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ONTOLOGY REPORT - ANNOTATIONS


Term:process utilizing autophagic mechanism
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Accession:GO:0061919 term browser browse the term
Definition:A cellular process involving delivery of a portion of the cytoplasm to lysosomes or to the plant or fungal vacuole that does not involve direct transport through the endocytic or vacuolar protein sorting (Vps) pathways. This process typically leads to degradation of the cargo; however, it can also be used to deliver resident proteins, such as in the cytoplasm-to-vacuole targeting (Cvt) pathway.


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aggrephagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACBD5 acyl-CoA binding domain containing 5 JBrowse link 10 27,182,838 27,243,542 RGD:2290271
G ATG5 autophagy related 5 JBrowse link 6 106,184,476 106,325,820 RGD:2290271
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma JBrowse link 1 241,995,194 242,001,393 RGD:2290271
G SQSTM1 sequestosome 1 JBrowse link 5 179,806,393 179,838,078 RGD:2290271
G UBQLN1 ubiquilin 1 JBrowse link 9 83,659,968 83,707,979 RGD:2290271
G WDFY3 WD repeat and FYVE domain containing 3 JBrowse link 4 84,669,597 84,966,690 RGD:2290271
G WDR81 WD repeat domain 81 JBrowse link 17 1,716,523 1,738,599 RGD:2290271
autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC068946.2 novel protein RGD:2290271
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 11 46,396,412 46,594,055 RGD:2290271
G ATG101 autophagy related 101 JBrowse link 12 52,069,923 52,077,495 RGD:2290271
G ATG12 autophagy related 12 JBrowse link 5 115,828,200 115,841,565 RGD:2290271
G ATG13 autophagy related 13 JBrowse link 11 46,617,276 46,676,019 RGD:2290271
G ATG14 autophagy related 14 JBrowse link 14 55,366,391 55,411,830 RGD:2290271
G ATG16L1 autophagy related 16 like 1 JBrowse link 2 233,251,571 233,295,674 RGD:2290271
G ATG16L2 autophagy related 16 like 2 JBrowse link 11 72,814,407 72,845,132 RGD:2290271
G ATG2A autophagy related 2A JBrowse link 11 64,894,546 64,917,241 RGD:2290271
G ATG2B autophagy related 2B JBrowse link 14 96,279,195 96,363,341 RGD:2290271
G ATG3 autophagy related 3 JBrowse link 3 112,532,510 112,561,962 RGD:2290271
G ATG4B autophagy related 4B cysteine peptidase JBrowse link 2 241,637,659 241,673,857 RGD:9068941
G ATG5 autophagy related 5 JBrowse link 6 106,184,476 106,325,820 RGD:2290271
G ATG7 autophagy related 7 JBrowse link 3 11,272,348 11,564,652 RGD:2290271
G ATG9A autophagy related 9A JBrowse link 2 219,219,380 219,229,636 RGD:2290271
G ATG9B autophagy related 9B JBrowse link 7 151,012,209 151,028,267 RGD:2290271
G BAG3 BAG cochaperone 3 JBrowse link 10 119,651,380 119,677,819 RGD:2290271
G BECN1 beclin 1 JBrowse link 17 42,810,132 42,824,316 RGD:2290271
G BECN2 beclin 2 JBrowse link 1 241,957,767 241,959,062 RGD:2290271
G CTSD cathepsin D JBrowse link 11 1,752,755 1,763,927 RGD:9068941
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 1 109,114,106 109,206,781 RGD:2290271
G EMC6 ER membrane protein complex subunit 6 JBrowse link 17 3,668,723 3,669,669 RGD:2290271
G EPM2A EPM2A glucan phosphatase, laforin JBrowse link 6 145,382,540 145,736,023 RGD:2290271
G GABARAP GABA type A receptor-associated protein JBrowse link 17 7,240,008 7,242,449 RGD:2290271
G GABARAPL1 GABA type A receptor associated protein like 1 JBrowse link 12 10,212,877 10,223,128 RGD:2290271
G GABARAPL2 GABA type A receptor associated protein like 2 JBrowse link 16 75,566,379 75,577,881 RGD:2290271
G GABARAPL3 GABA type A receptor associated protein like 3 pseudogene JBrowse link 15 90,346,527 90,349,447 RGD:2290271
G IRGM immunity related GTPase M JBrowse link 5 150,846,521 150,902,402 RGD:2290271
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 20 34,546,823 34,560,345 RGD:2290271
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 16 87,392,336 87,404,774 RGD:2290271
G MAP1LC3B2 microtubule associated protein 1 light chain 3 beta 2 JBrowse link 12 116,559,381 116,576,606 RGD:2290271
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma JBrowse link 1 241,995,194 242,001,393 RGD:2290271
G NSFL1C NSFL1 cofactor JBrowse link 20 1,442,162 1,467,793 RGD:2290271
G PACS2 phosphofurin acidic cluster sorting protein 2 JBrowse link 14 105,300,718 105,398,147 RGD:2290271
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 18 41,955,226 42,087,830 RGD:2290271
G PSEN1 presenilin 1 JBrowse link 14 73,136,436 73,223,691 RGD:2290271
G RAB19 RAB19, member RAS oncogene family JBrowse link 7 140,403,740 140,427,974 RGD:2290271
G RAB1A RAB1A, member RAS oncogene family JBrowse link 2 65,086,854 65,130,301 RGD:2290271
G RAB1B RAB1B, member RAS oncogene family JBrowse link 11 66,268,526 66,277,492 RGD:2290271
G RAB1C RAB1C, member RAS oncogene family pseudogene JBrowse link 9 37,636,488 37,637,334 RGD:2290271
G RAB23 RAB23, member RAS oncogene family JBrowse link 6 57,186,992 57,222,314 RGD:2290271
G RAB33B RAB33B, member RAS oncogene family JBrowse link 4 139,453,232 139,476,609 RGD:2290271
G RAB43 RAB43, member RAS oncogene family JBrowse link 3 129,087,569 129,122,150 RGD:2290271
G RAB7A RAB7A, member RAS oncogene family JBrowse link 3 128,726,183 128,814,798 RGD:2290271
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 8 52,622,458 52,714,466 RGD:2290271
G RUFY4 RUN and FYVE domain containing 4 JBrowse link 2 218,034,934 218,090,584 RGD:2290271
G STING1 stimulator of interferon response cGAMP interactor 1 JBrowse link 5 139,475,533 139,482,758 RGD:2290271
G STX12 syntaxin 12 JBrowse link 1 27,773,219 27,824,443 RGD:2290271
G SYNPO2 synaptopodin 2 JBrowse link 4 118,850,681 119,061,247 RGD:2290271
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 JBrowse link 11 68,039,000 68,053,846 RGD:2290271
G TMEM41B transmembrane protein 41B JBrowse link 11 9,280,654 9,314,633 RGD:2290271
G TP53INP1 tumor protein p53 inducible nuclear protein 1 JBrowse link 8 94,925,972 94,949,378 RGD:2290271
G TP53INP2 tumor protein p53 inducible nuclear protein 2 JBrowse link 20 34,704,344 34,713,439 RGD:2290271
G TRAPPC8 trafficking protein particle complex 8 JBrowse link 18 31,829,197 31,943,128 RGD:2290271
G UBQLN1 ubiquilin 1 JBrowse link 9 83,659,968 83,707,979 RGD:2290271
G UBQLN2 ubiquilin 2 JBrowse link X 56,563,627 56,567,868 RGD:2290271
G UBXN2A UBX domain protein 2A JBrowse link 2 23,927,172 24,004,909 RGD:2290271
G UBXN2B UBX domain protein 2B JBrowse link 8 58,411,264 58,451,501 RGD:2290271
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 12 131,894,622 131,923,150 RGD:9068941
G VMP1 vacuole membrane protein 1 JBrowse link 17 59,707,654 59,842,255 RGD:2290271
G WDR45 WD repeat domain 45 JBrowse link X 49,074,433 49,101,121 RGD:2290271
G WDR45B WD repeat domain 45B JBrowse link 17 82,614,562 82,648,530 RGD:2290271
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 17 68,421,281 68,457,524 RGD:2290271
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 7 5,190,233 5,233,855 RGD:2290271
autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CHMP3 charged multivesicular body protein 3 JBrowse link 2 86,503,430 86,563,443 RGD:2290271
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 16 28,466,653 28,492,082 RGD:2290271
G EPG5 ectopic P-granules autophagy protein 5 homolog JBrowse link 18 45,800,586 45,967,339 RGD:2290271
G GABARAP GABA type A receptor-associated protein JBrowse link 17 7,240,008 7,242,449 RGD:2290271
G GABARAPL1 GABA type A receptor associated protein like 1 JBrowse link 12 10,212,877 10,223,128 RGD:2290271
G GABARAPL2 GABA type A receptor associated protein like 2 JBrowse link 16 75,566,379 75,577,881 RGD:2290271
G LAMP2 lysosomal associated membrane protein 2 JBrowse link X 120,426,148 120,469,349 RGD:2290271
G LIX1 limb and CNS expressed 1 JBrowse link 5 97,091,867 97,142,611 RGD:2290271
G LIX1L limb and CNS expressed 1 like JBrowse link 1 145,933,423 145,958,038 RGD:2290271
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 20 34,546,823 34,560,345 RGD:2290271
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 16 87,392,336 87,404,774 RGD:2290271
G MAP1LC3B2 microtubule associated protein 1 light chain 3 beta 2 JBrowse link 12 116,559,381 116,576,606 RGD:2290271
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma JBrowse link 1 241,995,194 242,001,393 RGD:2290271
G MCOLN1 mucolipin 1 JBrowse link 19 7,522,624 7,534,009 RGD:2290271
G MFSD8 major facilitator superfamily domain containing 8 JBrowse link 4 127,917,732 127,965,988 RGD:2290271
G RNF103-CHMP3 RNF103-CHMP3 readthrough JBrowse link 2 86,503,430 86,721,122 RGD:2290271
G RUBCNL rubicon like autophagy enhancer JBrowse link 13 46,334,681 46,390,042 RGD:2290271
G SNAP29 synaptosome associated protein 29 JBrowse link 22 20,859,007 20,891,214 RGD:2290271
G SNAPIN SNAP associated protein JBrowse link 1 153,658,654 153,661,852 RGD:2290271
G SNX14 sorting nexin 14 JBrowse link 6 85,505,496 85,594,156 RGD:2290271
G STX17 syntaxin 17 JBrowse link 9 99,906,654 99,974,541 RGD:2290271
G TECPR1 tectonin beta-propeller repeat containing 1 JBrowse link 7 98,214,624 98,252,235 RGD:2290271
G TSG101 tumor susceptibility 101 JBrowse link 11 18,480,311 18,526,942 RGD:2290271
G UBQLN1 ubiquilin 1 JBrowse link 9 83,659,968 83,707,979 RGD:2290271
G UVRAG UV radiation resistance associated JBrowse link 11 75,815,189 76,144,232 RGD:2290271
G VAMP7 vesicle associated membrane protein 7 JBrowse link X
Y
155,881,318
57,067,838
155,943,769
57,130,289
RGD:2290271
G VAMP8 vesicle associated membrane protein 8 JBrowse link 2 85,577,535 85,582,031 RGD:2290271
G VCP valosin containing protein JBrowse link 9 35,056,064 35,072,668 RGD:2290271
G VIPAS39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog JBrowse link 14 77,426,675 77,457,727 RGD:2290271
G VPS16 VPS16 core subunit of CORVET and HOPS complexes JBrowse link 20 2,840,697 2,866,732 RGD:2290271
G VPS33A VPS33A core subunit of CORVET and HOPS complexes JBrowse link 12 122,229,564 122,266,494 RGD:2290271
G VPS33B VPS33B late endosome and lysosome associated JBrowse link 15 90,998,416 91,022,839 RGD:2290271
G VTI1B vesicle transport through interaction with t-SNAREs 1B JBrowse link 14 67,647,085 67,674,632 RGD:2290271
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 7 5,190,233 5,233,855 RGD:2290271
autophagosome membrane docking term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG14 autophagy related 14 JBrowse link 14 55,366,391 55,411,830 RGD:2290271
G SNAP29 synaptosome associated protein 29 JBrowse link 22 20,859,007 20,891,214 RGD:2290271
G STX17 syntaxin 17 JBrowse link 9 99,906,654 99,974,541 RGD:2290271
G VAMP8 vesicle associated membrane protein 8 JBrowse link 2 85,577,535 85,582,031 RGD:2290271
autophagosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 1 16,985,958 17,011,972 RGD:2290271
G GBA glucosylceramidase beta JBrowse link 1 155,234,452 155,244,627 RGD:2290271
G PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha JBrowse link 11 17,086,575 17,207,986 RGD:9068941
G PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta JBrowse link 1 204,422,633 204,494,815 RGD:2290271
autophagosome-endosome fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RUBCNL rubicon like autophagy enhancer JBrowse link 13 46,334,681 46,390,042 RGD:2290271
autophagosome-lysosome fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 1 16,985,958 17,011,972 RGD:2290271
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 16 28,466,653 28,492,082 RGD:2290271
G RUBCNL rubicon like autophagy enhancer JBrowse link 13 46,334,681 46,390,042 RGD:2290271
autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase JBrowse link 9 130,713,881 130,887,675 RGD:2290271
G AC104389.5 novel transcript RGD:2290271
G AC231657.3 novel protein RGD:2290271
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 11 46,396,412 46,594,055 RGD:2290271
G ANXA7 annexin A7 JBrowse link 10 73,375,101 73,414,058 RGD:2290271
G ARFIP2 ADP ribosylation factor interacting protein 2 JBrowse link 11 6,476,519 6,481,331 RGD:2290271
G ARSA arylsulfatase A JBrowse link 22 50,622,754 50,628,152 RGD:2290271
G ARSB arylsulfatase B JBrowse link 5 78,777,209 78,986,087 RGD:2290271
G ATG10 autophagy related 10 JBrowse link 5 81,972,021 82,258,502 RGD:2290271
G ATG101 autophagy related 101 JBrowse link 12 52,069,923 52,077,495 RGD:2290271
G ATG12 autophagy related 12 JBrowse link 5 115,828,200 115,841,565 RGD:9068941
G ATG14 autophagy related 14 JBrowse link 14 55,366,391 55,411,830 RGD:9068941
G ATG16L2 autophagy related 16 like 2 JBrowse link 11 72,814,407 72,845,132 RGD:2290271
G ATG2A autophagy related 2A JBrowse link 11 64,894,546 64,917,241 RGD:2290271
G ATG3 autophagy related 3 JBrowse link 3 112,532,510 112,561,962 RGD:9068941
G ATG4A autophagy related 4A cysteine peptidase JBrowse link X 108,091,667 108,154,671 RGD:2290271
G ATG4B autophagy related 4B cysteine peptidase JBrowse link 2 241,637,659 241,673,857 RGD:2290271
G ATG4C autophagy related 4C cysteine peptidase JBrowse link 1 62,783,765 62,865,516 RGD:2290271
G ATG4D autophagy related 4D cysteine peptidase JBrowse link 19 10,543,897 10,553,418 RGD:2290271
G ATG5 autophagy related 5 JBrowse link 6 106,184,476 106,325,820 RGD:2290271
G ATG7 autophagy related 7 JBrowse link 3 11,272,348 11,564,652 RGD:2290271
G ATG9A autophagy related 9A JBrowse link 2 219,219,380 219,229,636 RGD:2290271
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 1 16,985,958 17,011,972 RGD:2290271
G BECN1 beclin 1 JBrowse link 17 42,810,132 42,824,316 RGD:2290271
G BECN2 beclin 2 JBrowse link 1 241,957,767 241,959,062 RGD:2290271
G C19orf12 chromosome 19 open reading frame 12 JBrowse link 19 29,698,886 29,715,789 RGD:2290271
G C9orf72 C9orf72-SMCR8 complex subunit JBrowse link 9 27,546,546 27,573,866 RGD:2290271
G CD84 CD84 molecule JBrowse link 1 160,541,094 160,579,516 RGD:2290271
G CHMP2B charged multivesicular body protein 2B JBrowse link 3 87,227,309 87,255,556 RGD:2290271
G CHMP4B charged multivesicular body protein 4B JBrowse link 20 33,811,348 33,854,366 RGD:2290271
G CLEC16A C-type lectin domain containing 16A JBrowse link 16 10,944,488 11,193,272 RGD:2290271
G CLTC clathrin heavy chain JBrowse link 17 59,619,689 59,696,956 RGD:2290271
G CTSB cathepsin B JBrowse link 8 11,842,524 11,868,118 RGD:9068941
G DAP death associated protein JBrowse link 5 10,679,230 10,761,234 RGD:2290271
G DEPP1 DEPP1 autophagy regulator JBrowse link 10 44,976,128 44,978,809 RGD:2290271
G DRAM1 DNA damage regulated autophagy modulator 1 JBrowse link 12 101,877,327 101,923,623 RGD:2290271
G DRAM2 DNA damage regulated autophagy modulator 2 JBrowse link 1 111,117,163 111,140,216 RGD:2290271
G DRD2 dopamine receptor D2 JBrowse link 11 113,409,595 113,475,398 RGD:2290271
G DRD3 dopamine receptor D3 JBrowse link 3 114,127,580 114,199,407 RGD:2290271
G EI24 EI24 autophagy associated transmembrane protein JBrowse link 11 125,569,216 125,584,684 RGD:9068941
G EPG5 ectopic P-granules autophagy protein 5 homolog JBrowse link 18 45,800,586 45,967,339 RGD:2290271
G EPM2A EPM2A glucan phosphatase, laforin JBrowse link 6 145,382,540 145,736,023 RGD:9068941
G EVA1A eva-1 homolog A, regulator of programmed cell death JBrowse link 2 75,492,318 75,569,719 RGD:2290271
G FNBP1L formin binding protein 1 like JBrowse link 1 93,448,067 93,569,671 RGD:2290271
G FOXO1 forkhead box O1 JBrowse link 13 40,555,667 40,666,641 RGD:2290271
G GABARAP GABA type A receptor-associated protein JBrowse link 17 7,240,008 7,242,449 RGD:2290271
G GABARAPL1 GABA type A receptor associated protein like 1 JBrowse link 12 10,212,877 10,223,128 RGD:2290271
G GABARAPL2 GABA type A receptor associated protein like 2 JBrowse link 16 75,566,379 75,577,881 RGD:2290271
G GBA glucosylceramidase beta JBrowse link 1 155,234,452 155,244,627 RGD:2290271
G GPR137 G protein-coupled receptor 137 JBrowse link 11 64,270,337 64,289,500 RGD:2290271
G GPR137B G protein-coupled receptor 137B JBrowse link 1 236,142,529 236,213,535 RGD:2290271
G GRAMD1A GRAM domain containing 1A JBrowse link 19 34,994,727 35,026,471 RGD:2290271
G HAP1 huntingtin associated protein 1 JBrowse link 17 41,717,739 41,734,646 RGD:2290271
G HDAC6 histone deacetylase 6 JBrowse link X 48,801,398 48,824,982 RGD:2290271
G HMGB1 high mobility group box 1 JBrowse link 13 30,456,704 30,617,597 RGD:2290271
G IFI16 interferon gamma inducible protein 16 JBrowse link 1 158,999,976 159,055,151 RGD:2290271
G IRF8 interferon regulatory factor 8 JBrowse link 16 85,899,162 85,922,609 RGD:2290271
G ITGB4 integrin subunit beta 4 JBrowse link 17 75,721,339 75,757,819 RGD:2290271
G LAMP2 lysosomal associated membrane protein 2 JBrowse link X 120,426,148 120,469,349 RGD:9068941
G LIX1 limb and CNS expressed 1 JBrowse link 5 97,091,867 97,142,611 RGD:2290271
G LIX1L limb and CNS expressed 1 like JBrowse link 1 145,933,423 145,958,038 RGD:2290271
G LRRK2 leucine rich repeat kinase 2 JBrowse link 12 40,224,890 40,369,285 RGD:2290271
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link 9 127,451,486 127,503,501 RGD:2290271
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 20 34,546,823 34,560,345 RGD:9068941
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 16 87,392,336 87,404,774 RGD:2290271
G MAP1S microtubule associated protein 1S JBrowse link 19 17,719,480 17,734,515 RGD:2290271
G NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1 JBrowse link 6 18,120,440 18,122,677 RGD:2290271
G NPC1 NPC intracellular cholesterol transporter 1 JBrowse link 18 23,506,184 23,586,506 RGD:2290271
G NRBF2 nuclear receptor binding factor 2 JBrowse link 10 63,133,247 63,155,031 RGD:2290271
G OPTN optineurin JBrowse link 10 13,100,082 13,138,308 RGD:2290271
G PARK7 Parkinsonism associated deglycase JBrowse link 1 7,961,654 7,985,505 RGD:2290271
G PHF23 PHD finger protein 23 JBrowse link 17 7,235,028 7,239,656 RGD:2290271
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 18 41,955,226 42,087,830 RGD:2290271
G PIK3CB phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta JBrowse link 3 138,652,698 138,834,928 RGD:2290271
G PLEKHM1 pleckstrin homology and RUN domain containing M1 JBrowse link 17 45,434,262 45,490,775 RGD:2290271
G PMP22 peripheral myelin protein 22 JBrowse link 17 15,229,777 15,265,326 RGD:9068941
G PSEN1 presenilin 1 JBrowse link 14 73,136,436 73,223,691 RGD:9068941
G PTPN22 protein tyrosine phosphatase non-receptor type 22 JBrowse link 1 113,813,811 113,871,761 RGD:2290271
G RAB12 RAB12, member RAS oncogene family JBrowse link 18 8,609,428 8,639,383 RGD:2290271
G RAB1A RAB1A, member RAS oncogene family JBrowse link 2 65,086,854 65,130,301 RGD:2290271
G RAB24 RAB24, member RAS oncogene family JBrowse link 5 177,301,190 177,303,744 RGD:2290271
G RAB39A RAB39A, member RAS oncogene family JBrowse link 11 107,928,448 107,963,482 RGD:2290271
G RAB39B RAB39B, member RAS oncogene family JBrowse link X 155,258,235 155,264,491 RGD:2290271
G RAB8A RAB8A, member RAS oncogene family JBrowse link 19 16,111,889 16,134,234 RGD:2290271
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 8 52,622,458 52,714,466 RGD:2290271
G RGS19 regulator of G protein signaling 19 JBrowse link 20 64,073,181 64,080,004 RGD:2290271
G RMC1 regulator of MON1-CCZ1 JBrowse link 18 23,503,470 23,531,822 RGD:2290271
G RNF166 ring finger protein 166 JBrowse link 16 88,696,499 88,706,421 RGD:2290271
G RNF185 ring finger protein 185 JBrowse link 22 31,160,182 31,207,019 RGD:2290271
G RNF41 ring finger protein 41 JBrowse link 12 56,202,179 56,221,982 RGD:2290271
G RUBCN rubicon autophagy regulator JBrowse link 3 197,668,867 197,749,727 RGD:2290271
G S100A8 S100 calcium binding protein A8 JBrowse link 1 153,390,032 153,422,583 RGD:2290271
G S100A9 S100 calcium binding protein A9 JBrowse link 1 153,357,854 153,361,023 RGD:2290271
G SBF2 SET binding factor 2 JBrowse link 11 9,778,667 10,294,207 RGD:2290271
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 JBrowse link 1 86,704,570 86,748,184 RGD:2290271
G SIRT2 sirtuin 2 JBrowse link 19 38,878,555 38,899,862 RGD:2290271
G SMCR8 SMCR8-C9orf72 complex subunit JBrowse link 17 18,315,293 18,328,056 RGD:2290271
G SQSTM1 sequestosome 1 JBrowse link 5 179,806,393 179,838,078 RGD:2290271
G SRPX sushi repeat containing protein X-linked JBrowse link X 38,149,335 38,220,924 RGD:2290271
G STK11 serine/threonine kinase 11 JBrowse link 19 1,205,778 1,228,431 RGD:2290271
G SUPT20H SPT20 homolog, SAGA complex component JBrowse link 13 37,009,312 37,059,714 RGD:2290271
G SYT11 synaptotagmin 11 JBrowse link 1 155,859,502 155,885,199 RGD:2290271
G TBC1D14 TBC1 domain family member 14 JBrowse link 4 6,909,444 7,033,118 RGD:2290271
G TBC1D17 TBC1 domain family member 17 JBrowse link 19 49,877,531 49,888,750 RGD:2290271
G TBC1D25 TBC1 domain family member 25 JBrowse link X 48,539,619 48,562,609 RGD:2290271
G TBC1D5 TBC1 domain family member 5 JBrowse link 3 17,157,162 17,742,739 RGD:2290271
G TECPR1 tectonin beta-propeller repeat containing 1 JBrowse link 7 98,214,624 98,252,235 RGD:2290271
G TECPR2 tectonin beta-propeller repeat containing 2 JBrowse link 14 102,362,941 102,502,477 RGD:2290271
G TFEB transcription factor EB JBrowse link 6 41,683,978 41,736,223 RGD:2290271
G TIGAR TP53 induced glycolysis regulatory phosphatase JBrowse link 12 4,321,213 4,360,028 RGD:2290271
G TM9SF1 transmembrane 9 superfamily member 1 JBrowse link 14 24,189,143 24,195,736 RGD:2290271
G TMBIM6 transmembrane BAX inhibitor motif containing 6 JBrowse link 12 49,741,557 49,764,934 RGD:2290271
G TMEM150B transmembrane protein 150B JBrowse link 19 55,308,869 55,334,043 RGD:2290271
G TMEM208 transmembrane protein 208 JBrowse link 16 67,227,130 67,229,278 RGD:2290271
G TMEM39A transmembrane protein 39A JBrowse link 3 119,428,949 119,463,632 RGD:2290271
G TMEM59 transmembrane protein 59 JBrowse link 1 54,026,681 54,053,573 RGD:2290271
G TOLLIP toll interacting protein JBrowse link 11 1,274,368 1,309,632 RGD:2290271
G TP53 tumor protein p53 JBrowse link 17 7,668,402 7,687,550 RGD:2290271
G TRAPPC4 trafficking protein particle complex 4 JBrowse link 11 119,018,766 119,024,134 RGD:2290271
G TRIM17 tripartite motif containing 17 JBrowse link 1 228,406,877 228,416,882 RGD:2290271
G TRIM5 tripartite motif containing 5 JBrowse link 11 5,590,906 5,685,108 RGD:2290271
G UBQLN4 ubiquilin 4 JBrowse link 1 156,033,129 156,053,798 RGD:2290271
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 12 131,894,622 131,923,150 RGD:2290271
G ULK2 unc-51 like autophagy activating kinase 2 JBrowse link 17 19,770,828 19,867,936 RGD:2290271
G ULK3 unc-51 like kinase 3 JBrowse link 15 74,836,118 74,843,166 RGD:2290271
G UMOD uromodulin JBrowse link 16 20,333,051 20,356,301 RGD:9068941
G USP10 ubiquitin specific peptidase 10 JBrowse link 16 84,699,977 84,779,922 RGD:2290271
G USP13 ubiquitin specific peptidase 13 JBrowse link 3 179,653,040 179,789,401 RGD:2290271
G UVRAG UV radiation resistance associated JBrowse link 11 75,815,189 76,144,232 RGD:2290271
G VCP valosin containing protein JBrowse link 9 35,056,064 35,072,668 RGD:2290271
G VMP1 vacuole membrane protein 1 JBrowse link 17 59,707,654 59,842,255 RGD:2290271
G VPS11 VPS11 core subunit of CORVET and HOPS complexes JBrowse link 11 119,067,792 119,081,972 RGD:2290271
G VPS13A vacuolar protein sorting 13 homolog A JBrowse link 9 77,177,353 77,421,537 RGD:2290271
G VPS18 VPS18 core subunit of CORVET and HOPS complexes JBrowse link 15 40,894,410 40,903,975 RGD:2290271
G VPS39 VPS39 subunit of HOPS complex JBrowse link 15 42,158,701 42,208,331 RGD:2290271
G VPS41 VPS41 subunit of HOPS complex JBrowse link 7 38,722,974 38,909,200 RGD:2290271
G VPS51 VPS51 subunit of GARP complex JBrowse link 11 65,096,214 65,111,862 RGD:2290271
G VTI1A vesicle transport through interaction with t-SNAREs 1A JBrowse link 10 112,446,988 112,855,368 RGD:2290271
G WDFY4 WDFY family member 4 JBrowse link 10 48,684,827 48,982,956 RGD:2290271
G WDR24 WD repeat domain 24 JBrowse link 16 684,622 690,661 RGD:2290271
G WDR41 WD repeat domain 41 JBrowse link 5 77,426,652 77,620,611 RGD:2290271
G WDR45 WD repeat domain 45 JBrowse link X 49,074,433 49,101,121 RGD:2290271
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 17 68,421,281 68,457,524 RGD:2290271
G XBP1 X-box binding protein 1 JBrowse link 22 28,794,560 28,800,572 RGD:2290271
G ZKSCAN3 zinc finger with KRAB and SCAN domains 3 JBrowse link 6 28,349,913 28,369,174 RGD:2290271
autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC068946.2 novel protein RGD:2290271
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 11 46,396,412 46,594,055 RGD:2290271
G ATG12 autophagy related 12 JBrowse link 5 115,828,200 115,841,565 RGD:2290271
G ATG13 autophagy related 13 JBrowse link 11 46,617,276 46,676,019 RGD:2290271
G ATG2A autophagy related 2A JBrowse link 11 64,894,546 64,917,241 RGD:2290271
G ATG2B autophagy related 2B JBrowse link 14 96,279,195 96,363,341 RGD:2290271
G ATG3 autophagy related 3 JBrowse link 3 112,532,510 112,561,962 RGD:2290271
G ATG5 autophagy related 5 JBrowse link 6 106,184,476 106,325,820 RGD:2290271
G ATG7 autophagy related 7 JBrowse link 3 11,272,348 11,564,652 RGD:2290271
G ATG9A autophagy related 9A JBrowse link 2 219,219,380 219,229,636 RGD:2290271
G ATG9B autophagy related 9B JBrowse link 7 151,012,209 151,028,267 RGD:2290271
G BECN1 beclin 1 JBrowse link 17 42,810,132 42,824,316 RGD:2290271
G BNIP3 BCL2 interacting protein 3 JBrowse link 10 131,967,683 131,982,013 RGD:2290271
G CAPN10 calpain 10 JBrowse link 2 240,586,734 240,599,104 RGD:9068941
G CDKN2A cyclin dependent kinase inhibitor 2A JBrowse link 9 21,967,752 21,995,324 RGD:2290271
G CISD2 CDGSH iron sulfur domain 2 JBrowse link 4 102,868,992 102,892,807 RGD:2290271
G CTSK cathepsin K JBrowse link 1 150,796,208 150,808,260 RGD:2290271
G FBXO7 F-box protein 7 JBrowse link 22 32,474,682 32,498,831 RGD:2290271
G FIS1 fission, mitochondrial 1 JBrowse link 7 101,239,472 101,245,081 RGD:2290271
G FUNDC1 FUN14 domain containing 1 JBrowse link X 44,523,639 44,542,859 RGD:2290271
G FUNDC2 FUN14 domain containing 2 JBrowse link X 155,026,844 155,060,304 RGD:2290271
G GABARAP GABA type A receptor-associated protein JBrowse link 17 7,240,008 7,242,449 RGD:2290271
G GABARAPL1 GABA type A receptor associated protein like 1 JBrowse link 12 10,212,877 10,223,128 RGD:2290271
G GABARAPL2 GABA type A receptor associated protein like 2 JBrowse link 16 75,566,379 75,577,881 RGD:2290271
G GABARAPL3 GABA type A receptor associated protein like 3 pseudogene JBrowse link 15 90,346,527 90,349,447 RGD:2290271
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 20 34,546,823 34,560,345 RGD:2290271
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 16 87,392,336 87,404,774 RGD:2290271
G MAP1LC3B2 microtubule associated protein 1 light chain 3 beta 2 JBrowse link 12 116,559,381 116,576,606 RGD:2290271
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma JBrowse link 1 241,995,194 242,001,393 RGD:2290271
G MARK2 microtubule affinity regulating kinase 2 JBrowse link 11 63,838,928 63,911,020 RGD:2290271
G PINK1 PTEN induced kinase 1 JBrowse link 1 20,633,458 20,651,511 RGD:2290271
G PPARGC1A PPARG coactivator 1 alpha JBrowse link 4 23,792,021 24,472,905 RGD:2290271
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 6 161,347,417 162,727,802 RGD:2290271
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 8 52,622,458 52,714,466 RGD:2290271
G SLC25A46 solute carrier family 25 member 46 JBrowse link 5 110,738,145 110,765,157 RGD:2290271
G SQSTM1 sequestosome 1 JBrowse link 5 179,806,393 179,838,078 RGD:2290271
G USP30 ubiquitin specific peptidase 30 JBrowse link 12 109,023,089 109,088,026 RGD:2290271
G WDR45 WD repeat domain 45 JBrowse link X 49,074,433 49,101,121 RGD:2290271
G WDR45B WD repeat domain 45B JBrowse link 17 82,614,562 82,648,530 RGD:2290271
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 17 68,421,281 68,457,524 RGD:2290271
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 7 5,190,233 5,233,855 RGD:2290271
autophagy of nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG12 autophagy related 12 JBrowse link 5 115,828,200 115,841,565 RGD:2290271
G ATG13 autophagy related 13 JBrowse link 11 46,617,276 46,676,019 RGD:2290271
G ATG2A autophagy related 2A JBrowse link 11 64,894,546 64,917,241 RGD:2290271
G ATG2B autophagy related 2B JBrowse link 14 96,279,195 96,363,341 RGD:2290271
G ATG3 autophagy related 3 JBrowse link 3 112,532,510 112,561,962 RGD:2290271
G ATG5 autophagy related 5 JBrowse link 6 106,184,476 106,325,820 RGD:2290271
G WDR45 WD repeat domain 45 JBrowse link X 49,074,433 49,101,121 RGD:2290271
G WDR45B WD repeat domain 45B JBrowse link 17 82,614,562 82,648,530 RGD:2290271
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 17 68,421,281 68,457,524 RGD:2290271
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 7 5,190,233 5,233,855 RGD:2290271
autophagy of peroxisome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACBD5 acyl-CoA binding domain containing 5 JBrowse link 10 27,182,838 27,243,542 RGD:2290271
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 18 41,955,226 42,087,830 RGD:2290271
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 JBrowse link 3 130,678,934 130,746,829 RGD:2290271
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 8 52,622,458 52,714,466 RGD:2290271
G TRAPPC8 trafficking protein particle complex 8 JBrowse link 18 31,829,197 31,943,128 RGD:2290271
chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG5 autophagy related 5 JBrowse link 6 106,184,476 106,325,820 RGD:9068941
G ATG7 autophagy related 7 JBrowse link 3 11,272,348 11,564,652 RGD:2290271
G BAG3 BAG cochaperone 3 JBrowse link 10 119,651,380 119,677,819 RGD:2290271
G HSP90AA1 heat shock protein 90 alpha family class A member 1 JBrowse link 14 102,080,742 102,139,749 RGD:2290271
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 11 123,057,489 123,062,366 RGD:2290271
G LAMP2 lysosomal associated membrane protein 2 JBrowse link X 120,426,148 120,469,349 RGD:2290271
G STUB1 STIP1 homology and U-box containing protein 1 JBrowse link 16 680,410 682,801 RGD:2290271
G SYNPO2 synaptopodin 2 JBrowse link 4 118,850,681 119,061,247 RGD:2290271
chaperone-mediated protein transport involved in chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLU clusterin JBrowse link 8 27,596,917 27,614,700 RGD:2290271
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 11 123,057,489 123,062,366 RGD:2290271
engulfment of target by autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 7 99,027,435 99,144,118 RGD:2290271
glycophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 8 52,622,458 52,714,466 RGD:2290271
G STBD1 starch binding domain 1 JBrowse link 4 76,306,026 76,311,130 RGD:2290271
induction by virus of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 JBrowse link 15 39,934,115 40,035,591 RGD:2290271
G PHB2 prohibitin 2 JBrowse link 12 6,965,327 6,970,753 RGD:2290271
late endosomal microautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 11 123,057,489 123,062,366 RGD:2290271
G VPS4A vacuolar protein sorting 4 homolog A JBrowse link 16 69,311,350 69,326,939 RGD:2290271
G VPS4B vacuolar protein sorting 4 homolog B JBrowse link 18 63,389,190 63,422,495 RGD:2290271
late nucleophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC068946.2 novel protein RGD:2290271
G ATG7 autophagy related 7 JBrowse link 3 11,272,348 11,564,652 RGD:2290271
G ATG9A autophagy related 9A JBrowse link 2 219,219,380 219,229,636 RGD:2290271
G ATG9B autophagy related 9B JBrowse link 7 151,012,209 151,028,267 RGD:2290271
lipophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AUP1 AUP1 lipid droplet regulating VLDL assembly factor JBrowse link 2 74,526,652 74,529,706 RGD:2290271
G RAB7A RAB7A, member RAS oncogene family JBrowse link 3 128,726,183 128,814,798 RGD:2290271
macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACBD5 acyl-CoA binding domain containing 5 JBrowse link 10 27,182,838 27,243,542 RGD:2290271
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 11 46,396,412 46,594,055 RGD:2290271
G ATG10 autophagy related 10 JBrowse link 5 81,972,021 82,258,502 RGD:2290271
G ATG101 autophagy related 101 JBrowse link 12 52,069,923 52,077,495 RGD:2290271
G ATG12 autophagy related 12 JBrowse link 5 115,828,200 115,841,565 RGD:2290271
G ATG13 autophagy related 13 JBrowse link 11 46,617,276 46,676,019 RGD:2290271
G ATG14 autophagy related 14 JBrowse link 14 55,366,391 55,411,830 RGD:2290271
G ATG16L1 autophagy related 16 like 1 JBrowse link 2 233,251,571 233,295,674 RGD:2290271
G ATG3 autophagy related 3 JBrowse link 3 112,532,510 112,561,962 RGD:2290271
G ATG4B autophagy related 4B cysteine peptidase JBrowse link 2 241,637,659 241,673,857 RGD:2290271
G ATG5 autophagy related 5 JBrowse link 6 106,184,476 106,325,820 RGD:2290271
G ATG7 autophagy related 7 JBrowse link 3 11,272,348 11,564,652 RGD:2290271
G BECN1 beclin 1 JBrowse link 17 42,810,132 42,824,316 RGD:2290271
G CHMP2A charged multivesicular body protein 2A JBrowse link 19 58,551,566 58,555,624 RGD:2290271
G CHMP2B charged multivesicular body protein 2B JBrowse link 3 87,227,309 87,255,556 RGD:2290271
G CHMP3 charged multivesicular body protein 3 JBrowse link 2 86,503,430 86,563,443 RGD:2290271
G CHMP4A charged multivesicular body protein 4A JBrowse link 14 24,209,615 24,213,488 RGD:2290271
G CHMP4B charged multivesicular body protein 4B JBrowse link 20 33,811,348 33,854,366 RGD:2290271
G CHMP4C charged multivesicular body protein 4C JBrowse link 8 81,732,448 81,759,515 RGD:2290271
G CHMP6 charged multivesicular body protein 6 JBrowse link 17 80,991,841 81,000,133 RGD:2290271
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 16 28,466,653 28,492,082 RGD:9068941
G CSNK2A1 casein kinase 2 alpha 1 JBrowse link 20 472,498 543,790 RGD:2290271
G CSNK2A2 casein kinase 2 alpha 2 JBrowse link 16 58,157,907 58,198,106 RGD:2290271
G CSNK2B casein kinase 2 beta JBrowse link 6 31,665,880 31,670,070 RGD:2290271
G DYNLL1 dynein light chain LC8-type 1 JBrowse link 12 120,469,842 120,498,493 RGD:2290271
G DYNLL2 dynein light chain LC8-type 2 JBrowse link 17 58,083,419 58,095,542 RGD:2290271
G EI24 EI24 autophagy associated transmembrane protein JBrowse link 11 125,569,216 125,584,684 RGD:2290271
G FUNDC1 FUN14 domain containing 1 JBrowse link X 44,523,639 44,542,859 RGD:2290271
G GABARAP GABA type A receptor-associated protein JBrowse link 17 7,240,008 7,242,449 RGD:2290271
G GABARAPL1 GABA type A receptor associated protein like 1 JBrowse link 12 10,212,877 10,223,128 RGD:2290271
G GABARAPL2 GABA type A receptor associated protein like 2 JBrowse link 16 75,566,379 75,577,881 RGD:2290271
G GABARAPL3 GABA type A receptor associated protein like 3 pseudogene JBrowse link 15 90,346,527 90,349,447 RGD:2290271
G HDAC10 histone deacetylase 10 JBrowse link 22 50,245,183 50,251,265 RGD:2290271
G HGS hepatocyte growth factor-regulated tyrosine kinase substrate JBrowse link 17 81,684,011 81,702,121 RGD:2290271
G ILRUN inflammation and lipid regulator with UBA-like and NBR1-like domains JBrowse link 6 34,587,288 34,696,767 RGD:2290271
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 20 34,546,823 34,560,345 RGD:2290271
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 16 87,392,336 87,404,774 RGD:2290271
G MAP1LC3B2 microtubule associated protein 1 light chain 3 beta 2 JBrowse link 12 116,559,381 116,576,606 RGD:2290271
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma JBrowse link 1 241,995,194 242,001,393 RGD:2290271
G MFN1 mitofusin 1 JBrowse link 3 179,347,709 179,394,936 RGD:2290271
G MFN2 mitofusin 2 JBrowse link 1 11,980,181 12,013,515 RGD:2290271
G MTERF3 mitochondrial transcription termination factor 3 JBrowse link 8 96,239,398 96,261,613 RGD:2290271
G MTMR14 myotubularin related protein 14 JBrowse link 3 9,649,465 9,702,393 RGD:2290271
G MTMR3 myotubularin related protein 3 JBrowse link 22 29,883,169 30,030,868 RGD:2290271
G MVB12A multivesicular body subunit 12A JBrowse link 19 17,405,741 17,425,332 RGD:2290271
G NBR1 NBR1 autophagy cargo receptor JBrowse link 17 43,170,310 43,211,688 RGD:2290271
G PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase JBrowse link 12 132,710,842 132,722,734 RGD:2290271
G PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha JBrowse link 11 17,086,575 17,207,986 RGD:9068941
G PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta JBrowse link 1 204,422,633 204,494,815 RGD:9068941
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 18 41,955,226 42,087,830 RGD:2290271
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 JBrowse link 3 130,678,934 130,746,829 RGD:2290271
G PINK1 PTEN induced kinase 1 JBrowse link 1 20,633,458 20,651,511 RGD:2290271
G PLAA phospholipase A2 activating protein JBrowse link 9 26,903,372 26,947,473 RGD:2290271
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 5 40,759,379 40,798,195 RGD:2290271
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 1 56,645,314 56,715,335 RGD:2290271
G PRKAB1 protein kinase AMP-activated non-catalytic subunit beta 1 JBrowse link 12 119,667,864 119,681,624 RGD:2290271
G PRKAB2 protein kinase AMP-activated non-catalytic subunit beta 2 JBrowse link 1 147,155,106 147,173,366 RGD:2290271
G PRKAG1 protein kinase AMP-activated non-catalytic subunit gamma 1 JBrowse link 12 49,002,272 49,018,975 RGD:2290271
G PRKAG2 protein kinase AMP-activated non-catalytic subunit gamma 2 JBrowse link 7 151,556,114 151,877,115 RGD:2290271
G PRKAG3 protein kinase AMP-activated non-catalytic subunit gamma 3 JBrowse link 2 218,819,949 218,831,803 RGD:2290271
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 6 161,347,417 162,727,802 RGD:2290271
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 8 52,622,458 52,714,466 RGD:2290271
G RNF103-CHMP3 RNF103-CHMP3 readthrough JBrowse link 2 86,503,430 86,721,122 RGD:2290271
G SNF8 SNF8 subunit of ESCRT-II JBrowse link 17 48,929,316 48,944,842 RGD:2290271
G SQSTM1 sequestosome 1 JBrowse link 5 179,806,393 179,838,078 RGD:2290271
G SRC SRC proto-oncogene, non-receptor tyrosine kinase JBrowse link 20 37,344,685 37,406,050 RGD:2290271
G STAM signal transducing adaptor molecule JBrowse link 10 17,644,150 17,716,824 RGD:2290271
G STAM2 signal transducing adaptor molecule 2 JBrowse link 2 152,116,801 152,175,777 RGD:2290271
G TBC1D5 TBC1 domain family member 5 JBrowse link 3 17,157,162 17,742,739 RGD:2290271
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 JBrowse link 11 68,039,000 68,053,846 RGD:2290271
G TMEM74 transmembrane protein 74 JBrowse link 8 108,606,850 108,787,594 RGD:2290271
G TOMM20 translocase of outer mitochondrial membrane 20 JBrowse link 1 235,109,341 235,128,837 RGD:2290271
G TOMM22 translocase of outer mitochondrial membrane 22 JBrowse link 22 38,681,957 38,685,421 RGD:2290271
G TOMM40 translocase of outer mitochondrial membrane 40 JBrowse link 19 44,891,220 44,903,689 RGD:2290271
G TOMM5 translocase of outer mitochondrial membrane 5 JBrowse link 9 37,588,413 37,592,639 RGD:2290271
G TOMM6 translocase of outer mitochondrial membrane 6 JBrowse link 6 41,787,694 41,789,895 RGD:2290271
G TOMM7 translocase of outer mitochondrial membrane 7 JBrowse link 7 22,812,974 22,822,849 RGD:2290271
G TOMM70 translocase of outer mitochondrial membrane 70 JBrowse link 3 100,363,431 100,401,089 RGD:2290271
G TP53INP2 tumor protein p53 inducible nuclear protein 2 JBrowse link 20 34,704,344 34,713,439 RGD:9068941
G TSG101 tumor susceptibility 101 JBrowse link 11 18,480,311 18,526,942 RGD:2290271
G UBQLN1 ubiquilin 1 JBrowse link 9 83,659,968 83,707,979 RGD:2290271
G UBXN6 UBX domain protein 6 JBrowse link 19 4,445,006 4,458,759 RGD:2290271
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 12 131,894,622 131,923,150 RGD:2290271
G VCP valosin containing protein JBrowse link 9 35,056,064 35,072,668 RGD:2290271
G VDAC1 voltage dependent anion channel 1 JBrowse link 5 133,971,871 134,070,987 RGD:2290271
G VPS25 vacuolar protein sorting 25 homolog JBrowse link 17 42,773,449 42,779,599 RGD:2290271
G VPS28 VPS28 subunit of ESCRT-I JBrowse link 8 144,423,601 144,428,563 RGD:2290271
G VPS36 vacuolar protein sorting 36 homolog JBrowse link 13 52,412,602 52,450,634 RGD:2290271
G VPS37A VPS37A subunit of ESCRT-I JBrowse link 8 17,246,892 17,333,455 RGD:2290271
G VPS37B VPS37B subunit of ESCRT-I JBrowse link 12 122,865,330 122,896,143 RGD:2290271
G VPS37C VPS37C subunit of ESCRT-I JBrowse link 11 61,130,257 61,161,426 RGD:2290271
G VPS37D VPS37D subunit of ESCRT-I JBrowse link 7 73,665,346 73,672,110 RGD:2290271
G VPS4A vacuolar protein sorting 4 homolog A JBrowse link 16 69,311,350 69,326,939 RGD:2290271
G VPS4B vacuolar protein sorting 4 homolog B JBrowse link 18 63,389,190 63,422,495 RGD:2290271
G VTA1 vesicle trafficking 1 JBrowse link 6 142,147,162 142,224,685 RGD:2290271
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 17 68,421,281 68,457,524 RGD:2290271
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 7 5,190,233 5,233,855 RGD:2290271
G YOD1 YOD1 deubiquitinase JBrowse link 1 207,043,849 207,052,980 RGD:2290271
G ZFYVE1 zinc finger FYVE-type containing 1 JBrowse link 14 72,969,445 73,027,136 RGD:2290271
mitophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 11 46,396,412 46,594,055 RGD:2290271
G ATG13 autophagy related 13 JBrowse link 11 46,617,276 46,676,019 RGD:2290271
G ATG14 autophagy related 14 JBrowse link 14 55,366,391 55,411,830 RGD:2290271
G BECN1 beclin 1 JBrowse link 17 42,810,132 42,824,316 RGD:2290271
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 16 87,392,336 87,404,774 RGD:2290271
G PHB2 prohibitin 2 JBrowse link 12 6,965,327 6,970,753 RGD:2290271
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 6 161,347,417 162,727,802 RGD:2290271
G SQSTM1 sequestosome 1 JBrowse link 5 179,806,393 179,838,078 RGD:2290271
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 12 131,894,622 131,923,150 RGD:9068941
mitophagy by induced vacuole formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SPATA18 spermatogenesis associated 18 JBrowse link 4 52,051,304 52,097,299 RGD:2290271
negative regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BECN1 beclin 1 JBrowse link 17 42,810,132 42,824,316 RGD:9068941
G CHMP4A charged multivesicular body protein 4A JBrowse link 14 24,209,615 24,213,488 RGD:2290271
G CHMP4B charged multivesicular body protein 4B JBrowse link 20 33,811,348 33,854,366 RGD:2290271
G EHMT2 euchromatic histone lysine methyltransferase 2 JBrowse link 6 31,879,759 31,897,698 RGD:2290271
G FEZ1 fasciculation and elongation protein zeta 1 JBrowse link 11 125,442,881 125,496,310 RGD:2290271
G FEZ2 fasciculation and elongation protein zeta 2 JBrowse link 2 36,552,239 36,598,190 RGD:2290271
G LRRK2 leucine rich repeat kinase 2 JBrowse link 12 40,224,890 40,369,285 RGD:2290271
G MTM1 myotubularin 1 JBrowse link X 150,562,658 150,673,143 RGD:2290271
G NUPR1 nuclear protein 1, transcriptional regulator JBrowse link 16 28,532,708 28,538,974 RGD:2290271
G PHF23 PHD finger protein 23 JBrowse link 17 7,235,028 7,239,656 RGD:2290271
G PINK1 PTEN induced kinase 1 JBrowse link 1 20,633,458 20,651,511 RGD:2290271
G SCFD1 sec1 family domain containing 1 JBrowse link 14 30,622,254 30,735,850 RGD:2290271
G SEC22B SEC22 homolog B, vesicle trafficking protein JBrowse link 1 120,150,898 120,176,520 RGD:2290271
G SMCR8 SMCR8-C9orf72 complex subunit JBrowse link 17 18,315,293 18,328,056 RGD:2290271
G TMEM39A transmembrane protein 39A JBrowse link 3 119,428,949 119,463,632 RGD:2290271
negative regulation of autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLEC16A C-type lectin domain containing 16A JBrowse link 16 10,944,488 11,193,272 RGD:2290271
G PHF23 PHD finger protein 23 JBrowse link 17 7,235,028 7,239,656 RGD:2290271
G RUBCN rubicon autophagy regulator JBrowse link 3 197,668,867 197,749,727 RGD:2290271
G TMEM39A transmembrane protein 39A JBrowse link 3 119,428,949 119,463,632 RGD:2290271
G UBQLN4 ubiquilin 4 JBrowse link 1 156,033,129 156,053,798 RGD:2290271
negative regulation of autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADRA1A adrenoceptor alpha 1A JBrowse link 8 26,738,113 26,870,994 RGD:2290271
G AKT1 AKT serine/threonine kinase 1 JBrowse link 14 104,769,349 104,795,748 RGD:2290271
G BCL2 BCL2 apoptosis regulator JBrowse link 18 63,123,346 63,320,280 RGD:2290271
G BCL2L1 BCL2 like 1 JBrowse link 20 31,664,452 31,723,963 RGD:2290271
G BECN1 beclin 1 JBrowse link 17 42,810,132 42,824,316 RGD:9068941
G BMF Bcl2 modifying factor JBrowse link 15 40,087,890 40,108,879 RGD:2290271
G CPTP ceramide-1-phosphate transfer protein JBrowse link 1 1,324,757 1,328,896 RGD:2290271
G DAP death associated protein JBrowse link 5 10,679,230 10,761,234 RGD:2290271
G DAPL1 death associated protein like 1 JBrowse link 2 158,795,317 158,815,990 RGD:2290271
G EIF4E eukaryotic translation initiation factor 4E JBrowse link 4 98,871,684 98,930,637 RGD:2290271
G EIF4G1 eukaryotic translation initiation factor 4 gamma 1 JBrowse link 3 184,314,495 184,335,358 RGD:2290271
G EIF4G2 eukaryotic translation initiation factor 4 gamma 2 JBrowse link 11 10,797,046 10,809,035 RGD:2290271
G EIF4G3 eukaryotic translation initiation factor 4 gamma 3 JBrowse link 1 20,806,292 21,176,897 RGD:2290271
G FOXK1 forkhead box K1 JBrowse link 7 4,682,295 4,771,442 RGD:2290271
G FOXK2 forkhead box K2 JBrowse link 17 82,519,732 82,604,602 RGD:2290271
G GATA4 GATA binding protein 4 JBrowse link 8 11,676,931 11,760,002 RGD:2290271
G GOLGA2 golgin A2 JBrowse link 9 128,255,829 128,276,000 RGD:2290271
G HERC1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 JBrowse link 15 63,608,618 63,833,948 RGD:2290271
G HGF hepatocyte growth factor JBrowse link 7 81,699,006 81,770,438 RGD:2290271
G HTR2B 5-hydroxytryptamine receptor 2B JBrowse link 2 231,108,230 231,126,172 RGD:2290271
G IL10 interleukin 10 JBrowse link 1 206,767,602 206,772,494 RGD:2290271
G IL10RA interleukin 10 receptor subunit alpha JBrowse link 11 117,986,394 118,003,037 RGD:2290271
G IL3 interleukin 3 JBrowse link 5 132,060,655 132,063,204 RGD:9068941
G KDM4A lysine demethylase 4A JBrowse link 1 43,650,149 43,705,518 RGD:2290271
G KIF25 kinesin family member 25 JBrowse link 6 167,999,092 168,045,107 RGD:2290271
G KLHL22 kelch like family member 22 JBrowse link 22 20,441,519 20,497,305 RGD:2290271
G LEP leptin JBrowse link 7 128,241,201 128,257,629 RGD:2290271
G LEPR leptin receptor JBrowse link 1 65,420,652 65,641,559 RGD:2290271
G MCL1 MCL1 apoptosis regulator, BCL2 family member JBrowse link 1 150,574,551 150,579,738 RGD:2290271
G MET MET proto-oncogene, receptor tyrosine kinase JBrowse link 7 116,672,196 116,798,386 RGD:2290271
G MIR223 microRNA 223 JBrowse link X 66,018,870 66,018,979 RGD:9068941
G MT3 metallothionein 3 JBrowse link 16 56,589,528 56,591,085 RGD:2290271
G MTMR8 myotubularin related protein 8 JBrowse link X 64,268,081 64,395,452 RGD:2290271
G MTMR9 myotubularin related protein 9 JBrowse link 8 11,284,416 11,328,146 RGD:2290271
G MTOR mechanistic target of rapamycin kinase JBrowse link 1 11,106,535 11,273,497 RGD:2290271
G NAMPT nicotinamide phosphoribosyltransferase JBrowse link 7 106,248,298 106,284,983 RGD:2290271
G NUPR1 nuclear protein 1, transcriptional regulator JBrowse link 16 28,532,708 28,538,974 RGD:2290271
G PTK2 protein tyrosine kinase 2 JBrowse link 8 140,657,900 141,002,079 RGD:2290271
G PTPN22 protein tyrosine phosphatase non-receptor type 22 JBrowse link 1 113,813,811 113,871,761 RGD:2290271
G RASIP1 Ras interacting protein 1 JBrowse link 19 48,720,585 48,740,610 RGD:2290271
G RNF5 ring finger protein 5 JBrowse link 6 32,178,405 32,180,793 RGD:2290271
G RRAGA Ras related GTP binding A JBrowse link 9 19,049,427 19,051,025 RGD:2290271
G RUBCN rubicon autophagy regulator JBrowse link 3 197,668,867 197,749,727 RGD:2290271
G SIRT2 sirtuin 2 JBrowse link 19 38,878,555 38,899,862 RGD:2290271
G SMG1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase JBrowse link 16 18,804,858 18,926,428 RGD:2290271
G STAT3 signal transducer and activator of transcription 3 JBrowse link 17 42,313,324 42,388,502 RGD:2290271
G TAB2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 JBrowse link 6 149,217,924 149,411,613 RGD:2290271
G TAB3 TGF-beta activated kinase 1 (MAP3K7) binding protein 3 JBrowse link X 30,827,442 30,889,391 RGD:2290271
G TBC1D14 TBC1 domain family member 14 JBrowse link 4 6,909,444 7,033,118 RGD:2290271
G TLK2 tousled like kinase 2 JBrowse link 17 62,470,908 62,615,481 RGD:2290271
G TREM2 triggering receptor expressed on myeloid cells 2 JBrowse link 6 41,158,508 41,163,116 RGD:2290271
G WASHC1 WASH complex subunit 1 JBrowse link 9 14,475 30,487 RGD:2290271
G WDR6 WD repeat domain 6 JBrowse link 3 49,007,391 49,015,953 RGD:2290271
G ZKSCAN3 zinc finger with KRAB and SCAN domains 3 JBrowse link 6 28,349,913 28,369,174 RGD:2290271
negative regulation of autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PINK1 PTEN induced kinase 1 JBrowse link 1 20,633,458 20,651,511 RGD:2290271
G TSPO translocator protein JBrowse link 22 43,151,559 43,163,242 RGD:2290271
negative regulation of chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTSA cathepsin A JBrowse link 20 45,890,144 45,898,820 RGD:2290271
G SNCA synuclein alpha JBrowse link 4 89,724,099 89,838,324 RGD:2290271
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link 19 49,085,451 49,108,606 RGD:2290271
negative regulation of macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AKT1 AKT serine/threonine kinase 1 JBrowse link 14 104,769,349 104,795,748 RGD:2290271
G HMOX1 heme oxygenase 1 JBrowse link 22 35,381,096 35,394,207 RGD:2290271
G LRRK2 leucine rich repeat kinase 2 JBrowse link 12 40,224,890 40,369,285 RGD:2290271
G LZTS1 leucine zipper tumor suppressor 1 JBrowse link 8 20,246,165 20,303,963 RGD:2290271
G MTOR mechanistic target of rapamycin kinase JBrowse link 1 11,106,535 11,273,497 RGD:2290271
G NPC1 NPC intracellular cholesterol transporter 1 JBrowse link 18 23,506,184 23,586,506 RGD:2290271
G NRBP2 nuclear receptor binding protein 2 JBrowse link 8 143,829,776 143,840,974 RGD:2290271
G PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha JBrowse link 3 179,148,114 179,240,093 RGD:2290271
G PINK1 PTEN induced kinase 1 JBrowse link 1 20,633,458 20,651,511 RGD:2290271
G POLDIP2 DNA polymerase delta interacting protein 2 JBrowse link 17 28,346,628 28,357,589 RGD:2290271
G QSOX1 quiescin sulfhydryl oxidase 1 JBrowse link 1 180,154,833 180,204,030 RGD:2290271
G SMCR8 SMCR8-C9orf72 complex subunit JBrowse link 17 18,315,293 18,328,056 RGD:2290271
G SMG1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase JBrowse link 16 18,804,858 18,926,428 RGD:2290271
G TSC1 TSC complex subunit 1 JBrowse link 9 132,891,349 132,945,269 RGD:2290271
G TSC2 TSC complex subunit 2 JBrowse link 16 2,047,804 2,089,491 RGD:9068941
G USP36 ubiquitin specific peptidase 36 JBrowse link 17 78,787,381 78,840,840 RGD:2290271
negative regulation of macroautophagy by TORC1 signaling term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLEC16A C-type lectin domain containing 16A JBrowse link 16 10,944,488 11,193,272 RGD:2290271
negative regulation of mitophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLEC16A C-type lectin domain containing 16A JBrowse link 16 10,944,488 11,193,272 RGD:2290271
G RNF41 ring finger protein 41 JBrowse link 12 56,202,179 56,221,982 RGD:2290271
G TIGAR TP53 induced glycolysis regulatory phosphatase JBrowse link 12 4,321,213 4,360,028 RGD:2290271
G TP53 tumor protein p53 JBrowse link 17 7,668,402 7,687,550 RGD:2290271
G TSC2 TSC complex subunit 2 JBrowse link 16 2,047,804 2,089,491 RGD:2290271
G USP30 ubiquitin specific peptidase 30 JBrowse link 12 109,023,089 109,088,026 RGD:2290271
negative regulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HTRA2 HtrA serine peptidase 2 JBrowse link 2 74,529,405 74,533,556 RGD:2290271
negative regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G VPS13C vacuolar protein sorting 13 homolog C JBrowse link 15 61,852,389 62,060,465 RGD:2290271
parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HDAC6 histone deacetylase 6 JBrowse link X 48,801,398 48,824,982 RGD:2290271
G MFN2 mitofusin 2 JBrowse link 1 11,980,181 12,013,515 RGD:2290271
G OPTN optineurin JBrowse link 10 13,100,082 13,138,308 RGD:2290271
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 6 161,347,417 162,727,802 RGD:2290271
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 7 99,027,435 99,144,118 RGD:2290271
piecemeal microautophagy of the nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG13 autophagy related 13 JBrowse link 11 46,617,276 46,676,019 RGD:2290271
G ATG7 autophagy related 7 JBrowse link 3 11,272,348 11,564,652 RGD:2290271
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 8 52,622,458 52,714,466 RGD:2290271
positive regulation by symbiont of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG5 autophagy related 5 JBrowse link 6 106,184,476 106,325,820 RGD:2290271
G ATG7 autophagy related 7 JBrowse link 3 11,272,348 11,564,652 RGD:2290271
G IRGM immunity related GTPase M JBrowse link 5 150,846,521 150,902,402 RGD:2290271
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 12 131,894,622 131,923,150 RGD:2290271
G ULK2 unc-51 like autophagy activating kinase 2 JBrowse link 17 19,770,828 19,867,936 RGD:2290271
positive regulation of aggrephagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BAG3 BAG cochaperone 3 JBrowse link 10 119,651,380 119,677,819 RGD:2290271
G HSPB8 heat shock protein family B (small) member 8 JBrowse link 12 119,178,931 119,194,746 RGD:2290271
G HTT huntingtin JBrowse link 4 3,074,681 3,243,960 RGD:2290271
positive regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BECN1 beclin 1 JBrowse link 17 42,810,132 42,824,316 RGD:9068941
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 1 109,114,106 109,206,781 RGD:2290271
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link 9 127,451,486 127,503,501 RGD:2290271
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha JBrowse link 10 22,534,837 22,714,578 RGD:2290271
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta JBrowse link 17 38,765,691 38,799,905 RGD:2290271
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma JBrowse link 12 57,591,188 57,603,418 RGD:2290271
G RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 JBrowse link 2 135,052,281 135,176,667 RGD:2290271
G RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 JBrowse link 1 220,148,293 220,272,453 RGD:2290271
G RALB RAS like proto-oncogene B JBrowse link 2 120,252,850 120,294,711 RGD:2290271
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 JBrowse link 1 86,704,570 86,748,184 RGD:2290271
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 12 131,894,622 131,923,150 RGD:2290271
positive regulation of autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADRB2 adrenoceptor beta 2 JBrowse link 5 148,826,611 148,828,623 RGD:2290271
G CALCOCO2 calcium binding and coiled-coil domain 2 JBrowse link 17 48,831,035 48,865,245 RGD:2290271
G CLEC16A C-type lectin domain containing 16A JBrowse link 16 10,944,488 11,193,272 RGD:2290271
G FYCO1 FYVE and coiled-coil domain autophagy adaptor 1 JBrowse link 3 45,917,903 45,995,824 RGD:2290271
G IRGM immunity related GTPase M JBrowse link 5 150,846,521 150,902,402 RGD:2290271
G SMCR8 SMCR8-C9orf72 complex subunit JBrowse link 17 18,315,293 18,328,056 RGD:2290271
G UVRAG UV radiation resistance associated JBrowse link 11 75,815,189 76,144,232 RGD:2290271
positive regulation of autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC104389.5 novel transcript RGD:2290271
G AGER advanced glycosylation end-product specific receptor JBrowse link 6 32,180,968 32,184,380 RGD:9068941
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 11 46,396,412 46,594,055 RGD:2290271
G ATG16L1 autophagy related 16 like 1 JBrowse link 2 233,251,571 233,295,674 RGD:2290271
G ATG7 autophagy related 7 JBrowse link 3 11,272,348 11,564,652 RGD:9068941
G BAD BCL2 associated agonist of cell death JBrowse link 11 64,269,828 64,284,704 RGD:2290271
G BECN1 beclin 1 JBrowse link 17 42,810,132 42,824,316 RGD:9068941
G BNIP3 BCL2 interacting protein 3 JBrowse link 10 131,967,683 131,982,013 RGD:2290271
G DAPK1 death associated protein kinase 1 JBrowse link 9 87,497,228 87,708,634 RGD:2290271
G DCN decorin JBrowse link 12 91,140,484 91,182,817 RGD:2290271
G DHRSX dehydrogenase/reductase X-linked JBrowse link X
Y
2,219,506
2,219,506
2,500,976
2,500,976
RGD:2290271
G FLCN folliculin JBrowse link 17 17,206,946 17,237,188 RGD:2290271
G FOXO1 forkhead box O1 JBrowse link 13 40,555,667 40,666,641 RGD:2290271
G FOXO3 forkhead box O3 JBrowse link 6 108,559,825 108,684,774 RGD:2290271
G GSK3A glycogen synthase kinase 3 alpha JBrowse link 19 42,230,186 42,243,330 RGD:2290271
G GSK3B glycogen synthase kinase 3 beta JBrowse link 3 119,821,321 120,095,823 RGD:2290271
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 14 61,695,513 61,748,259 RGD:9068941
G HMGB1 high mobility group box 1 JBrowse link 13 30,456,704 30,617,597 RGD:2290271
G HMGB1P1 high mobility group box 1 pseudogene 1 JBrowse link 20 57,487,941 57,489,130 RGD:2290271
G IFNG interferon gamma JBrowse link 12 68,154,768 68,159,740 RGD:2290271
G IRGM immunity related GTPase M JBrowse link 5 150,846,521 150,902,402 RGD:2290271
G KAT5 lysine acetyltransferase 5 JBrowse link 11 65,712,018 65,719,604 RGD:2290271
G LRRK2 leucine rich repeat kinase 2 JBrowse link 12 40,224,890 40,369,285 RGD:2290271
G MAP2K1 mitogen-activated protein kinase kinase 1 JBrowse link 15 66,386,912 66,491,544 RGD:9068941
G MEFV MEFV innate immuity regulator, pyrin JBrowse link 16 3,242,027 3,256,776 RGD:2290271
G MID2 midline 2 JBrowse link X 107,825,735 107,931,637 RGD:2290271
G MTDH metadherin JBrowse link 8 97,643,972 97,730,260 RGD:2290271
G NPRL2 NPR2 like, GATOR1 complex subunit JBrowse link 3 50,347,330 50,350,821 RGD:2290271
G OPTN optineurin JBrowse link 10 13,100,082 13,138,308 RGD:2290271
G ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 JBrowse link 17 39,921,041 39,927,601 RGD:9068941
G PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha JBrowse link 11 17,086,575 17,207,986 RGD:2290271
G PIK3CB phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta JBrowse link 3 138,652,698 138,834,928 RGD:2290271
G PIM2 Pim-2 proto-oncogene, serine/threonine kinase JBrowse link X 48,913,182 48,919,024 RGD:2290271
G PLEKHF1 pleckstrin homology and FYVE domain containing 1 JBrowse link 19 29,665,422 29,675,477 RGD:2290271
G PLK2 polo like kinase 2 JBrowse link 5 58,453,982 58,460,139 RGD:2290271
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 5 40,759,379 40,798,195 RGD:2290271
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 1 56,645,314 56,715,335 RGD:2290271
G PRKD1 protein kinase D1 JBrowse link 14 29,576,479 29,927,847 RGD:2290271
G RNF152 ring finger protein 152 JBrowse link 18 61,808,067 61,894,420 RGD:2290271
G ROCK1 Rho associated coiled-coil containing protein kinase 1 JBrowse link 18 20,946,906 21,111,813 RGD:2290271
G SH3BP4 SH3 domain binding protein 4 JBrowse link 2 234,952,017 235,055,714 RGD:2290271
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 JBrowse link 1 86,704,570 86,748,184 RGD:2290271
G STK11 serine/threonine kinase 11 JBrowse link 19 1,205,778 1,228,431 RGD:2290271
G SVIP small VCP interacting protein JBrowse link 11 22,812,429 22,829,865 RGD:2290271
G TFEB transcription factor EB JBrowse link 6 41,683,978 41,736,223 RGD:2290271
G TICAM1 toll like receptor adaptor molecule 1 JBrowse link 19 4,815,932 4,831,712 RGD:2290271
G TLR9 toll like receptor 9 JBrowse link 3 52,221,080 52,226,163 RGD:9068941
G TMEM59 transmembrane protein 59 JBrowse link 1 54,026,681 54,053,573 RGD:2290271
G TP53INP1 tumor protein p53 inducible nuclear protein 1 JBrowse link 8 94,925,972 94,949,378 RGD:2290271
G TP53INP2 tumor protein p53 inducible nuclear protein 2 JBrowse link 20 34,704,344 34,713,439 RGD:2290271
G TPCN1 two pore segment channel 1 JBrowse link 12 113,221,429 113,298,589 RGD:2290271
G TRIM14 tripartite motif containing 14 JBrowse link 9 98,072,014 98,119,420 RGD:2290271
G TRIM21 tripartite motif containing 21 JBrowse link 11 4,384,897 4,393,702 RGD:2290271
G TRIM22 tripartite motif containing 22 JBrowse link 11 5,689,790 5,710,863 RGD:2290271
G TRIM27 tripartite motif containing 27 JBrowse link 6 28,903,002 28,923,985 RGD:2290271
G TRIM34 tripartite motif containing 34 JBrowse link 11 5,619,944 5,644,398 RGD:2290271
G TRIM38 tripartite motif containing 38 JBrowse link 6 25,962,723 25,991,231 RGD:2290271
G TRIM5 tripartite motif containing 5 JBrowse link 11 5,590,906 5,685,108 RGD:2290271
G TRIM6 tripartite motif containing 6 JBrowse link 11 5,596,111 5,612,952 RGD:2290271
G TRIM65 tripartite motif containing 65 JBrowse link 17 75,880,379 75,897,008 RGD:2290271
G TRIM68 tripartite motif containing 68 JBrowse link 11 4,598,672 4,608,231 RGD:2290271
G TRIM8 tripartite motif containing 8 JBrowse link 10 102,644,479 102,658,319 RGD:2290271
G TRIML1 tripartite motif family like 1 JBrowse link 4 188,137,229 188,150,768 RGD:2290271
G TRIML2 tripartite motif family like 2 JBrowse link 4 188,091,255 188,109,603 RGD:2290271
G TSC2 TSC complex subunit 2 JBrowse link 16 2,047,804 2,089,491 RGD:9068941
G UFL1 UFM1 specific ligase 1 JBrowse link 6 96,521,806 96,555,276 RGD:2290271
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 12 131,894,622 131,923,150 RGD:2290271
G XBP1 X-box binding protein 1 JBrowse link 22 28,794,560 28,800,572 RGD:2290271
G ZC3H12A zinc finger CCCH-type containing 12A JBrowse link 1 37,474,518 37,484,377 RGD:2290271
positive regulation of autophagy in response to ER overload term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCL2L11 BCL2 like 11 JBrowse link 2 111,120,914 111,168,445 RGD:2290271
G BID BH3 interacting domain death agonist JBrowse link 22 17,734,138 17,774,665 RGD:9068941
G DDIT3 DNA damage inducible transcript 3 JBrowse link 12 57,516,588 57,520,517 RGD:9068941
positive regulation of autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BNIP3 BCL2 interacting protein 3 JBrowse link 10 131,967,683 131,982,013 RGD:2290271
G CAMKK2 calcium/calmodulin dependent protein kinase kinase 2 JBrowse link 12 121,237,692 121,298,308 RGD:2290271
G FBXO7 F-box protein 7 JBrowse link 22 32,474,682 32,498,831 RGD:2290271
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 14 61,695,513 61,748,259 RGD:2290271
G HTT huntingtin JBrowse link 4 3,074,681 3,243,960 RGD:2290271
G PARK7 Parkinsonism associated deglycase JBrowse link 1 7,961,654 7,985,505 RGD:2290271
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 6 161,347,417 162,727,802 RGD:2290271
positive regulation of autophagy of mitochondrion in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP5IF1 ATP synthase inhibitory factor subunit 1 JBrowse link 1 28,236,091 28,238,105 RGD:2290271
G GBA glucosylceramidase beta JBrowse link 1 155,234,452 155,244,627 RGD:2290271
G HK2 hexokinase 2 JBrowse link 2 74,834,126 74,893,359 RGD:2290271
G MUL1 mitochondrial E3 ubiquitin protein ligase 1 JBrowse link 1 20,499,448 20,508,483 RGD:2290271
G PINK1 PTEN induced kinase 1 JBrowse link 1 20,633,458 20,651,511 RGD:9068941
positive regulation of chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PLK3 polo like kinase 3 JBrowse link 1 44,799,952 44,805,995 RGD:2290271
positive regulation of lipophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADRB2 adrenoceptor beta 2 JBrowse link 5 148,826,611 148,828,623 RGD:2290271
G HTT huntingtin JBrowse link 4 3,074,681 3,243,960 RGD:2290271
G SESN2 sestrin 2 JBrowse link 1 28,259,452 28,282,491 RGD:2290271
G SPTLC1 serine palmitoyltransferase long chain base subunit 1 JBrowse link 9 92,031,141 92,115,413 RGD:2290271
G SPTLC2 serine palmitoyltransferase long chain base subunit 2 JBrowse link 14 77,505,997 77,616,663 RGD:2290271
positive regulation of macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BNIP3 BCL2 interacting protein 3 JBrowse link 10 131,967,683 131,982,013 RGD:2290271
G BNIP3L BCL2 interacting protein 3 like JBrowse link 8 26,383,054 26,413,127 RGD:2290271
G C9orf72 C9orf72-SMCR8 complex subunit JBrowse link 9 27,546,546 27,573,866 RGD:2290271
G DCN decorin JBrowse link 12 91,140,484 91,182,817 RGD:2290271
G EPM2A EPM2A glucan phosphatase, laforin JBrowse link 6 145,382,540 145,736,023 RGD:2290271
G GNAI3 G protein subunit alpha i3 JBrowse link 1 109,548,615 109,600,195 RGD:2290271
G GPSM1 G protein signaling modulator 1 JBrowse link 9 136,327,539 136,359,605 RGD:2290271
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 14 61,695,513 61,748,259 RGD:2290271
G HMOX1 heme oxygenase 1 JBrowse link 22 35,381,096 35,394,207 RGD:2290271
G IKBKG inhibitor of nuclear factor kappa B kinase regulatory subunit gamma JBrowse link X 154,541,238 154,565,046 RGD:2290271
G IL4 interleukin 4 JBrowse link 5 132,673,986 132,682,678 RGD:2290271
G KDR kinase insert domain receptor JBrowse link 4 55,078,481 55,125,595 RGD:2290271
G LACRT lacritin JBrowse link 12 54,630,811 54,634,895 RGD:2290271
G LARP1 La ribonucleoprotein 1, translational regulator JBrowse link 5 154,682,979 154,817,605 RGD:2290271
G MAP3K7 mitogen-activated protein kinase kinase kinase 7 JBrowse link 6 90,513,579 90,587,072 RGD:2290271
G PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 JBrowse link 11 117,144,284 117,178,173 RGD:2290271
G PIM2 Pim-2 proto-oncogene, serine/threonine kinase JBrowse link X 48,913,182 48,919,024 RGD:2290271
G PINK1 PTEN induced kinase 1 JBrowse link 1 20,633,458 20,651,511 RGD:2290271
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 1 56,645,314 56,715,335 RGD:2290271
G RAB12 RAB12, member RAS oncogene family JBrowse link 18 8,609,428 8,639,383 RGD:2290271
G RUFY4 RUN and FYVE domain containing 4 JBrowse link 2 218,034,934 218,090,584 RGD:2290271
G SCOC short coiled-coil protein JBrowse link 4 140,257,308 140,385,728 RGD:2290271
G SESN1 sestrin 1 JBrowse link 6 108,984,309 109,094,846 RGD:2290271
G SESN2 sestrin 2 JBrowse link 1 28,259,452 28,282,491 RGD:2290271
G SESN3 sestrin 3 JBrowse link 11 95,165,513 95,232,536 RGD:2290271
G SIRT1 sirtuin 1 JBrowse link 10 67,884,656 67,918,390 RGD:2290271
G STING1 stimulator of interferon response cGAMP interactor 1 JBrowse link 5 139,475,533 139,482,758 RGD:2290271
G SUPT5H SPT5 homolog, DSIF elongation factor subunit JBrowse link 19 39,445,546 39,476,670 RGD:2290271
G TBK1 TANK binding kinase 1 JBrowse link 12 64,452,105 64,502,114 RGD:2290271
G TRIM13 tripartite motif containing 13 JBrowse link 13 49,997,042 50,018,467 RGD:2290271
G TSC1 TSC complex subunit 1 JBrowse link 9 132,891,349 132,945,269 RGD:2290271
G TSC2 TSC complex subunit 2 JBrowse link 16 2,047,804 2,089,491 RGD:2290271
G WAC WW domain containing adaptor with coiled-coil JBrowse link 10 28,532,772 28,623,112 RGD:2290271
positive regulation of mitophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 6 161,347,417 162,727,802 RGD:9068941
G VPS13D vacuolar protein sorting 13 homolog D JBrowse link 1 12,230,030 12,512,047 RGD:2290271
positive regulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDC37 cell division cycle 37, HSP90 cochaperone JBrowse link 19 10,391,128 10,403,568 RGD:2290271
G HDAC6 histone deacetylase 6 JBrowse link X 48,801,398 48,824,982 RGD:9068941
G HUWE1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 JBrowse link X 53,532,096 53,686,723 RGD:2290271
G PINK1 PTEN induced kinase 1 JBrowse link 1 20,633,458 20,651,511 RGD:2290271
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 6 161,347,417 162,727,802 RGD:2290271
G TOMM7 translocase of outer mitochondrial membrane 7 JBrowse link 7 22,812,974 22,822,849 RGD:2290271
positive regulation of xenophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link 9 127,451,486 127,503,501 RGD:2290271
G MAPK3 mitogen-activated protein kinase 3 JBrowse link 16 30,114,105 30,123,309 RGD:2290271
G NOD1 nucleotide binding oligomerization domain containing 1 JBrowse link 7 30,424,527 30,478,866 RGD:2290271
G NOD2 nucleotide binding oligomerization domain containing 2 JBrowse link 16 50,693,587 50,733,077 RGD:9068941
G OPTN optineurin JBrowse link 10 13,100,082 13,138,308 RGD:2290271
G RIPK2 receptor interacting serine/threonine kinase 2 JBrowse link 8 89,757,816 89,791,064 RGD:2290271
G TBK1 TANK binding kinase 1 JBrowse link 12 64,452,105 64,502,114 RGD:2290271
G TLR2 toll like receptor 2 JBrowse link 4 153,684,080 153,710,643 RGD:9068941
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG16L1 autophagy related 16 like 1 JBrowse link 2 233,251,571 233,295,674 RGD:2290271
G ATG5 autophagy related 5 JBrowse link 6 106,184,476 106,325,820 RGD:2290271
G IRGM immunity related GTPase M JBrowse link 5 150,846,521 150,902,402 RGD:2290271
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 7 5,190,233 5,233,855 RGD:2290271
protein localization to phagophore assembly site term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC068946.2 novel protein RGD:2290271
G ATG13 autophagy related 13 JBrowse link 11 46,617,276 46,676,019 RGD:2290271
G ATG16L1 autophagy related 16 like 1 JBrowse link 2 233,251,571 233,295,674 RGD:2290271
G ATG9A autophagy related 9A JBrowse link 2 219,219,380 219,229,636 RGD:2290271
G ATG9B autophagy related 9B JBrowse link 7 151,012,209 151,028,267 RGD:2290271
G MFN2 mitofusin 2 JBrowse link 1 11,980,181 12,013,515 RGD:2290271
G PACS2 phosphofurin acidic cluster sorting protein 2 JBrowse link 14 105,300,718 105,398,147 RGD:2290271
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 18 41,955,226 42,087,830 RGD:2290271
G STX17 syntaxin 17 JBrowse link 9 99,906,654 99,974,541 RGD:2290271
G TRAPPC8 trafficking protein particle complex 8 JBrowse link 18 31,829,197 31,943,128 RGD:2290271
G WDR45 WD repeat domain 45 JBrowse link X 49,074,433 49,101,121 RGD:2290271
G WDR45B WD repeat domain 45B JBrowse link 17 82,614,562 82,648,530 RGD:2290271
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 17 68,421,281 68,457,524 RGD:2290271
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 7 5,190,233 5,233,855 RGD:2290271
protein targeting to lysosome involved in chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLU clusterin JBrowse link 8 27,596,917 27,614,700 RGD:2290271
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 11 123,057,489 123,062,366 RGD:2290271
G LAMP2 lysosomal associated membrane protein 2 JBrowse link X 120,426,148 120,469,349 RGD:2290271
protein targeting to vacuole involved in autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 7 99,027,435 99,144,118 RGD:2290271
regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADPRH ADP-ribosylarginine hydrolase JBrowse link 3 119,579,492 119,589,945 RGD:2290271
G C9orf72 C9orf72-SMCR8 complex subunit JBrowse link 9 27,546,546 27,573,866 RGD:2290271
G IFT20 intraflagellar transport 20 JBrowse link 17 28,328,325 28,335,489 RGD:2290271
G IFT88 intraflagellar transport 88 JBrowse link 13 20,566,446 20,691,444 RGD:2290271
G MTMR3 myotubularin related protein 3 JBrowse link 22 29,883,169 30,030,868 RGD:2290271
G NPRL2 NPR2 like, GATOR1 complex subunit JBrowse link 3 50,347,330 50,350,821 RGD:2290271
G NPRL3 NPR3 like, GATOR1 complex subunit JBrowse link 16 85,386 138,698 RGD:2290271
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing JBrowse link 2 208,266,178 208,358,747 RGD:2290271
G RAB1B RAB1B, member RAS oncogene family JBrowse link 11 66,268,526 66,277,492 RGD:2290271
G RAB5A RAB5A, member RAS oncogene family JBrowse link 3 19,947,080 19,985,175 RGD:2290271
G RNF5 ring finger protein 5 JBrowse link 6 32,178,405 32,180,793 RGD:2290271
G TBC1D12 TBC1 domain family member 12 JBrowse link 10 94,402,429 94,536,332 RGD:2290271
G TBC1D14 TBC1 domain family member 14 JBrowse link 4 6,909,444 7,033,118 RGD:2290271
G UBQLN2 ubiquilin 2 JBrowse link X 56,563,627 56,567,868 RGD:2290271
regulation of autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLEC16A C-type lectin domain containing 16A JBrowse link 16 10,944,488 11,193,272 RGD:2290271
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 16 28,466,653 28,492,082 RGD:2290271
G TBC1D25 TBC1 domain family member 25 JBrowse link X 48,539,619 48,562,609 RGD:2290271
regulation of autophagosome size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 1 16,985,958 17,011,972 RGD:2290271
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 16 28,466,653 28,492,082 RGD:9068941
regulation of autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase JBrowse link 9 130,713,881 130,887,675 RGD:2290271
G ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase JBrowse link 1 179,099,330 179,229,693 RGD:2290271
G ACER2 alkaline ceramidase 2 JBrowse link 9 19,408,927 19,455,173 RGD:2290271
G ATM ATM serine/threonine kinase JBrowse link 11 108,222,484 108,369,102 RGD:2290271
G BCL2 BCL2 apoptosis regulator JBrowse link 18 63,123,346 63,320,280 RGD:9068941
G BOK BCL2 family apoptosis regulator BOK JBrowse link 2 241,558,745 241,574,131 RGD:2290271
G C9orf72 C9orf72-SMCR8 complex subunit JBrowse link 9 27,546,546 27,573,866 RGD:2290271
G CASP1 caspase 1 JBrowse link 11 105,025,443 105,035,591 RGD:9068941
G CHMP4B charged multivesicular body protein 4B JBrowse link 20 33,811,348 33,854,366 RGD:9068941
G CISD2 CDGSH iron sulfur domain 2 JBrowse link 4 102,868,992 102,892,807 RGD:2290271
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 16 28,466,653 28,492,082 RGD:9068941
G DAPK1 death associated protein kinase 1 JBrowse link 9 87,497,228 87,708,634 RGD:2290271
G DAPK2 death associated protein kinase 2 JBrowse link 15 63,907,036 64,046,485 RGD:2290271
G DAPK3 death associated protein kinase 3 JBrowse link 19 3,958,453 3,971,099 RGD:2290271
G DDIT3 DNA damage inducible transcript 3 JBrowse link 12 57,516,588 57,520,517 RGD:2290271
G DEPDC5 DEP domain containing 5, GATOR1 subcomplex subunit JBrowse link 22 31,753,968 31,908,033 RGD:2290271
G DEPP1 DEPP1 autophagy regulator JBrowse link 10 44,976,128 44,978,809 RGD:2290271
G DRAM1 DNA damage regulated autophagy modulator 1 JBrowse link 12 101,877,327 101,923,623 RGD:2290271
G DRAM2 DNA damage regulated autophagy modulator 2 JBrowse link 1 111,117,163 111,140,216 RGD:2290271
G EP300 E1A binding protein p300 JBrowse link 22 41,092,592 41,180,077 RGD:2290271
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit JBrowse link 16 13,920,137 13,952,348 RGD:2290271
G FBXL2 F-box and leucine rich repeat protein 2 JBrowse link 3 33,277,025 33,422,698 RGD:2290271
G GPR137 G protein-coupled receptor 137 JBrowse link 11 64,270,337 64,289,500 RGD:2290271
G GPR137B G protein-coupled receptor 137B JBrowse link 1 236,142,529 236,213,535 RGD:2290271
G HDAC6 histone deacetylase 6 JBrowse link X 48,801,398 48,824,982 RGD:2290271
G HSPB1 heat shock protein family B (small) member 1 JBrowse link 7 76,302,673 76,304,292 RGD:2290271
G IFI16 interferon gamma inducible protein 16 JBrowse link 1 158,999,976 159,055,151 RGD:2290271
G ITPR1 inositol 1,4,5-trisphosphate receptor type 1 JBrowse link 3 4,493,348 4,847,506 RGD:2290271
G KAT8 lysine acetyltransferase 8 JBrowse link 16 31,117,664 31,131,393 RGD:2290271
G KEAP1 kelch like ECH associated protein 1 JBrowse link 19 10,486,125 10,503,356 RGD:2290271
G LAMP3 lysosomal associated membrane protein 3 JBrowse link 3 183,122,215 183,162,761 RGD:2290271
G LMX1B LIM homeobox transcription factor 1 beta JBrowse link 9 126,613,928 126,701,032 RGD:9068941
G LRRK2 leucine rich repeat kinase 2 JBrowse link 12 40,224,890 40,369,285 RGD:2290271
G MAPK15 mitogen-activated protein kinase 15 JBrowse link 8 143,716,305 143,722,458 RGD:2290271
G MAPT microtubule associated protein tau JBrowse link 17 45,894,382 46,028,334 RGD:2290271
G MFSD8 major facilitator superfamily domain containing 8 JBrowse link 4 127,917,732 127,965,988 RGD:2290271
G MTCL1 microtubule crosslinking factor 1 JBrowse link 18 8,705,556 8,832,778 RGD:2290271
G MTMR3 myotubularin related protein 3 JBrowse link 22 29,883,169 30,030,868 RGD:2290271
G MTMR4 myotubularin related protein 4 JBrowse link 17 58,489,537 58,518,109 RGD:2290271
G MTOR mechanistic target of rapamycin kinase JBrowse link 1 11,106,535 11,273,497 RGD:9068941
G NLRP6 NLR family pyrin domain containing 6 JBrowse link 11 278,365 285,942 RGD:2290271
G NUPR1 nuclear protein 1, transcriptional regulator JBrowse link 16 28,532,708 28,538,974 RGD:2290271
G OSBPL7 oxysterol binding protein like 7 JBrowse link 17 47,807,367 47,821,822 RGD:2290271
G PIK3R2 phosphoinositide-3-kinase regulatory subunit 2 JBrowse link 19 18,153,163 18,170,532 RGD:2290271
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha JBrowse link 10 22,534,837 22,714,578 RGD:2290271
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta JBrowse link 17 38,765,691 38,799,905 RGD:2290271
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma JBrowse link 12 57,591,188 57,603,418 RGD:2290271
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 6 161,347,417 162,727,802 RGD:2290271
G PSAP prosaposin JBrowse link 10 71,816,298 71,851,251 RGD:2290271
G PYCARD PYD and CARD domain containing JBrowse link 16 31,201,486 31,202,776 RGD:2290271
G RAB39B RAB39B, member RAS oncogene family JBrowse link X 155,258,235 155,264,491 RGD:2290271
G RAB8A RAB8A, member RAS oncogene family JBrowse link 19 16,111,889 16,134,234 RGD:2290271
G RMC1 regulator of MON1-CCZ1 JBrowse link 18 23,503,470 23,531,822 RGD:2290271
G ROCK1 Rho associated coiled-coil containing protein kinase 1 JBrowse link 18 20,946,906 21,111,813 RGD:2290271
G RPTOR regulatory associated protein of MTOR complex 1 JBrowse link 17 80,544,838 80,966,368 RGD:2290271
G RRAGA Ras related GTP binding A JBrowse link 9 19,049,427 19,051,025 RGD:2290271
G RRAGB Ras related GTP binding B JBrowse link X 55,717,747 55,760,209 RGD:2290271
G RRAGC Ras related GTP binding C JBrowse link 1 38,838,198 38,859,772 RGD:2290271
G RRAGD Ras related GTP binding D JBrowse link 6 89,363,509 89,412,273 RGD:2290271
G SMCR8 SMCR8-C9orf72 complex subunit JBrowse link 17 18,315,293 18,328,056 RGD:2290271
G SOGA1 suppressor of glucose, autophagy associated 1 JBrowse link 20 36,777,442 36,863,538 RGD:2290271
G SOGA3 SOGA family member 3 JBrowse link 6 127,438,406 127,519,024 RGD:2290271
G TMEM150A transmembrane protein 150A JBrowse link 2 85,598,547 85,602,699 RGD:2290271
G TMEM150B transmembrane protein 150B JBrowse link 19 55,308,869 55,334,043 RGD:2290271
G TMEM150C transmembrane protein 150C JBrowse link 4 82,483,176 82,562,253 RGD:2290271
G TPCN2 two pore segment channel 2 JBrowse link 11 69,048,932 69,090,597 RGD:2290271
G TRIB3 tribbles pseudokinase 3 JBrowse link 20 380,629 397,559 RGD:2290271
G USP10 ubiquitin specific peptidase 10 JBrowse link 16 84,699,977 84,779,922 RGD:2290271
G USP13 ubiquitin specific peptidase 13 JBrowse link 3 179,653,040 179,789,401 RGD:2290271
G USP33 ubiquitin specific peptidase 33 JBrowse link 1 77,695,987 77,759,852 RGD:2290271
G VPS29 VPS29 retromer complex component JBrowse link 12 110,491,083 110,502,140 RGD:2290271
G WDR24 WD repeat domain 24 JBrowse link 16 684,622 690,661 RGD:2290271
G WDR41 WD repeat domain 41 JBrowse link 5 77,426,652 77,620,611 RGD:2290271
G XBP1 X-box binding protein 1 JBrowse link 22 28,794,560 28,800,572 RGD:2290271
G XPA XPA, DNA damage recognition and repair factor JBrowse link 9 97,654,398 97,697,409 RGD:2290271
G ZMPSTE24 zinc metallopeptidase STE24 JBrowse link 1 40,258,078 40,294,180 RGD:2290271
regulation of autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 1 16,985,958 17,011,972 RGD:2290271
G BNIP3L BCL2 interacting protein 3 like JBrowse link 8 26,383,054 26,413,127 RGD:2290271
G CSNK2A2 casein kinase 2 alpha 2 JBrowse link 16 58,157,907 58,198,106 RGD:2290271
G CTTN cortactin JBrowse link 11 70,398,506 70,436,584 RGD:2290271
G DNM1L dynamin 1 like JBrowse link 12 32,679,200 32,745,650 RGD:2290271
G FBXW7 F-box and WD repeat domain containing 7 JBrowse link 4 152,320,544 152,536,873 RGD:2290271
G FZD5 frizzled class receptor 5 JBrowse link 2 207,753,889 207,769,906 RGD:2290271
G GSK3A glycogen synthase kinase 3 alpha JBrowse link 19 42,230,186 42,243,330 RGD:2290271
G HAX1 HCLS1 associated protein X-1 JBrowse link 1 154,272,629 154,275,875 RGD:2290271
G HDAC6 histone deacetylase 6 JBrowse link X 48,801,398 48,824,982 RGD:2290271
G HTRA2 HtrA serine peptidase 2 JBrowse link 2 74,529,405 74,533,556 RGD:2290271
G PARL presenilin associated rhomboid like JBrowse link 3 183,826,488 183,884,901 RGD:2290271
G PINK1 PTEN induced kinase 1 JBrowse link 1 20,633,458 20,651,511 RGD:2290271
G SREBF1 sterol regulatory element binding transcription factor 1 JBrowse link 17 17,811,334 17,837,017 RGD:2290271
G SREBF2 sterol regulatory element binding transcription factor 2 JBrowse link 22 41,833,105 41,907,308 RGD:2290271
G USP36 ubiquitin specific peptidase 36 JBrowse link 17 78,787,381 78,840,840 RGD:2290271
G VDAC1 voltage dependent anion channel 1 JBrowse link 5 133,971,871 134,070,987 RGD:2290271
regulation of chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 1 16,985,958 17,011,972 RGD:2290271
G CTSA cathepsin A JBrowse link 20 45,890,144 45,898,820 RGD:2290271
G EEF1A1 eukaryotic translation elongation factor 1 alpha 1 JBrowse link 6 73,515,750 73,521,032 RGD:2290271
G EEF1A2 eukaryotic translation elongation factor 1 alpha 2 JBrowse link 20 63,488,014 63,499,083 RGD:2290271
G GFAP glial fibrillary acidic protein JBrowse link 17 44,903,159 44,915,552 RGD:2290271
regulation of macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG101 autophagy related 101 JBrowse link 12 52,069,923 52,077,495 RGD:2290271
G ATG13 autophagy related 13 JBrowse link 11 46,617,276 46,676,019 RGD:2290271
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 1 16,985,958 17,011,972 RGD:2290271
G ATP6V0A1 ATPase H+ transporting V0 subunit a1 JBrowse link 17 42,458,874 42,522,579 RGD:2290271
G ATP6V0A2 ATPase H+ transporting V0 subunit a2 JBrowse link 12 123,712,353 123,761,755 RGD:2290271
G ATP6V0B ATPase H+ transporting V0 subunit b JBrowse link 1 43,974,960 43,978,295 RGD:2290271
G ATP6V0C ATPase H+ transporting V0 subunit c JBrowse link 16 2,513,726 2,520,223 RGD:2290271
G ATP6V0D1 ATPase H+ transporting V0 subunit d1 JBrowse link 16 67,438,019 67,481,157 RGD:2290271
G ATP6V0D2 ATPase H+ transporting V0 subunit d2 JBrowse link 8 86,098,910 86,154,225 RGD:2290271
G ATP6V0E1 ATPase H+ transporting V0 subunit e1 JBrowse link 5 172,983,771 173,035,445 RGD:2290271
G ATP6V0E2 ATPase H+ transporting V0 subunit e2 JBrowse link 7 149,872,964 149,880,713 RGD:2290271
G ATP6V1A ATPase H+ transporting V1 subunit A JBrowse link 3 113,747,035 113,812,056 RGD:2290271
G ATP6V1B1 ATPase H+ transporting V1 subunit B1 JBrowse link 2 70,935,900 70,965,431 RGD:2290271
G ATP6V1B2 ATPase H+ transporting V1 subunit B2 JBrowse link 8 20,197,375 20,226,852 RGD:2290271
G ATP6V1C1 ATPase H+ transporting V1 subunit C1 JBrowse link 8 103,021,083 103,073,051 RGD:2290271
G ATP6V1C2 ATPase H+ transporting V1 subunit C2 JBrowse link 2 10,720,973 10,785,110 RGD:2290271
G ATP6V1D ATPase H+ transporting V1 subunit D JBrowse link 14 67,337,872 67,359,804 RGD:2290271
G ATP6V1E1 ATPase H+ transporting V1 subunit E1 JBrowse link 22 17,592,136 17,628,822 RGD:2290271
G ATP6V1E2 ATPase H+ transporting V1 subunit E2 JBrowse link 2 46,511,847 46,542,577 RGD:2290271
G ATP6V1G1 ATPase H+ transporting V1 subunit G1 JBrowse link 9 114,587,769 114,598,879 RGD:2290271
G ATP6V1G2 ATPase H+ transporting V1 subunit G2 JBrowse link 6 31,544,444 31,546,742 RGD:2290271
G ATP6V1H ATPase H+ transporting V1 subunit H JBrowse link 8 53,715,543 53,843,311 RGD:2290271
G CAPN1 calpain 1 JBrowse link 11 65,181,373 65,212,006 RGD:2290271
G CAPNS1 calpain small subunit 1 JBrowse link 19 36,140,066 36,150,353 RGD:2290271
G CASP3 caspase 3 JBrowse link 4 184,627,696 184,649,475 RGD:2290271
G CDK5 cyclin dependent kinase 5 JBrowse link 7 151,053,815 151,057,897 RGD:2290271
G CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 JBrowse link 17 32,485,028 32,491,256 RGD:2290271
G ERN1 endoplasmic reticulum to nucleus signaling 1 JBrowse link 17 64,039,142 64,132,469 RGD:2290271
G EXOC1 exocyst complex component 1 JBrowse link 4 55,853,648 55,905,086 RGD:2290271
G EXOC4 exocyst complex component 4 JBrowse link 7 133,253,067 134,067,137 RGD:2290271
G EXOC7 exocyst complex component 7 JBrowse link 17 76,080,993 76,103,787 RGD:2290271
G EXOC8 exocyst complex component 8 JBrowse link 1 231,332,753 231,337,852 RGD:2290271
G GAPDH glyceraldehyde-3-phosphate dehydrogenase JBrowse link 12 6,534,517 6,538,371 RGD:2290271
G GBA glucosylceramidase beta JBrowse link 1 155,234,452 155,244,627 RGD:2290271
G HDAC6 histone deacetylase 6 JBrowse link X 48,801,398 48,824,982 RGD:2290271
G LAMTOR1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 JBrowse link 11 72,097,292 72,103,297 RGD:2290271
G LAMTOR2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 JBrowse link 1 156,054,782 156,058,506 RGD:2290271
G LAMTOR3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 JBrowse link 4 99,878,336 99,894,546 RGD:2290271
G LAMTOR4 late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 JBrowse link 7 100,140,177 100,154,212 RGD:2290271
G LAMTOR5 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 JBrowse link 1 110,401,253 110,407,924 RGD:2290271
G MAPK8 mitogen-activated protein kinase 8 JBrowse link 10 48,306,639 48,439,360 RGD:2290271
G MLST8 MTOR associated protein, LST8 homolog JBrowse link 16 2,204,628 2,209,453 RGD:2290271
G MTOR mechanistic target of rapamycin kinase JBrowse link 1 11,106,535 11,273,497 RGD:2290271
G NEDD4 NEDD4 E3 ubiquitin protein ligase JBrowse link 15 55,826,917 55,993,612 RGD:2290271
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 5 40,759,379 40,798,195 RGD:2290271
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 1 56,645,314 56,715,335 RGD:2290271
G PRKAB1 protein kinase AMP-activated non-catalytic subunit beta 1 JBrowse link 12 119,667,864 119,681,624 RGD:2290271
G PRKAB2 protein kinase AMP-activated non-catalytic subunit beta 2 JBrowse link 1 147,155,106 147,173,366 RGD:2290271
G PRKACA protein kinase cAMP-activated catalytic subunit alpha JBrowse link 19 14,091,688 14,117,762 RGD:2290271
G PRKAG1 protein kinase AMP-activated non-catalytic subunit gamma 1 JBrowse link 12 49,002,272 49,018,975 RGD:2290271
G PRKAG2 protein kinase AMP-activated non-catalytic subunit gamma 2 JBrowse link 7 151,556,114 151,877,115 RGD:2290271
G PRKAG3 protein kinase AMP-activated non-catalytic subunit gamma 3 JBrowse link 2 218,819,949 218,831,803 RGD:2290271
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 8 52,622,458 52,714,466 RGD:2290271
G RHEB Ras homolog, mTORC1 binding JBrowse link 7 151,466,012 151,519,895 RGD:2290271
G RPTOR regulatory associated protein of MTOR complex 1 JBrowse link 17 80,544,838 80,966,368 RGD:2290271
G RRAGA Ras related GTP binding A JBrowse link 9 19,049,427 19,051,025 RGD:2290271
G RRAGB Ras related GTP binding B JBrowse link X 55,717,747 55,760,209 RGD:2290271
G RRAGC Ras related GTP binding C JBrowse link 1 38,838,198 38,859,772 RGD:2290271
G RRAGD Ras related GTP binding D JBrowse link 6 89,363,509 89,412,273 RGD:2290271
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 JBrowse link 1 86,704,570 86,748,184 RGD:2290271
G SLC38A9 solute carrier family 38 member 9 JBrowse link 5 55,625,845 55,712,343 RGD:2290271
G SNX32 sorting nexin 32 JBrowse link 11 65,833,640 65,855,169 RGD:2290271
G SNX5 sorting nexin 5 JBrowse link 20 17,941,600 17,968,794 RGD:2290271
G SNX6 sorting nexin 6 JBrowse link 14 34,561,093 34,630,148 RGD:2290271
G UBQLN1 ubiquilin 1 JBrowse link 9 83,659,968 83,707,979 RGD:2290271
G UBQLN2 ubiquilin 2 JBrowse link X 56,563,627 56,567,868 RGD:2290271
G UCHL1 ubiquitin C-terminal hydrolase L1 JBrowse link 4 41,256,928 41,268,455 RGD:2290271
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 12 131,894,622 131,923,150 RGD:2290271
G VPS26A VPS26, retromer complex component A JBrowse link 10 69,124,153 69,174,416 RGD:2290271
G VPS26B VPS26, retromer complex component B JBrowse link 11 134,224,664 134,247,788 RGD:2290271
G VPS35 VPS35 retromer complex component JBrowse link 16 46,656,132 46,689,194 RGD:2290271
reticulophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DDRGK1 DDRGK domain containing 1 JBrowse link 20 3,190,350 3,204,682 RGD:2290271
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 8 52,622,458 52,714,466 RGD:2290271
G RETREG1 reticulophagy regulator 1 JBrowse link 5 16,473,038 16,617,096 RGD:2290271
G RETREG3 reticulophagy regulator family member 3 JBrowse link 17 42,579,508 42,609,427 RGD:2290271
G STING1 stimulator of interferon response cGAMP interactor 1 JBrowse link 5 139,475,533 139,482,758 RGD:2290271
G TEX264 testis expressed 264, ER-phagy receptor JBrowse link 3 51,671,175 51,704,323 RGD:2290271
G UBA5 ubiquitin like modifier activating enzyme 5 JBrowse link 3 132,654,446 132,679,794 RGD:2290271
G UFC1 ubiquitin-fold modifier conjugating enzyme 1 JBrowse link 1 161,132,703 161,158,856 RGD:2290271
G UFL1 UFM1 specific ligase 1 JBrowse link 6 96,521,806 96,555,276 RGD:2290271
G UFM1 ubiquitin fold modifier 1 JBrowse link 13 38,349,851 38,363,619 RGD:2290271
selective autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KLHL3 kelch like family member 3 JBrowse link 5 137,617,500 137,736,089 RGD:2290271
G SQSTM1 sequestosome 1 JBrowse link 5 179,806,393 179,838,078 RGD:2290271
substrate localization to autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 7 99,027,435 99,144,118 RGD:2290271
suppression by virus of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG7 autophagy related 7 JBrowse link 3 11,272,348 11,564,652 RGD:2290271
xenophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG16L1 autophagy related 16 like 1 JBrowse link 2 233,251,571 233,295,674 RGD:2290271
G CALCOCO2 calcium binding and coiled-coil domain 2 JBrowse link 17 48,831,035 48,865,245 RGD:2290271
G LGALS8 galectin 8 JBrowse link 1 236,518,214 236,552,981 RGD:2290271
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 7 5,190,233 5,233,855 RGD:2290271

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18542
    cellular process 17553
      process utilizing autophagic mechanism 560
        autophagy + 560
        cytoplasm to vacuole transport by the Cvt pathway + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.