068941
G C11H9orf72 chromosome 11 C9orf72 homolog JBrowse link 11 45,664,942 45,688,777 RGD:13508589
G C1H19orf12 chromosome 1 C19orf12 homolog JBrowse link 1 121,758,579 121,767,162 RGD:9068941
G CHMP4B charged multivesicular body protein 4B JBrowse link 24 22,995,677 23,050,084 RGD:13508589
G CTSB cathepsin B JBrowse link 25 26,048,237 26,056,570 RGD:9068941
G DRD2 dopamine receptor D2 JBrowse link 5 19,732,842 19,795,241 RGD:9068941
G DRD3 dopamine receptor D3 JBrowse link 33 18,369,362 18,414,465 RGD:9068941
G DYNLRB1 dynein light chain roadblock-type 1 JBrowse link 24 23,633,580 23,653,273 RGD:13508589
G EI24 EI24 autophagy associated transmembrane protein JBrowse link 5 8,949,886 8,963,967 RGD:9068941
G EPG5 ectopic P-granules autophagy protein 5 homolog JBrowse link 7 45,215,232 45,318,736 RGD:13508589
G EPM2A EPM2A glucan phosphatase, laforin JBrowse link 1 36,835,775 36,977,653 RGD:13508589
G GABARAPL1 GABA type A receptor associated protein like 1 JBrowse link 27 35,783,203 35,791,576 RGD:13508589
G GABARAPL2 GABA type A receptor associated protein like 2 JBrowse link 5 75,230,214 75,240,724 RGD:13508589
G GBA glucosylceramidase beta JBrowse link 7 42,317,704 42,322,285 RGD:9068941
G HMGB1 high mobility group box 1 JBrowse link 25 9,431,223 9,558,167 RGD:13508589
G ITGB4 integrin subunit beta 4 JBrowse link 9 4,825,148 4,855,266 RGD:13508589
G LAMP2 lysosomal associated membrane protein 2 JBrowse link X 92,405,946 92,444,527 RGD:9068941
G LIX1 limb and CNS expressed 1 JBrowse link 3 12,581,462 12,641,198 RGD:13508589
G LIX1L limb and CNS expressed 1 like JBrowse link 17 58,729,143 58,747,869 RGD:13508589
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 24 23,672,343 23,673,937 RGD:13508589
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 5 65,669,553 65,683,445 RGD:13508589
G NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1 JBrowse link 35 16,920,687 16,921,829 RGD:13508589
G NPC1 NPC intracellular cholesterol transporter 1 JBrowse link 7 64,764,941 64,802,507 RGD:9068941
G NRBF2 nuclear receptor binding factor 2 JBrowse link 4 14,958,142 14,991,146 RGD:13508589
G OPTN optineurin JBrowse link 2 23,356,471 23,390,569 RGD:13508589
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 7 48,663,381 48,800,350 RGD:9068941
G PMP22 peripheral myelin protein 22 JBrowse link 5 38,806,731 38,839,002 RGD:9068941
G PRAF2 PRA1 domain family member 2 JBrowse link X 42,218,038 42,221,075 RGD:13508589
G PSEN1 presenilin 1 JBrowse link 8 46,495,551 46,569,532 RGD:9068941
G RAB12 RAB12, member RAS oncogene family JBrowse link 7 74,752,697 74,791,872 RGD:13508589
G RAB1A RAB1A, member RAS oncogene family JBrowse link 10 64,564,351 64,590,654 RGD:13508589
G RAB8A RAB8A, member RAS oncogene family JBrowse link 20 46,334,601 46,351,907 RGD:13508589
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 29 4,445,668 4,544,223 RGD:9068941
G S100A8 S100 calcium binding protein A8 JBrowse link 7 43,540,667 43,541,604 RGD:9068941
G S100A9 S100 calcium binding protein A9 JBrowse link 7 43,566,993 43,570,074 RGD:9068941
G SQSTM1 sequestosome 1 JBrowse link 11 1,859,776 1,869,289 RGD:9068941
G SRPX sushi repeat containing protein X-linked JBrowse link X 32,905,380 33,017,642 RGD:9068941
G SYT11 synaptotagmin 11 JBrowse link 7 41,910,102 41,929,020 RGD:13508589
G TBC1D5 TBC1 domain family member 5 JBrowse link 23 25,206,825 25,758,026 RGD:9068941
G TECPR1 tectonin beta-propeller repeat containing 1 JBrowse link 6 11,086,498 11,112,236 RGD:9068941
G TP53 tumor protein p53 JBrowse link 5 32,561,406 32,565,149 RGD:13508589
G TRAPPC4 trafficking protein particle complex 4 JBrowse link 5 14,830,604 14,833,444 RGD:9068941
G TRIM11 tripartite motif containing 11 JBrowse link 14 640,375 647,427 RGD:13508589
G TRIM17 tripartite motif containing 17 JBrowse link 14 633,767 639,543 RGD:13508589
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 26 968,714 982,244 RGD:9068941
G ULK2 unc-51 like autophagy activating kinase 2 JBrowse link 5 40,355,070 40,437,758 RGD:9068941
G UMOD uromodulin JBrowse link 6 24,991,459 25,006,735 RGD:9068941
G UVRAG UV radiation resistance associated JBrowse link 21 22,505,968 22,821,027 RGD:9068941
G VCP valosin containing protein JBrowse link 11 51,636,986 51,651,749 RGD:9068941
G VMP1 vacuole membrane protein 1 JBrowse link 9 34,197,045 34,340,401 RGD:13508589
G VPS11 VPS11 core subunit of CORVET and HOPS complexes JBrowse link 5 14,776,975 14,786,736 RGD:13508589
G VPS13A vacuolar protein sorting 13 homolog A JBrowse link 1 81,191,125 81,426,337 RGD:13508589
G VPS39 VPS39 subunit of HOPS complex JBrowse link 30 9,166,510 9,213,806 RGD:13508589
G VPS51 VPS51 subunit of GARP complex JBrowse link 18 52,083,896 52,106,129 RGD:13508589
G VTI1A vesicle transport through interaction with t-SNAREs 1A JBrowse link 28 23,496,553 23,854,609 RGD:13508589
G WDR45 WD repeat domain 45 JBrowse link X 42,221,261 42,237,535 RGD:13508589
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 9 15,115,098 15,147,893 RGD:13508589
autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 18 42,903,815 43,073,918 RGD:9068941
G ATG12 autophagy related 12 JBrowse link 11 5,531,062 5,543,034 RGD:13508589
G ATG13 autophagy related 13 JBrowse link 18 42,834,538 42,886,873 RGD:13508589
G ATG2B autophagy related 2B JBrowse link 8 65,039,960 65,110,811 RGD:13508589
G ATG3 autophagy related 3 JBrowse link 33 17,046,951 17,073,203 RGD:13508589
G ATG5 autophagy related 5 JBrowse link 12 63,565,859 63,692,383 RGD:13508589
G ATG7 autophagy related 7 JBrowse link 20 6,916,354 7,154,849 RGD:13508589
G ATG9A autophagy related 9A JBrowse link 37 25,768,287 25,777,529 RGD:13508589
G BECN1 beclin 1 JBrowse link 9 20,204,203 20,215,081 RGD:9068941
G CAPN10 calpain 10 JBrowse link 25 50,555,402 50,566,132 RGD:9068941
G CISD2 CDGSH iron sulfur domain 2 JBrowse link 32 24,257,909 24,274,732 RGD:13508589
G CTSK cathepsin K JBrowse link 17 59,928,725 59,938,293 RGD:9068941
G FBXO7 F-box protein 7 JBrowse link 10 30,928,059 30,948,858 RGD:13508589
G FIS1 fission, mitochondrial 1 JBrowse link 6 8,642,014 8,645,812 RGD:13508589
G FUNDC1 FUN14 domain containing 1 JBrowse link X 38,492,470 38,505,512 RGD:13508589
G FUNDC2 FUN14 domain containing 2 JBrowse link X 123,046,451 123,064,580 RGD:13508589
G GABARAP GABA type A receptor-associated protein JBrowse link 5 32,207,879 32,209,976 RGD:13508589
G GABARAPL1 GABA type A receptor associated protein like 1 JBrowse link 27 35,783,203 35,791,576 RGD:13508589
G GABARAPL2 GABA type A receptor associated protein like 2 JBrowse link 5 75,230,214 75,240,724 RGD:13508589
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 24 23,672,343 23,673,937 RGD:13508589
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 5 65,669,553 65,683,445 RGD:13508589
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma JBrowse link 7 33,364,569 33,369,080 RGD:13508589
G PINK1 PTEN induced kinase 1 JBrowse link 2 78,276,091 78,293,761 RGD:13508589
G PPARGC1A PPARG coactivator 1 alpha JBrowse link 3 85,645,942 86,284,570 RGD:9068941
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 1 49,886,887 51,201,930 RGD:13508589
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 29 4,445,668 4,544,223 RGD:13508589
G SLC25A46 solute carrier family 25 member 46 JBrowse link 3 1,700,310 1,715,841 RGD:13508589
G USP30 ubiquitin specific peptidase 30 JBrowse link 26 17,918,852 17,981,947 RGD:9068941
G WDR45 WD repeat domain 45 JBrowse link X 42,221,261 42,237,535 RGD:13508589
G WDR45B WD repeat domain 45B RGD:13508589
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 9 15,115,098 15,147,893 RGD:13508589
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 6 12,656,469 12,698,623 RGD:13508589
autophagy of nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG12 autophagy related 12 JBrowse link 11 5,531,062 5,543,034 RGD:13508589
G ATG13 autophagy related 13 JBrowse link 18 42,834,538 42,886,873 RGD:13508589
G ATG2B autophagy related 2B JBrowse link 8 65,039,960 65,110,811 RGD:13508589
G ATG3 autophagy related 3 JBrowse link 33 17,046,951 17,073,203 RGD:13508589
G ATG5 autophagy related 5 JBrowse link 12 63,565,859 63,692,383 RGD:13508589
G WDR45 WD repeat domain 45 JBrowse link X 42,221,261 42,237,535 RGD:13508589
G WDR45B WD repeat domain 45B RGD:13508589
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 9 15,115,098 15,147,893 RGD:13508589
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 6 12,656,469 12,698,623 RGD:13508589
autophagy of peroxisome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACBD5 acyl-CoA binding domain containing 5 JBrowse link 2 6,873,207 6,923,152 RGD:13508589
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 7 48,663,381 48,800,350 RGD:13508589
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 JBrowse link 23 27,902,500 27,973,609 RGD:13508589
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 29 4,445,668 4,544,223 RGD:13508589
G TRAPPC8 trafficking protein particle complex 8 JBrowse link 7 57,665,209 57,752,959 RGD:13508589
chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG5 autophagy related 5 JBrowse link 12 63,565,859 63,692,383 RGD:9068941
G ATG7 autophagy related 7 JBrowse link 20 6,916,354 7,154,849 RGD:9068941
G BAG3 BAG cochaperone 3 JBrowse link 28 29,792,612 29,815,466 RGD:9068941
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 5 11,292,219 11,296,851 RGD:9068941
G LAMP2 lysosomal associated membrane protein 2 JBrowse link X 92,405,946 92,444,527 RGD:9068941
G STUB1 STIP1 homology and U-box containing protein 1 JBrowse link 6 39,893,492 39,895,385 RGD:9068941
G SYNPO2 synaptopodin 2 JBrowse link 32 37,844,844 38,026,755 RGD:9068941
chaperone-mediated protein transport involved in chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 5 11,292,219 11,296,851 RGD:13508589
G LOC607182 heat shock cognate 71 kDa protein pseudogene RGD:13508589
engulfment of target by autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 6 10,385,781 10,498,071 RGD:13508589
glycophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 29 4,445,668 4,544,223 RGD:13508589
G STBD1 starch binding domain 1 JBrowse link 32 932,245 953,070 RGD:13508589
induction by virus of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 JBrowse link 30 7,144,727 7,248,014 RGD:9068941
G PHB2 prohibitin 2 JBrowse link 27 38,075,769 38,080,440 RGD:9068941
late endosomal microautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 5 11,292,219 11,296,851 RGD:13508589
G LOC607182 heat shock cognate 71 kDa protein pseudogene RGD:13508589
G VPS4A vacuolar protein sorting 4 homolog A JBrowse link 5 80,327,059 80,340,380 RGD:9068941
G VPS4B vacuolar protein sorting 4 homolog B JBrowse link 1 13,638,965 13,673,295 RGD:13508589
late nucleophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG7 autophagy related 7 JBrowse link 20 6,916,354 7,154,849 RGD:13508589
G ATG9A autophagy related 9A JBrowse link 37 25,768,287 25,777,529 RGD:13508589
lipophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AUP1 AUP1 lipid droplet regulating VLDL assembly factor JBrowse link 17 48,613,648 48,617,091 RGD:9068941
G RAB7A RAB7A, member RAS oncogene family JBrowse link 20 2,704,716 2,776,518 RGD:13508589
macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACBD5 acyl-CoA binding domain containing 5 JBrowse link 2 6,873,207 6,923,152 RGD:9068941
G ATG13 autophagy related 13 JBrowse link 18 42,834,538 42,886,873 RGD:13508589
G ATG14 autophagy related 14 JBrowse link 8 31,199,097 31,234,200 RGD:9068941
G ATG3 autophagy related 3 JBrowse link 33 17,046,951 17,073,203 RGD:9068941
G ATG5 autophagy related 5 JBrowse link 12 63,565,859 63,692,383 RGD:9068941
G ATG7 autophagy related 7 JBrowse link 20 6,916,354 7,154,849 RGD:9068941
G ATP6AP1L ATPase H+ transporting accessory protein 1 like JBrowse link 3 25,168,116 25,191,547 RGD:13508589
G BECN1 beclin 1 JBrowse link 9 20,204,203 20,215,081 RGD:9068941
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 6 18,252,543 18,266,033 RGD:9068941
G EI24 EI24 autophagy associated transmembrane protein JBrowse link 5 8,949,886 8,963,967 RGD:13508589
G GABARAP GABA type A receptor-associated protein JBrowse link 5 32,207,879 32,209,976 RGD:13508589
G GABARAPL1 GABA type A receptor associated protein like 1 JBrowse link 27 35,783,203 35,791,576 RGD:13508589
G GABARAPL2 GABA type A receptor associated protein like 2 JBrowse link 5 75,230,214 75,240,724 RGD:13508589
G HDAC10 histone deacetylase 10 JBrowse link 10 16,996,307 17,001,365 RGD:13508589
G ILRUN inflammation and lipid regulator with UBA-like and NBR1-like domains JBrowse link 12 3,861,063 3,955,356 RGD:13508589
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 24 23,672,343 23,673,937 RGD:13508589
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 5 65,669,553 65,683,445 RGD:13508589
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma JBrowse link 7 33,364,569 33,369,080 RGD:13508589
G NBR1 NBR1 autophagy cargo receptor JBrowse link 9 19,926,885 19,959,552 RGD:13508589
G PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha JBrowse link 21 39,693,211 39,868,603 RGD:9068941
G PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta JBrowse link 38 974,248 1,016,226 RGD:9068941
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 7 48,663,381 48,800,350 RGD:9068941
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 JBrowse link 23 27,902,500 27,973,609 RGD:13508589
G PLAA phospholipase A2 activating protein JBrowse link 11 45,121,423 45,159,093 RGD:13508589
G SQSTM1 sequestosome 1 JBrowse link 11 1,859,776 1,869,289 RGD:9068941
G TBC1D5 TBC1 domain family member 5 JBrowse link 23 25,206,825 25,758,026 RGD:9068941
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 JBrowse link 18 49,784,480 49,794,361 RGD:9068941
G TMEM106A transmembrane protein 106A JBrowse link 9 19,917,591 19,926,578 RGD:13508589
G TMEM74 transmembrane protein 74 JBrowse link 13 9,407,005 9,415,906 RGD:13508589
G TP53INP2 tumor protein p53 inducible nuclear protein 2 JBrowse link 24 23,768,208 23,801,268 RGD:9068941
G UBQLN1 ubiquilin 1 JBrowse link 1 75,767,345 75,812,278 RGD:9068941
G UBXN6 UBX domain protein 6 JBrowse link 20 55,228,026 55,246,333 RGD:13508589
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 26 968,714 982,244 RGD:13508589
G VCP valosin containing protein JBrowse link 11 51,636,986 51,651,749 RGD:13508589
G YOD1 YOD1 deubiquitinase JBrowse link 7 6,185,650 6,194,005 RGD:13508589
G ZFYVE1 zinc finger FYVE-type containing 1 JBrowse link 8 46,353,489 46,407,912 RGD:13508589
mitophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 18 42,903,815 43,073,918 RGD:9068941
G ATG13 autophagy related 13 JBrowse link 18 42,834,538 42,886,873 RGD:13508589
G ATG14 autophagy related 14 JBrowse link 8 31,199,097 31,234,200 RGD:13508589
G BECN1 beclin 1 JBrowse link 9 20,204,203 20,215,081 RGD:9068941
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 5 65,669,553 65,683,445 RGD:9068941
G PHB2 prohibitin 2 JBrowse link 27 38,075,769 38,080,440 RGD:9068941
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 1 49,886,887 51,201,930 RGD:9068941
G SQSTM1 sequestosome 1 JBrowse link 11 1,859,776 1,869,289 RGD:13508589
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 26 968,714 982,244 RGD:9068941
mitophagy by induced vacuole formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SPATA18 spermatogenesis associated 18 JBrowse link 13 44,996,770 45,034,327 RGD:13508589
negative regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BECN1 beclin 1 JBrowse link 9 20,204,203 20,215,081 RGD:9068941
G CHMP4A charged multivesicular body protein 4A JBrowse link 8 4,195,766 4,200,101 RGD:9068941
G CHMP4B charged multivesicular body protein 4B JBrowse link 24 22,995,677 23,050,084 RGD:13508589
G EHMT2 euchromatic histone lysine methyltransferase 2 JBrowse link 12 1,341,202 1,354,602 RGD:13508589
G FEZ1 fasciculation and elongation protein zeta 1 JBrowse link 5 9,001,927 9,044,330 RGD:9068941
G FEZ2 fasciculation and elongation protein zeta 2 JBrowse link 17 29,043,449 29,086,104 RGD:13508589
G LRRK2 leucine rich repeat kinase 2 JBrowse link 27 13,282,824 13,420,917 RGD:13508589
G MTM1 myotubularin 1 JBrowse link X 118,820,644 118,917,166 RGD:13508589
G NUPR1 nuclear protein 1, transcriptional regulator JBrowse link 6 18,222,367 18,224,015 RGD:13508589
G PHF13 PHD finger protein 13 JBrowse link 5 60,434,218 60,441,930 RGD:13508589
G PHF23 PHD finger protein 23 JBrowse link 5 32,202,636 32,207,738 RGD:13508589
G PINK1 PTEN induced kinase 1 JBrowse link 2 78,276,091 78,293,761 RGD:9068941
G SCFD1 sec1 family domain containing 1 JBrowse link 8 9,970,724 10,077,123 RGD:13508589
G SEC22B SEC22 homolog B, vesicle trafficking protein JBrowse link 17 57,094,038 57,115,891 RGD:13508589
G SMCR8 SMCR8-C9orf72 complex subunit RGD:13508589
G TMEM39A transmembrane protein 39A JBrowse link 33 23,083,979 23,121,269 RGD:9068941
negative regulation of autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLEC16A C-type lectin domain containing 16A JBrowse link 6 31,560,940 31,757,100 RGD:13508589
G PHF13 PHD finger protein 13 JBrowse link 5 60,434,218 60,441,930 RGD:13508589
G PHF23 PHD finger protein 23 JBrowse link 5 32,202,636 32,207,738 RGD:13508589
G RUBCN rubicon autophagy regulator JBrowse link 33 28,947,439 29,011,737 RGD:13508589
G TMEM39A transmembrane protein 39A JBrowse link 33 23,083,979 23,121,269 RGD:9068941
G UBQLN4 ubiquilin 4 JBrowse link 7 41,764,209 41,778,457 RGD:13508589
negative regulation of autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADRA1A adrenoceptor alpha 1A JBrowse link 25 30,690,959 30,801,484 RGD:9068941
G AKT1 AKT serine/threonine kinase 1 JBrowse link 8 72,317,399 72,335,686 RGD:13508589
G BCL2 BCL2 apoptosis regulator JBrowse link 1 13,733,849 13,900,653 RGD:13508589
G BECN1 beclin 1 JBrowse link 9 20,204,203 20,215,081 RGD:9068941
G BMF Bcl2 modifying factor JBrowse link 30 7,301,000 7,321,949 RGD:13508589
G CPTP ceramide-1-phosphate transfer protein JBrowse link 5 56,498,163 56,501,918 RGD:13508589
G DAP death associated protein JBrowse link 34 3,616,960 3,682,424 RGD:9068941
G DAPL1 death associated protein like 1 JBrowse link 36 4,678,544 4,698,711 RGD:13508589
G EIF4E eukaryotic translation initiation factor 4E JBrowse link 32 21,064,202 21,108,998 RGD:9068941
G EIF4G1 eukaryotic translation initiation factor 4 gamma 1 JBrowse link 34 17,194,588 17,214,498 RGD:13508589
G EIF4G2 eukaryotic translation initiation factor 4 gamma 2 JBrowse link 21 33,967,908 33,980,017 RGD:9068941
G EIF4G3 eukaryotic translation initiation factor 4 gamma 3 JBrowse link 2 77,822,686 78,149,943 RGD:9068941
G FOXK1 forkhead box K1 JBrowse link 6 12,863,093 12,931,877 RGD:13508589
G FOXK2 forkhead box K2 RGD:9068941
G GATA4 GATA binding protein 4 JBrowse link 25 26,126,172 26,211,474 RGD:9068941
G GOLGA2 golgin A2 JBrowse link 9 55,234,836 55,251,698 RGD:9068941
G HERC1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 JBrowse link 30 28,195,296 28,379,343 RGD:13508589
G HTR2B 5-hydroxytryptamine receptor 2B JBrowse link 25 43,042,306 43,056,361 RGD:9068941
G IL10 interleukin 10 JBrowse link 7 5,933,285 5,937,057 RGD:13508589
G IL10RA interleukin 10 receptor subunit alpha JBrowse link 5 15,675,775 15,688,935 RGD:9068941
G IL3 interleukin 3 JBrowse link 11 20,330,480 20,332,668 RGD:9068941
G KDM4A lysine demethylase 4A JBrowse link 15 16,521,760 16,570,965 RGD:9068941
G KIF25 kinesin family member 25 JBrowse link 1 55,537,884 55,588,346 RGD:9068941
G KLHL22 kelch like family member 22 JBrowse link 26 30,248,253 30,281,989 RGD:9068941
G LEP leptin JBrowse link 14 8,115,396 8,130,946 RGD:13508589
G LEPR leptin receptor JBrowse link 5 44,684,118 44,775,626 RGD:13508589
G MCL1 MCL1 apoptosis regulator, BCL2 family member JBrowse link 17 59,759,605 59,763,111 RGD:13508589
G MIR223 microRNA mir-223 JBrowse link X 50,838,131 50,838,233 RGD:9068941
G MT3 metallothionein 3 RGD:13508589
G MTMR9 myotubularin related protein 9 JBrowse link 25 26,571,383 26,624,948 RGD:13508589
G MTOR mechanistic target of rapamycin kinase JBrowse link 2 84,818,893 84,939,283 RGD:13508589
G NAMPT nicotinamide phosphoribosyltransferase JBrowse link 18 14,110,045 14,211,268 RGD:9068941
G NUPR1 nuclear protein 1, transcriptional regulator JBrowse link 6 18,222,367 18,224,015 RGD:9068941
G PTK2 protein tyrosine kinase 2 JBrowse link 13 35,302,439 35,541,336 RGD:9068941
G PTPN22 protein tyrosine phosphatase non-receptor type 22 JBrowse link 17 51,623,628 51,683,039 RGD:9068941
G RASIP1 Ras interacting protein 1 JBrowse link 1 107,583,169 107,597,683 RGD:13508589
G RNF5 ring finger protein 5 JBrowse link 12 1,571,277 1,575,151 RGD:13508589
G RRAGA Ras related GTP binding A JBrowse link 11 38,886,990 38,888,634 RGD:9068941
G RUBCN rubicon autophagy regulator JBrowse link 33 28,947,439 29,011,737 RGD:9068941
G SIRT2 sirtuin 2 JBrowse link 1 114,224,922 114,235,041 RGD:9068941
G SMG1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase JBrowse link 6 26,224,837 26,306,394 RGD:13508589
G STAT3 signal transducer and activator of transcription 3 JBrowse link 9 20,539,660 20,614,631 RGD:13508589
G TBC1D14 TBC1 domain family member 14 JBrowse link 3 58,992,743 59,097,581 RGD:9068941
G WASHC1 WASH complex subunit 1 JBrowse link 27 42,102,694 42,118,850 RGD:9068941
G WDR6 WD repeat domain 6 JBrowse link 20 40,148,262 40,157,770 RGD:9068941
negative regulation of autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PINK1 PTEN induced kinase 1 JBrowse link 2 78,276,091 78,293,761 RGD:9068941
G TSPO translocator protein JBrowse link 10 22,388,498 22,399,329 RGD:13508589
negative regulation of chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTSA cathepsin A JBrowse link 24 33,183,090 33,189,248 RGD:9068941
G SNCA synuclein alpha JBrowse link 32 12,915,871 13,079,338 RGD:9068941
negative regulation of macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HMOX1 heme oxygenase 1 JBrowse link 10 28,744,404 28,751,544 RGD:13508589
G LRRK2 leucine rich repeat kinase 2 JBrowse link 27 13,282,824 13,420,917 RGD:9068941
G LZTS1 leucine zipper tumor suppressor 1 JBrowse link 25 36,764,235 36,814,204 RGD:13508589
G MTOR mechanistic target of rapamycin kinase JBrowse link 2 84,818,893 84,939,283 RGD:13508589
G NPC1 NPC intracellular cholesterol transporter 1 JBrowse link 7 64,764,941 64,802,507 RGD:9068941
G NRBP2 nuclear receptor binding protein 2 JBrowse link 13 37,391,385 37,398,691 RGD:9068941
G PINK1 PTEN induced kinase 1 JBrowse link 2 78,276,091 78,293,761 RGD:9068941
G POLDIP2 DNA polymerase delta interacting protein 2 JBrowse link 9 42,597,792 42,607,576 RGD:9068941
G QSOX1 quiescin sulfhydryl oxidase 1 JBrowse link 7 13,718,799 13,754,115 RGD:9068941
G SMG1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase JBrowse link 6 26,224,837 26,306,394 RGD:13508589
G TSC1 TSC complex subunit 1 JBrowse link 9 51,409,307 51,459,546 RGD:9068941
G TSC2 TSC complex subunit 2 JBrowse link 6 38,865,509 38,898,977 RGD:9068941
G USP36 ubiquitin specific peptidase 36 JBrowse link 9 2,547,316 2,587,360 RGD:13508589
negative regulation of macroautophagy by TORC1 signaling term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLEC16A C-type lectin domain containing 16A JBrowse link 6 31,560,940 31,757,100 RGD:13508589
negative regulation of mitophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLEC16A C-type lectin domain containing 16A JBrowse link 6 31,560,940 31,757,100 RGD:13508589
G RNF41 ring finger protein 41 JBrowse link 10 512,650 521,293 RGD:13508589
G TIGAR TP53 induced glycolysis regulatory phosphatase JBrowse link 27 40,521,751 40,549,304 RGD:13508589
G TP53 tumor protein p53 JBrowse link 5 32,561,406 32,565,149 RGD:13508589
G USP30 ubiquitin specific peptidase 30 JBrowse link 26 17,918,852 17,981,947 RGD:9068941
negative regulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HTRA2 HtrA serine peptidase 2 JBrowse link 17 48,610,408 48,613,399 RGD:13508589
negative regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G VPS13C vacuolar protein sorting 13 homolog C JBrowse link 30 26,600,181 26,776,347 RGD:13508589
parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HDAC6 histone deacetylase 6 JBrowse link X 42,004,268 42,024,726 RGD:9068941
G MFN2 mitofusin 2 JBrowse link 2 84,284,719 84,310,715 RGD:13508589
G OPTN optineurin JBrowse link 2 23,356,471 23,390,569 RGD:13508589
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 1 49,886,887 51,201,930 RGD:9068941
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 6 10,385,781 10,498,071 RGD:13508589
piecemeal microautophagy of the nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG13 autophagy related 13 JBrowse link 18 42,834,538 42,886,873 RGD:13508589
G ATG7 autophagy related 7 JBrowse link 20 6,916,354 7,154,849 RGD:13508589
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 29 4,445,668 4,544,223 RGD:13508589
positive regulation by symbiont of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG5 autophagy related 5 JBrowse link 12 63,565,859 63,692,383 RGD:13508589
G ATG7 autophagy related 7 JBrowse link 20 6,916,354 7,154,849 RGD:9068941
G LOC606863 immunity-related GTPase family M protein-like JBrowse link 11 506,981 523,338 RGD:9068941
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 26 968,714 982,244 RGD:13508589
G ULK2 unc-51 like autophagy activating kinase 2 JBrowse link 5 40,355,070 40,437,758 RGD:9068941
positive regulation of aggrephagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BAG3 BAG cochaperone 3 JBrowse link 28 29,792,612 29,815,466 RGD:13508589
G HSPB8 heat shock protein family B (small) member 8 JBrowse link 26 15,337,718 15,349,993 RGD:13508589
G HTT huntingtin JBrowse link 3 61,076,934 61,221,462 RGD:13508589
positive regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BECN1 beclin 1 JBrowse link 9 20,204,203 20,215,081 RGD:9068941
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 6 42,612,130 42,681,161 RGD:13508589
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link 9 55,855,576 55,894,915 RGD:13508589
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha JBrowse link 2 10,464,019 10,642,365 RGD:13508589
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta JBrowse link 9 23,445,350 23,473,195 RGD:9068941
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma JBrowse link 10 1,670,076 1,680,975 RGD:13508589
G RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 JBrowse link 19 37,861,844 38,006,433 RGD:9068941
G RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 JBrowse link 38 14,927,670 15,025,554 RGD:13508589
G RALB RAS like proto-oncogene B JBrowse link 19 29,820,006 29,868,345 RGD:13508589
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 JBrowse link 6 61,439,414 61,471,414 RGD:9068941
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 26 968,714 982,244 RGD:9068941
positive regulation of autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADRB2 adrenoceptor beta 2 JBrowse link 4 60,048,502 60,050,447 RGD:13508589
G CALCOCO2 calcium binding and coiled-coil domain 2 JBrowse link 9 25,050,603 25,078,147 RGD:13508589
G CLEC16A C-type lectin domain containing 16A JBrowse link 6 31,560,940 31,757,100 RGD:13508589
G FYCO1 FYVE and coiled-coil domain autophagy adaptor 1 JBrowse link 20 42,520,241 42,593,886 RGD:13508589
G LOC606863 immunity-related GTPase family M protein-like JBrowse link 11 506,981 523,338 RGD:9068941
G SMCR8 SMCR8-C9orf72 complex subunit RGD:13508589
positive regulation of autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AGER advanced glycosylation end-product specific receptor JBrowse link 12 1,574,251 1,577,410 RGD:9068941
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 18 42,903,815 43,073,918 RGD:9068941
G ATG16L1 autophagy related 16 like 1 JBrowse link 25 44,761,034 44,800,033 RGD:9068941
G ATG7 autophagy related 7 JBrowse link 20 6,916,354 7,154,849 RGD:9068941
G BECN1 beclin 1 JBrowse link 9 20,204,203 20,215,081 RGD:9068941
G DAPK1 death associated protein kinase 1 JBrowse link 1 72,278,939 72,448,907 RGD:13508589
G DCN decorin JBrowse link 15 31,833,492 31,887,699 RGD:13508589
G DHRSX dehydrogenase/reductase X-linked JBrowse link X 1,172,404 1,288,088 RGD:13508589
G FLCN folliculin JBrowse link 5 42,176,093 42,195,718 RGD:9068941
G FOXO1 forkhead box O1 JBrowse link 25 603,433 706,961 RGD:13508589
G FOXO3 forkhead box O3 JBrowse link 12 65,552,455 65,673,467 RGD:13508589
G GSK3A glycogen synthase kinase 3 alpha JBrowse link 1 112,129,116 112,138,714 RGD:13508589
G GSK3B glycogen synthase kinase 3 beta JBrowse link 33 23,458,369 23,659,878 RGD:9068941
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 8 36,614,045 36,656,692 RGD:9068941
G HMGB1 high mobility group box 1 JBrowse link 25 9,431,223 9,558,167 RGD:13508589
G IFNG interferon gamma JBrowse link 10 10,406,866 10,411,698 RGD:13508589
G KAT5 lysine acetyltransferase 5 JBrowse link 18 51,499,615 51,507,434 RGD:9068941
G LOC606863 immunity-related GTPase family M protein-like JBrowse link 11 506,981 523,338 RGD:9068941
G LRRK2 leucine rich repeat kinase 2 JBrowse link 27 13,282,824 13,420,917 RGD:13508589
G MAP2K1 mitogen-activated protein kinase kinase 1 JBrowse link 30 30,683,192 30,760,479 RGD:9068941
G MEFV MEFV innate immuity regulator, pyrin JBrowse link 6 37,964,776 37,984,830 RGD:13508589
G MID2 midline 2 JBrowse link X 81,267,037 81,467,613 RGD:9068941
G MTDH metadherin JBrowse link 29 41,675,601 41,732,389 RGD:13508589
G NPRL2 NPR2 like, GATOR1 complex subunit JBrowse link 20 39,005,699 39,009,183 RGD:13508589
G OPTN optineurin JBrowse link 2 23,356,471 23,390,569 RGD:9068941
G ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 JBrowse link 9 22,594,425 22,601,108 RGD:9068941
G PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha JBrowse link 21 39,693,211 39,868,603 RGD:13508589
G PIM2 Pim-2 proto-oncogene, serine/threonine kinase JBrowse link X 42,072,495 42,077,741 RGD:9068941
G PLEKHF1 pleckstrin homology and FYVE domain containing 1 JBrowse link 1 121,776,122 121,802,881 RGD:9068941
G PLK2 polo like kinase 2 JBrowse link 2 45,359,865 45,365,496 RGD:9068941
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 4 68,579,061 68,614,548 RGD:9068941
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 5 52,809,792 52,855,072 RGD:13508589
G PRKD1 protein kinase D1 JBrowse link 8 9,004,641 9,327,054 RGD:9068941
G RNF152 ring finger protein 152 JBrowse link 1 14,914,508 15,001,843 RGD:13508589
G ROCK1 Rho associated coiled-coil containing protein kinase 1 JBrowse link 7 66,862,614 67,001,538 RGD:9068941
G SH3BP4 SH3 domain binding protein 4 JBrowse link 25 46,049,631 46,133,065 RGD:13508589
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 JBrowse link 6 61,439,414 61,471,414 RGD:9068941
G STK11 serine/threonine kinase 11 JBrowse link 20 57,558,966 57,579,163 RGD:13508589
G SVIP small VCP interacting protein JBrowse link 21 44,408,467 44,418,160 RGD:9068941
G TFEB transcription factor EB JBrowse link 12 10,367,979 10,423,478 RGD:9068941
G TICAM1 toll like receptor adaptor molecule 1 JBrowse link 20 54,948,237 54,961,996 RGD:9068941
G TLR9 toll like receptor 9 JBrowse link 20 37,529,322 37,547,117 RGD:9068941
G TMEM59 transmembrane protein 59 JBrowse link 5 54,959,895 54,991,978 RGD:13508589
G TP53INP1 tumor protein p53 inducible nuclear protein 1 JBrowse link 29 39,575,782 39,593,389 RGD:13508589
G TP53INP2 tumor protein p53 inducible nuclear protein 2 JBrowse link 24 23,768,208 23,801,268 RGD:13508589
G TPCN1 two pore segment channel 1 JBrowse link 26 10,599,898 10,662,269 RGD:13508589
G TRIM21 tripartite motif containing 21 JBrowse link 21 26,775,227 26,783,180 RGD:13508589
G TRIM22 tripartite motif containing 22 JBrowse link 21 28,677,196 28,696,413 RGD:13508589
G TRIM27 tripartite motif containing 27 JBrowse link 35 25,904,381 25,922,531 RGD:13508589
G TRIM34 tripartite motif containing 34 JBrowse link 21 28,635,177 28,656,759 RGD:13508589
G TRIM38 tripartite motif containing 38 JBrowse link 35 23,894,521 23,939,392 RGD:13508589
G TRIM65 tripartite motif containing 65 JBrowse link 9 4,713,535 4,720,268 RGD:13508589
G TRIM68 tripartite motif containing 68 JBrowse link 21 26,982,173 26,992,162 RGD:13508589
G TRIM8 tripartite motif containing 8 JBrowse link 28 15,124,310 15,138,660 RGD:9068941
G TRIML1 tripartite motif family like 1 JBrowse link 16 42,954,353 42,984,128 RGD:13508589
G TRIML2 tripartite motif family like 2 JBrowse link 16 42,984,204 43,000,037 RGD:13508589
G TSC2 TSC complex subunit 2 JBrowse link 6 38,865,509 38,898,977 RGD:9068941
G UFL1 UFM1 specific ligase 1 JBrowse link 12 54,988,200 55,023,414 RGD:9068941
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 26 968,714 982,244 RGD:9068941
G XBP1 X-box binding protein 1 JBrowse link 26 22,162,675 22,168,149 RGD:9068941
G ZC3H12A zinc finger CCCH-type containing 12A JBrowse link 15 4,972,369 4,984,218 RGD:13508589
positive regulation of autophagy in response to ER overload term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCL2L11 BCL2 like 11 JBrowse link 17 35,619,804 35,665,782 RGD:9068941
G BID BH3 interacting domain death agonist JBrowse link 27 45,344,304 45,355,735 RGD:9068941
G DDIT3 DNA damage inducible transcript 3 JBrowse link 10 1,606,693 1,612,410 RGD:9068941
positive regulation of autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BNIP3 BCL2 interacting protein 3 JBrowse link 28 40,037,681 40,050,499 RGD:9068941
G FBXO7 F-box protein 7 JBrowse link 10 30,928,059 30,948,858 RGD:13508589
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 8 36,614,045 36,656,692 RGD:13508589
G HTT huntingtin JBrowse link 3 61,076,934 61,221,462 RGD:13508589
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 1 49,886,887 51,201,930 RGD:9068941
positive regulation of autophagy of mitochondrion in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP5IF1 ATP synthase inhibitory factor subunit 1 JBrowse link 2 72,188,562 72,191,344 RGD:13508589
G GBA glucosylceramidase beta JBrowse link 7 42,317,704 42,322,285 RGD:13508589
G HK2 hexokinase 2 JBrowse link 17 48,287,367 48,329,470 RGD:13508589
G MUL1 mitochondrial E3 ubiquitin protein ligase 1 JBrowse link 2 78,394,013 78,402,032 RGD:13508589
G PINK1 PTEN induced kinase 1 JBrowse link 2 78,276,091 78,293,761 RGD:9068941
positive regulation of chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PLK3 polo like kinase 3 JBrowse link 15 15,519,042 15,523,960 RGD:13508589
positive regulation of lipophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADRB2 adrenoceptor beta 2 JBrowse link 4 60,048,502 60,050,447 RGD:13508589
G HTT huntingtin JBrowse link 3 61,076,934 61,221,462 RGD:13508589
G SESN2 sestrin 2 JBrowse link 2 72,151,464 72,168,861 RGD:13508589
G SPTLC1 serine palmitoyltransferase long chain base subunit 1 JBrowse link 1 94,997,240 95,062,424 RGD:13508589
G SPTLC2 serine palmitoyltransferase long chain base subunit 2 JBrowse link 8 50,291,797 50,401,202 RGD:13508589
positive regulation of macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BNIP3 BCL2 interacting protein 3 JBrowse link 28 40,037,681 40,050,499 RGD:9068941
G BNIP3L BCL2 interacting protein 3 like JBrowse link 25 31,133,512 31,149,750 RGD:9068941
G C11H9orf72 chromosome 11 C9orf72 homolog JBrowse link 11 45,664,942 45,688,777 RGD:13508589
G DCN decorin JBrowse link 15 31,833,492 31,887,699 RGD:13508589
G EPM2A EPM2A glucan phosphatase, laforin JBrowse link 1 36,835,775 36,977,653 RGD:13508589
G GNAI3 G protein subunit alpha i3 JBrowse link 6 42,275,060 42,315,545 RGD:13508589
G GPSM1 G protein signaling modulator 1 JBrowse link 9 49,124,828 49,152,079 RGD:9068941
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 8 36,614,045 36,656,692 RGD:13508589
G HMOX1 heme oxygenase 1 JBrowse link 10 28,744,404 28,751,544 RGD:13508589
G IKBKG inhibitor of nuclear factor kappa B kinase regulatory subunit gamma JBrowse link X 122,232,052 122,253,499 RGD:9068941
G IL4 interleukin 4 JBrowse link 11 20,972,693 20,981,539 RGD:13508589
G KDR kinase insert domain receptor JBrowse link 13 47,442,861 47,484,574 RGD:13508589
G LACRT lacritin JBrowse link 27 735,639 738,355 RGD:9068941
G LARP1 La ribonucleoprotein 1, translational regulator JBrowse link 4 54,991,528 55,045,976 RGD:13508589
G MAP3K7 mitogen-activated protein kinase kinase kinase 7 JBrowse link 12 49,669,849 49,740,039 RGD:9068941
G PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 RGD:13508589
G PIM2 Pim-2 proto-oncogene, serine/threonine kinase JBrowse link X 42,072,495 42,077,741 RGD:13508589
G PINK1 PTEN induced kinase 1 JBrowse link 2 78,276,091 78,293,761 RGD:9068941
G RAB12 RAB12, member RAS oncogene family JBrowse link 7 74,752,697 74,791,872 RGD:9068941
G RUFY4 RUN and FYVE domain containing 4 JBrowse link 37 24,809,365 24,830,254 RGD:13508589
G SCOC short coiled-coil protein JBrowse link 19 2,451,678 2,494,052 RGD:9068941
G SESN1 sestrin 1 JBrowse link 12 65,958,995 66,057,369 RGD:13508589
G SESN2 sestrin 2 JBrowse link 2 72,151,464 72,168,861 RGD:13508589
G SESN3 sestrin 3 JBrowse link 21 5,827,957 5,899,540 RGD:13508589
G SIRT1 sirtuin 1 JBrowse link 4 19,188,616 19,220,031 RGD:9068941
G STING1 stimulator of interferon response cGAMP interactor 1 JBrowse link 2 34,783,947 34,792,204 RGD:13508589
G SUPT5H SPT5 homolog, DSIF elongation factor subunit JBrowse link 1 113,759,419 113,788,490 RGD:13508589
G TBK1 TANK binding kinase 1 JBrowse link 10 7,169,664 7,208,890 RGD:9068941
G TRIM13 tripartite motif containing 13 JBrowse link 22 1,877,672 1,893,097 RGD:13508589
G TSC1 TSC complex subunit 1 JBrowse link 9 51,409,307 51,459,546 RGD:9068941
G TSC2 TSC complex subunit 2 JBrowse link 6 38,865,509 38,898,977 RGD:13508589
G WAC WW domain containing adaptor with coiled-coil JBrowse link 2 17,504,949 17,588,037 RGD:9068941
positive regulation of mitophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 1 49,886,887 51,201,930 RGD:9068941
G VPS13D vacuolar protein sorting 13 homolog D JBrowse link 2 83,898,620 84,132,453 RGD:13508589
positive regulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDC37 cell division cycle 37, HSP90 cochaperone JBrowse link 20 50,727,702 50,738,197 RGD:13508589
G HDAC6 histone deacetylase 6 JBrowse link X 42,004,268 42,024,726 RGD:9068941
G HUWE1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 JBrowse link X 45,234,666 45,409,641 RGD:13508589
G PINK1 PTEN induced kinase 1 JBrowse link 2 78,276,091 78,293,761 RGD:9068941
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 1 49,886,887 51,201,930 RGD:9068941
G TOMM7 translocase of outer mitochondrial membrane 7 JBrowse link 14 36,523,707 36,532,180 RGD:9068941
positive regulation of xenophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link 9 55,855,576 55,894,915 RGD:13508589
G MAPK3 mitogen-activated protein kinase 3 JBrowse link 6 18,109,184 18,115,728 RGD:9068941
G NOD1 nucleotide binding oligomerization domain containing 1 JBrowse link 14 43,162,671 43,226,948 RGD:13508589
G NOD2 nucleotide binding oligomerization domain containing 2 JBrowse link 2 64,636,850 64,667,232 RGD:9068941
G OPTN optineurin JBrowse link 2 23,356,471 23,390,569 RGD:13508589
G RIPK2 receptor interacting serine/threonine kinase 2 JBrowse link 29 35,283,209 35,311,608 RGD:13508589
G TBK1 TANK binding kinase 1 JBrowse link 10 7,169,664 7,208,890 RGD:13508589
G TLR2 toll like receptor 2 JBrowse link 15 51,454,557 51,465,429 RGD:9068941
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG16L1 autophagy related 16 like 1 JBrowse link 25 44,761,034 44,800,033 RGD:9068941
G ATG5 autophagy related 5 JBrowse link 12 63,565,859 63,692,383 RGD:13508589
G LOC606863 immunity-related GTPase family M protein-like JBrowse link 11 506,981 523,338 RGD:9068941
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 6 12,656,469 12,698,623 RGD:13508589
protein localization to phagophore assembly site term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG13 autophagy related 13 JBrowse link 18 42,834,538 42,886,873 RGD:13508589
G ATG16L1 autophagy related 16 like 1 JBrowse link 25 44,761,034 44,800,033 RGD:9068941
G ATG9A autophagy related 9A JBrowse link 37 25,768,287 25,777,529 RGD:13508589
G MFN2 mitofusin 2 JBrowse link 2 84,284,719 84,310,715 RGD:13508589
G PACS2 phosphofurin acidic cluster sorting protein 2 JBrowse link 8 72,672,861 72,721,655 RGD:9068941
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 7 48,663,381 48,800,350 RGD:13508589
G STX17 syntaxin 17 JBrowse link 11 56,885,874 56,951,714 RGD:13508589
G TRAPPC8 trafficking protein particle complex 8 JBrowse link 7 57,665,209 57,752,959 RGD:13508589
G WDR45 WD repeat domain 45 JBrowse link X 42,221,261 42,237,535 RGD:13508589
G WDR45B WD repeat domain 45B RGD:13508589
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 9 15,115,098 15,147,893 RGD:13508589
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 6 12,656,469 12,698,623 RGD:13508589
protein targeting to lysosome involved in chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 5 11,292,219 11,296,851 RGD:13508589
G LAMP2 lysosomal associated membrane protein 2 JBrowse link X 92,405,946 92,444,527 RGD:13508589
G LOC607182 heat shock cognate 71 kDa protein pseudogene RGD:13508589
protein targeting to vacuole involved in autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 6 10,385,781 10,498,071 RGD:13508589
regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C11H9orf72 chromosome 11 C9orf72 homolog JBrowse link 11 45,664,942 45,688,777 RGD:13508589
G IFT20 intraflagellar transport 20 JBrowse link 9 42,581,117 42,587,830 RGD:13508589
G IFT88 intraflagellar transport 88 JBrowse link 25 17,414,965 17,551,405 RGD:9068941
G MTMR3 myotubularin related protein 3 JBrowse link 26 23,047,500 23,187,694 RGD:13508589
G NPRL2 NPR2 like, GATOR1 complex subunit JBrowse link 20 39,005,699 39,009,183 RGD:13508589
G NPRL3 NPR3 like, GATOR1 complex subunit JBrowse link 6 40,351,757 40,394,599 RGD:13508589
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing JBrowse link 37 16,537,095 16,620,427 RGD:9068941
G RAB1B RAB1B, member RAS oncogene family JBrowse link 18 51,026,975 51,034,356 RGD:9068941
G RNF5 ring finger protein 5 JBrowse link 12 1,571,277 1,575,151 RGD:13508589
G TBC1D12 TBC1 domain family member 12 JBrowse link 28 8,519,852 8,642,836 RGD:13508589
G TBC1D14 TBC1 domain family member 14 JBrowse link 3 58,992,743 59,097,581 RGD:13508589
G UBQLN2 ubiquilin 2 JBrowse link X 47,860,923 47,864,282 RGD:9068941
regulation of autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLEC16A C-type lectin domain containing 16A JBrowse link 6 31,560,940 31,757,100 RGD:13508589
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 6 18,252,543 18,266,033 RGD:13508589
G TBC1D25 TBC1 domain family member 25 JBrowse link X 41,782,774 41,799,083 RGD:13508589
regulation of autophagosome size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 2 81,196,355 81,215,736 RGD:13508589
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 6 18,252,543 18,266,033 RGD:13508589
regulation of autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACER2 alkaline ceramidase 2 JBrowse link 11 39,190,873 39,223,590 RGD:13508589
G ATM ATM serine/threonine kinase JBrowse link 5 24,180,129 24,297,207 RGD:13508589
G BCL2 BCL2 apoptosis regulator JBrowse link 1 13,733,849 13,900,653 RGD:9068941
G BOK BCL2 family apoptosis regulator BOK JBrowse link 25 51,449,700 51,450,967 RGD:9068941
G C11H9orf72 chromosome 11 C9orf72 homolog JBrowse link 11 45,664,942 45,688,777 RGD:9068941
G CHMP4B charged multivesicular body protein 4B JBrowse link 24 22,995,677 23,050,084 RGD:9068941
G CISD2 CDGSH iron sulfur domain 2 JBrowse link 32 24,257,909 24,274,732 RGD:13508589
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 6 18,252,543 18,266,033 RGD:9068941
G DDIT3 DNA damage inducible transcript 3 JBrowse link 10 1,606,693 1,612,410 RGD:9068941
G DEPDC5 DEP domain containing 5, GATOR1 subcomplex subunit JBrowse link 26 24,629,369 24,754,728 RGD:13508589
G DEPP1 DEPP1 autophagy regulator JBrowse link 28 2,463,770 2,465,240 RGD:13508589
G DRAM1 DNA damage regulated autophagy modulator 1 JBrowse link 15 40,759,739 40,794,666 RGD:13508589
G DRAM2 DNA damage regulated autophagy modulator 2 JBrowse link 6 40,878,094 40,898,883 RGD:13508589
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit JBrowse link 6 29,193,192 29,226,935 RGD:13508589
G FBXL2 F-box and leucine rich repeat protein 2 JBrowse link 23 3,498,253 3,606,016 RGD:9068941
G GPR137 G protein-coupled receptor 137 JBrowse link 18 52,776,857 52,781,050 RGD:13508589
G GPR137B G protein-coupled receptor 137B JBrowse link 4 3,819,338 3,864,690 RGD:13508589
G KAT8 lysine acetyltransferase 8 JBrowse link 6 17,114,528 17,125,287 RGD:13508589
G KEAP1 kelch like ECH associated protein 1 JBrowse link 20 50,651,070 50,661,178 RGD:13508589
G LAMP3 lysosomal associated membrane protein 3 JBrowse link 34 16,092,172 16,126,563 RGD:9068941
G LMX1B LIM homeobox transcription factor 1 beta JBrowse link 9 56,542,844 56,625,609 RGD:9068941
G LRRK2 leucine rich repeat kinase 2 JBrowse link 27 13,282,824 13,420,917 RGD:9068941
G MAPK15 mitogen-activated protein kinase 15 JBrowse link 13 37,317,061 37,322,792 RGD:9068941
G MAPT microtubule associated protein tau JBrowse link 9 9,572,174 9,674,082 RGD:9068941
G MFSD8 major facilitator superfamily domain containing 8 JBrowse link 19 12,905,336 13,030,901 RGD:13508589
G MTCL1 microtubule crosslinking factor 1 JBrowse link 7 74,840,271 74,967,849 RGD:13508589
G MTMR3 myotubularin related protein 3 JBrowse link 26 23,047,500 23,187,694 RGD:13508589
G MTMR4 myotubularin related protein 4 JBrowse link 9 33,110,983 33,136,843 RGD:13508589
G MTOR mechanistic target of rapamycin kinase JBrowse link 2 84,818,893 84,939,283 RGD:9068941
G NLRP6 NLR family pyrin domain containing 6 JBrowse link 18 25,433,481 25,440,703 RGD:13508589
G NUPR1 nuclear protein 1, transcriptional regulator JBrowse link 6 18,222,367 18,224,015 RGD:9068941
G PIK3R2 phosphoinositide-3-kinase regulatory subunit 2 JBrowse link 20 44,826,037 44,838,449 RGD:9068941
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha JBrowse link 2 10,464,019 10,642,365 RGD:9068941
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta JBrowse link 9 23,445,350 23,473,195 RGD:9068941
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma JBrowse link 10 1,670,076 1,680,975 RGD:9068941
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 1 49,886,887 51,201,930 RGD:9068941
G PYCARD PYD and CARD domain containing JBrowse link 6 17,049,352 17,051,348 RGD:13508589
G RAB39B RAB39B, member RAS oncogene family JBrowse link X 123,245,227 123,251,283 RGD:13508589
G RAB8A RAB8A, member RAS oncogene family JBrowse link 20 46,334,601 46,351,907 RGD:13508589
G RMC1 regulator of MON1-CCZ1 JBrowse link 7 64,802,506 64,819,383 RGD:13508589
G RPTOR regulatory associated protein of MTOR complex 1 JBrowse link 9 1,012,512 1,345,872 RGD:13508589
G RRAGB Ras related GTP binding B JBrowse link X 47,323,427 47,361,551 RGD:13508589
G RRAGC Ras related GTP binding C JBrowse link 15 3,875,193 3,892,501 RGD:13508589
G RRAGD Ras related GTP binding D JBrowse link 12 48,583,350 48,625,032 RGD:13508589
G SOGA1 suppressor of glucose, autophagy associated 1 JBrowse link 24 25,525,564 25,602,158 RGD:13508589
G SOGA3 SOGA family member 3 JBrowse link 1 66,152,749 66,207,001 RGD:13508589
G TMEM150A transmembrane protein 150A JBrowse link 17 39,479,501 39,483,802 RGD:13508589
G TMEM150B transmembrane protein 150B JBrowse link 1 102,359,774 102,368,775 RGD:13508589
G TMEM150C transmembrane protein 150C JBrowse link 32 6,465,047 6,552,492 RGD:13508589
G TP53INP1 tumor protein p53 inducible nuclear protein 1 JBrowse link 29 39,575,782 39,593,389 RGD:13508589
G TPCN2 two pore segment channel 2 JBrowse link 18 48,956,833 48,984,499 RGD:9068941
G TRIB3 tribbles pseudokinase 3 JBrowse link 24 20,450,281 20,461,141 RGD:9068941
G USP10 ubiquitin specific peptidase 10 JBrowse link 5 67,736,215 67,774,756 RGD:13508589
G USP13 ubiquitin specific peptidase 13 JBrowse link 34 13,059,099 13,175,980 RGD:9068941
G USP33 ubiquitin specific peptidase 33 JBrowse link 6 69,118,953 69,170,864 RGD:13508589
G VPS29 VPS29 retromer complex component JBrowse link 26 8,301,699 8,309,364 RGD:9068941
G WDR24 WD repeat domain 24 JBrowse link 6 39,887,968 39,891,633 RGD:13508589
G WDR41 WD repeat domain 41 JBrowse link 3 29,082,481 29,286,632 RGD:13508589
G XBP1 X-box binding protein 1 JBrowse link 26 22,162,675 22,168,149 RGD:9068941
G XPA XPA, DNA damage recognition and repair factor JBrowse link 11 54,976,978 54,996,140 RGD:13508589
G ZMPSTE24 zinc metallopeptidase STE24 JBrowse link 15 2,669,546 2,708,480 RGD:13508589
regulation of autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BNIP3L BCL2 interacting protein 3 like JBrowse link 25 31,133,512 31,149,750 RGD:9068941
G CSNK2A2 casein kinase 2 alpha 2 JBrowse link 2 58,361,328 58,441,701 RGD:9068941
G CTTN cortactin JBrowse link 18 47,932,367 47,960,732 RGD:9068941
G DNM1L dynamin 1 like JBrowse link 27 16,161,855 16,211,983 RGD:13508589
G FBXW7 F-box and WD repeat domain containing 7 JBrowse link 15 50,187,579 50,417,188 RGD:13508589
G FZD5 frizzled class receptor 5 JBrowse link 37 16,123,788 16,126,634 RGD:9068941
G GSK3A glycogen synthase kinase 3 alpha JBrowse link 1 112,129,116 112,138,714 RGD:9068941
G PARL presenilin associated rhomboid like JBrowse link 34 16,790,049 16,837,557 RGD:13508589
G SREBF1 sterol regulatory element binding transcription factor 1 JBrowse link 5 41,663,809 41,686,764 RGD:13508589
G SREBF2 sterol regulatory element binding transcription factor 2 JBrowse link 10 23,451,923 23,532,765 RGD:9068941
G USP36 ubiquitin specific peptidase 36 JBrowse link 9 2,547,316 2,587,360 RGD:9068941
G VDAC1 voltage dependent anion channel 1 JBrowse link 11 22,197,814 22,212,924 RGD:13508589
regulation of chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GFAP glial fibrillary acidic protein JBrowse link 9 18,569,868 18,579,463 RGD:9068941
regulation of macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 2 81,196,355 81,215,736 RGD:13508589
G ATP6V0A1 ATPase H+ transporting V0 subunit a1 JBrowse link 9 20,422,144 20,486,459 RGD:9068941
G HDAC6 histone deacetylase 6 JBrowse link X 42,004,268 42,024,726 RGD:9068941
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 5 52,809,792 52,855,072 RGD:13508589
G UBQLN1 ubiquilin 1 JBrowse link 1 75,767,345 75,812,278 RGD:13508589
G UBQLN2 ubiquilin 2 JBrowse link X 47,860,923 47,864,282 RGD:9068941
reticulophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DDRGK1 DDRGK domain containing 1 JBrowse link 24 18,085,865 18,098,868 RGD:9068941
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 29 4,445,668 4,544,223 RGD:13508589
G RETREG1 reticulophagy regulator 1 JBrowse link 4 86,817,391 86,921,119 RGD:9068941
G RETREG3 reticulophagy regulator family member 3 JBrowse link 9 20,363,729 20,385,580 RGD:13508589
G STING1 stimulator of interferon response cGAMP interactor 1 JBrowse link 2 34,783,947 34,792,204 RGD:13508589
G TEX264 testis expressed 264, ER-phagy receptor JBrowse link 20 37,928,952 37,959,382 RGD:13508589
G UBA5 ubiquitin like modifier activating enzyme 5 JBrowse link 23 29,645,755 29,658,587 RGD:9068941
G UFC1 ubiquitin-fold modifier conjugating enzyme 1 JBrowse link 38 21,319,039 21,339,524 RGD:9068941
G UFL1 UFM1 specific ligase 1 JBrowse link 12 54,988,200 55,023,414 RGD:9068941
G UFM1 ubiquitin fold modifier 1 JBrowse link 25 2,427,521 2,547,449 RGD:9068941
G ZNF622 zinc finger protein 622 JBrowse link 4 86,929,947 86,943,711 RGD:13508589
selective autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SQSTM1 sequestosome 1 JBrowse link 11 1,859,776 1,869,289 RGD:9068941
substrate localization to autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 6 10,385,781 10,498,071 RGD:13508589
suppression by virus of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG7 autophagy related 7 JBrowse link 20 6,916,354 7,154,849 RGD:9068941
xenophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG16L1 autophagy related 16 like 1 JBrowse link 25 44,761,034 44,800,033 RGD:9068941
G CALCOCO2 calcium binding and coiled-coil domain 2 JBrowse link 9 25,050,603 25,078,147 RGD:13508589
G LGALS8 galectin 8 JBrowse link 4 3,548,066 3,581,382 RGD:9068941
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 6 12,656,469 12,698,623 RGD:13508589

Term paths to the root
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Term Annotations click to browse term
  biological_process 16042
    cellular process 15297
      process utilizing autophagic mechanism 408
        autophagy + 408
        cytoplasm to vacuole transport by the Cvt pathway + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.