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ONTOLOGY REPORT - ANNOTATIONS


Term:process utilizing autophagic mechanism
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Accession:GO:0061919 term browser browse the term
Definition:A cellular process involving delivery of a portion of the cytoplasm to lysosomes or to the plant or fungal vacuole that does not involve direct transport through the endocytic or vacuolar protein sorting (Vps) pathways. This process typically leads to degradation of the cargo; however, it can also be used to deliver resident proteins, such as in the cytoplasm-to-vacuole targeting (Cvt) pathway.


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aggrephagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acbd5 acyl-Coenzyme A binding domain containing 5 JBrowse link 2 23,068,166 23,114,513 RGD:9068941
G Atg5 autophagy related 5 JBrowse link 10 44,268,322 44,364,299 RGD:2290270
G Ighv1-47 immunoglobulin heavy variable 1-47 JBrowse link 12 114,991,108 114,991,401 RGD:9068941
G Sqstm1 sequestosome 1 JBrowse link 11 50,200,152 50,210,820 RGD:2290270
G Ubqln1 ubiquilin 1 JBrowse link 13 58,176,156 58,215,653 RGD:2290270
G Wdfy3 WD repeat and FYVE domain containing 3 JBrowse link 5 101,832,953 102,072,215 RGD:2290270
G Wdr81 WD repeat domain 81 JBrowse link 11 75,440,943 75,454,808 RGD:2290270
autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ambra1 autophagy/beclin 1 regulator 1 JBrowse link 2 91,730,138 91,918,849 RGD:2290270
G Atg101 autophagy related 101 JBrowse link 15 101,284,301 101,290,947 RGD:2290270
G Atg12 autophagy related 12 JBrowse link 18 46,732,417 46,741,724 RGD:2290270
G Atg13 autophagy related 13 JBrowse link 2 91,674,612 91,710,597 RGD:2290270
G Atg14 autophagy related 14 JBrowse link 14 47,540,893 47,568,434 RGD:2290270
G Atg16l1 autophagy related 16-like 1 (S. cerevisiae) JBrowse link 1 87,756,007 87,792,428 RGD:2290270
G Atg16l2 autophagy related 16-like 2 (S. cerevisiae) JBrowse link 7 101,286,325 101,302,267 RGD:2290270
G Atg2a autophagy related 2A JBrowse link 19 6,241,478 6,262,304 RGD:2290270
G Atg2b autophagy related 2B JBrowse link 12 105,613,539 105,685,297 RGD:2290270
G Atg3 autophagy related 3 JBrowse link 16 45,158,829 45,188,538 RGD:2290270
G Atg4b autophagy related 4B, cysteine peptidase JBrowse link 1 93,754,905 93,789,606 RGD:2290270
G Atg5 autophagy related 5 JBrowse link 10 44,268,322 44,364,299 RGD:2290270
G Atg7 autophagy related 7 JBrowse link 6 114,643,127 114,860,604 RGD:2290270
G Atg9a autophagy related 9A JBrowse link 1 75,180,861 75,192,010 RGD:2290270
G Atg9b autophagy related 9B JBrowse link 5 24,384,181 24,392,143 RGD:2290270
G Bag3 BCL2-associated athanogene 3 JBrowse link 7 128,523,583 128,546,981 RGD:2290270
G Becn1 beclin 1, autophagy related JBrowse link 11 101,288,258 101,302,286 RGD:2290270
G Becn2 beclin 2 JBrowse link 1 175,920,329 175,922,225 RGD:2290270
G Ctsd cathepsin D JBrowse link 7 142,375,910 142,387,827 RGD:2290270
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 3 108,455,679 108,536,745 RGD:2290270
G Emc6 ER membrane protein complex subunit 6 JBrowse link 11 73,175,503 73,177,042 RGD:2290270
G Epm2a epilepsy, progressive myoclonic epilepsy, type 2 gene alpha JBrowse link 10 11,342,691 11,459,664 RGD:2290270
G Gabarap gamma-aminobutyric acid receptor associated protein JBrowse link 11 69,991,370 69,994,949 RGD:2290270
G Gabarapl1 gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1 JBrowse link 6 129,533,192 129,542,331 RGD:2290270
G Gabarapl2 gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2 JBrowse link 8 111,940,703 111,952,915 RGD:2290270
G Irgm1 immunity-related GTPase family M member 1 JBrowse link 11 48,865,245 48,871,420 RGD:2290270
G Irgm2 immunity-related GTPase family M member 2 JBrowse link 11 58,214,977 58,222,783 RGD:2290270
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha JBrowse link 2 155,276,364 155,278,073 RGD:2290270
G Map1lc3b microtubule-associated protein 1 light chain 3 beta JBrowse link 8 121,590,438 121,598,760 RGD:2290270
G Nsfl1c NSFL1 (p97) cofactor (p47) JBrowse link 2 151,494,182 151,511,310 RGD:2290270
G Pacs2 phosphofurin acidic cluster sorting protein 2 JBrowse link 12 113,014,454 113,074,401 RGD:2290270
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 18 30,265,615 30,348,126 RGD:2290270
G Psen1 presenilin 1 JBrowse link 12 83,688,152 83,735,095 RGD:2290270
G Rab19 RAB19, member RAS oncogene family JBrowse link 6 39,380,709 39,390,666 RGD:2290270
G Rab1a RAB1A, member RAS oncogene family JBrowse link 11 20,201,412 20,226,856 RGD:2290270
G Rab1b RAB1B, member RAS oncogene family JBrowse link 19 5,099,207 5,106,996 RGD:2290270
G Rab23 RAB23, member RAS oncogene family JBrowse link 1 33,719,896 33,742,564 RGD:2290270
G Rab33b RAB33B, member RAS oncogene family JBrowse link 3 51,483,966 51,496,228 RGD:2290270
G Rab43 RAB43, member RAS oncogene family JBrowse link 6 87,788,853 87,812,164 RGD:2290270
G Rab7 RAB7, member RAS oncogene family JBrowse link 6 87,999,106 88,045,270 RGD:2290270
G Rb1cc1 RB1-inducible coiled-coil 1 JBrowse link 1 6,214,634 6,276,375 RGD:2290270
G Rufy4 RUN and FYVE domain containing 4 JBrowse link 1 74,124,433 74,148,230 RGD:2290270
G Sting1 stimulator of interferon response cGAMP interactor 1 JBrowse link 18 35,733,678 35,740,554 RGD:2290270
G Stx12 syntaxin 12 JBrowse link 4 132,854,064 132,884,458 RGD:2290270
G Synpo2 synaptopodin 2 JBrowse link 3 123,076,519 123,236,168 RGD:2290270
G Tmem41b transmembrane protein 41B JBrowse link 7 109,971,215 109,986,804 RGD:2290270
G Trappc8 trafficking protein particle complex 8 JBrowse link 18 20,817,211 20,896,425 RGD:2290270
G Trp53inp1 transformation related protein 53 inducible nuclear protein 1 JBrowse link 4 11,156,441 11,174,379 RGD:2290270
G Trp53inp2 transformation related protein 53 inducible nuclear protein 2 JBrowse link 2 155,381,811 155,389,847 RGD:2290270
G Ubqln1 ubiquilin 1 JBrowse link 13 58,176,156 58,215,653 RGD:2290270
G Ubqln2 ubiquilin 2 JBrowse link X 153,498,232 153,501,562 RGD:2290270
G Ubxn2a UBX domain protein 2A JBrowse link 12 4,876,814 4,907,553 RGD:2290270
G Ubxn2b UBX domain protein 2B JBrowse link 4 6,191,105 6,219,788 RGD:2290270
G Ulk1 unc-51 like kinase 1 JBrowse link 5 110,784,489 110,810,120 RGD:2290270
G Vmp1 vacuole membrane protein 1 JBrowse link 11 86,583,858 86,683,836 RGD:2290270
G Wdr45 WD repeat domain 45 JBrowse link X 7,721,987 7,728,201 RGD:2290270
G Wdr45b WD repeat domain 45B JBrowse link 11 121,327,203 121,354,447 RGD:2290270
G Wipi1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 11 109,573,521 109,611,389 RGD:2290270
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 5 142,629,533 142,669,672 RGD:2290270
autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cln3 ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) JBrowse link 7 126,571,207 126,585,817 RGD:2290270
G Epg5 ectopic P-granules autophagy protein 5 homolog (C. elegans) JBrowse link 18 77,938,409 78,037,325 RGD:2290270
G Ighv1-47 immunoglobulin heavy variable 1-47 JBrowse link 12 114,991,108 114,991,401 RGD:9068941
G Lamp2 lysosomal-associated membrane protein 2 JBrowse link X 38,399,647 38,456,460 RGD:2290270
G Lix1 limb and CNS expressed 1 JBrowse link 17 17,402,686 17,459,387 RGD:2290270
G Lix1l Lix1-like JBrowse link 3 96,601,133 96,625,352 RGD:2290270
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha JBrowse link 2 155,276,364 155,278,073 RGD:2290270
G Map1lc3b microtubule-associated protein 1 light chain 3 beta JBrowse link 8 121,590,438 121,598,760 RGD:2290270
G Mcoln1 mucolipin 1 JBrowse link 8 3,500,519 3,515,232 RGD:2290270
G Mfsd8 major facilitator superfamily domain containing 8 JBrowse link 3 40,818,065 40,846,880 RGD:2290270
G Rubcnl RUN and cysteine rich domain containing beclin 1 interacting protein like JBrowse link 14 75,015,987 75,052,537 RGD:2290270
G Snap29 synaptosomal-associated protein 29 JBrowse link 16 17,406,000 17,430,826 RGD:2290270
G Snapin SNAP-associated protein JBrowse link 3 90,488,026 90,491,013 RGD:2290270
G Snx14 sorting nexin 14 JBrowse link 9 88,376,755 88,438,929 RGD:2290270
G Stx17 syntaxin 17 JBrowse link 4 48,124,906 48,186,507 RGD:2290270
G Tecpr1 tectonin beta-propeller repeat containing 1 JBrowse link 5 144,194,442 144,223,615 RGD:2290270
G Ubqln1 ubiquilin 1 JBrowse link 13 58,176,156 58,215,653 RGD:2290270
G Uvrag UV radiation resistance associated gene JBrowse link 7 98,886,742 99,141,167 RGD:2290270
G Vamp7 vesicle-associated membrane protein 7 RGD:9068941
G Vamp8 vesicle-associated membrane protein 8 JBrowse link 6 72,385,221 72,390,667 RGD:2290270
G Vcp valosin containing protein JBrowse link 4 42,979,964 43,000,507 RGD:2290270
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog JBrowse link 12 87,238,875 87,266,378 RGD:9068941
G Vps16 VSP16 CORVET/HOPS core subunit JBrowse link 2 130,424,320 130,444,269 RGD:2290270
G Vps33a VPS33A CORVET/HOPS core subunit JBrowse link 5 123,528,757 123,573,043 RGD:2290270
G Vps33b vacuolar protein sorting 33B JBrowse link 7 80,269,621 80,291,579 RGD:9068941
G Vti1b vesicle transport through interaction with t-SNAREs 1B JBrowse link 12 79,156,017 79,172,685 RGD:9068941
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 5 142,629,533 142,669,672 RGD:9068941
autophagosome membrane docking term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg14 autophagy related 14 JBrowse link 14 47,540,893 47,568,434 RGD:2290270
G Snap29 synaptosomal-associated protein 29 JBrowse link 16 17,406,000 17,430,826 RGD:2290270
G Stx17 syntaxin 17 JBrowse link 4 48,124,906 48,186,507 RGD:2290270
G Vamp8 vesicle-associated membrane protein 8 JBrowse link 6 72,385,221 72,390,667 RGD:2290270
autophagosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp13a2 ATPase type 13A2 JBrowse link 4 140,986,216 141,007,330 RGD:2290270
G Gba glucosidase, beta, acid JBrowse link 3 89,202,905 89,208,873 RGD:2290270
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha JBrowse link 7 116,337,265 116,443,465 RGD:2290270
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta JBrowse link 1 133,045,672 133,108,691 RGD:2290270
autophagosome-endosome fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rubcnl RUN and cysteine rich domain containing beclin 1 interacting protein like JBrowse link 14 75,015,987 75,052,537 RGD:2290270
autophagosome-lysosome fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp13a2 ATPase type 13A2 JBrowse link 4 140,986,216 141,007,330 RGD:2290270
G Cln3 ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) JBrowse link 7 126,571,207 126,585,817 RGD:2290270
G Rubcnl RUN and cysteine rich domain containing beclin 1 interacting protein like JBrowse link 14 75,015,987 75,052,537 RGD:2290270
autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G 1600014C10Rik RIKEN cDNA 1600014C10 gene JBrowse link 7 38,183,217 38,197,568 RGD:2290270
G Abl1 c-abl oncogene 1, non-receptor tyrosine kinase JBrowse link 2 31,688,244 31,807,093 RGD:2290270
G Acbd5 acyl-Coenzyme A binding domain containing 5 JBrowse link 2 23,068,166 23,114,513 RGD:2290270
G Ambra1 autophagy/beclin 1 regulator 1 JBrowse link 2 91,730,138 91,918,849 RGD:2290270
G Anxa7 annexin A7 JBrowse link 14 20,455,261 20,480,133 RGD:2290270
G Arfip2 ADP-ribosylation factor interacting protein 2 JBrowse link 7 105,634,201 105,640,416 RGD:2290270
G Arsa arylsulfatase A JBrowse link 15 89,472,476 89,477,424 RGD:2290270
G Arsb arylsulfatase B JBrowse link 13 93,771,679 93,943,016 RGD:2290270
G Atg10 autophagy related 10 JBrowse link 13 90,935,348 91,224,725 RGD:2290270
G Atg101 autophagy related 101 JBrowse link 15 101,284,301 101,290,947 RGD:2290270
G Atg12 autophagy related 12 JBrowse link 18 46,732,417 46,741,724 RGD:2290270
G Atg13 autophagy related 13 JBrowse link 2 91,674,612 91,710,597 RGD:2290270
G Atg14 autophagy related 14 JBrowse link 14 47,540,893 47,568,434 RGD:2290270
G Atg16l1 autophagy related 16-like 1 (S. cerevisiae) JBrowse link 1 87,756,007 87,792,428 RGD:2290270
G Atg16l2 autophagy related 16-like 2 (S. cerevisiae) JBrowse link 7 101,286,325 101,302,267 RGD:2290270
G Atg2a autophagy related 2A JBrowse link 19 6,241,478 6,262,304 RGD:2290270
G Atg2b autophagy related 2B JBrowse link 12 105,613,539 105,685,297 RGD:2290270
G Atg3 autophagy related 3 JBrowse link 16 45,158,829 45,188,538 RGD:2290270
G Atg4b autophagy related 4B, cysteine peptidase JBrowse link 1 93,754,905 93,789,606 RGD:2290270
G Atg4c autophagy related 4C, cysteine peptidase JBrowse link 4 99,189,159 99,297,258 RGD:2290270
G Atg4d autophagy related 4D, cysteine peptidase JBrowse link 9 21,265,205 21,274,837 RGD:2290270
G Atg5 autophagy related 5 JBrowse link 10 44,268,322 44,364,299 RGD:2290270
G Atg7 autophagy related 7 JBrowse link 6 114,643,127 114,860,604 RGD:2290270
G Atg9a autophagy related 9A JBrowse link 1 75,180,861 75,192,010 RGD:2290270
G Atg9b autophagy related 9B JBrowse link 5 24,384,181 24,392,143 RGD:2290270
G Atp13a2 ATPase type 13A2 JBrowse link 4 140,986,216 141,007,330 RGD:2290270
G Becn1 beclin 1, autophagy related JBrowse link 11 101,288,258 101,302,286 RGD:2290270
G Becn2 beclin 2 JBrowse link 1 175,920,329 175,922,225 RGD:2290270
G C9orf72 C9orf72, member of C9orf72-SMCR8 complex JBrowse link 4 35,191,285 35,226,153 RGD:2290270
G Calcoco2 calcium binding and coiled-coil domain 2 JBrowse link 11 96,098,916 96,124,560 RGD:2290270
G Cd84 CD84 antigen JBrowse link 1 171,839,697 171,890,718 RGD:2290270
G Chmp4b charged multivesicular body protein 4B JBrowse link 2 154,657,026 154,694,783 RGD:2290270
G Cisd2 CDGSH iron sulfur domain 2 JBrowse link 3 135,406,412 135,424,039 RGD:2290270
G Clec16a C-type lectin domain family 16, member A JBrowse link 16 10,545,309 10,744,878 RGD:2290270
G Cltc clathrin, heavy polypeptide (Hc) JBrowse link 11 86,694,352 86,757,567 RGD:2290270
G Ctsb cathepsin B JBrowse link 14 63,122,462 63,145,923 RGD:9068941
G Dap death-associated protein JBrowse link 15 31,224,385 31,274,338 RGD:2290270
G Depp1 DEPP1 autophagy regulator JBrowse link 6 116,650,684 116,652,847 RGD:2290270
G Dram1 DNA-damage regulated autophagy modulator 1 JBrowse link 10 88,322,801 88,364,359 RGD:2290270
G Dram2 DNA-damage regulated autophagy modulator 2 JBrowse link 3 106,547,798 106,575,341 RGD:2290270
G Drd2 dopamine receptor D2 JBrowse link 9 49,340,360 49,408,177 RGD:2290270
G Drd3 dopamine receptor D3 JBrowse link 16 43,754,015 43,825,982 RGD:2290270
G Ei24 etoposide induced 2.4 mRNA JBrowse link 9 36,779,153 36,797,334 RGD:2290270
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 3 108,455,679 108,536,745 RGD:2290270
G Epg5 ectopic P-granules autophagy protein 5 homolog (C. elegans) JBrowse link 18 77,938,409 78,037,325 RGD:2290270
G Epm2a epilepsy, progressive myoclonic epilepsy, type 2 gene alpha JBrowse link 10 11,342,691 11,459,664 RGD:2290270
G Eva1a eva-1 homolog A (C. elegans) JBrowse link 6 82,041,048 82,093,099 RGD:2290270
G Fnbp1l formin binding protein 1-like JBrowse link 3 122,538,719 122,619,714 RGD:2290270
G Foxo1 forkhead box O1 JBrowse link 3 52,268,337 52,350,109 RGD:2290270
G Fundc1 FUN14 domain containing 1 JBrowse link X 17,519,967 17,572,329 RGD:2290270
G Gabarap gamma-aminobutyric acid receptor associated protein JBrowse link 11 69,991,370 69,994,949 RGD:2290270
G Gabarapl1 gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1 JBrowse link 6 129,533,192 129,542,331 RGD:2290270
G Gabarapl2 gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2 JBrowse link 8 111,940,703 111,952,915 RGD:2290270
G Gba glucosidase, beta, acid JBrowse link 3 89,202,905 89,208,873 RGD:2290270
G Gopc golgi associated PDZ and coiled-coil motif containing JBrowse link 10 52,337,024 52,382,124 RGD:2290270
G Gpr137 G protein-coupled receptor 137 JBrowse link 19 6,938,057 6,942,450 RGD:2290270
G Gramd1a GRAM domain containing 1A JBrowse link 7 31,130,127 31,155,935 RGD:2290270
G Hap1 huntingtin-associated protein 1 JBrowse link 11 100,347,327 100,356,982 RGD:2290270
G Hdac10 histone deacetylase 10 JBrowse link 15 89,123,303 89,128,700 RGD:2290270
G Hmgb1 high mobility group box 1 JBrowse link 5 149,046,702 149,053,057 RGD:2290270
G Il4 interleukin 4 JBrowse link 11 53,612,460 53,618,665 RGD:2290270
G Irf8 interferon regulatory factor 8 JBrowse link 8 120,736,358 120,756,694 RGD:2290270
G Irgm1 immunity-related GTPase family M member 1 JBrowse link 11 48,865,245 48,871,420 RGD:2290270
G Itgb4 integrin beta 4 JBrowse link 11 115,974,725 116,008,412 RGD:2290270
G Lamp2 lysosomal-associated membrane protein 2 JBrowse link X 38,399,647 38,456,460 RGD:2290270
G Lgals8 lectin, galactose binding, soluble 8 JBrowse link 13 12,439,402 12,464,977 RGD:2290270
G Lix1 limb and CNS expressed 1 JBrowse link 17 17,402,686 17,459,387 RGD:2290270
G Lix1l Lix1-like JBrowse link 3 96,601,133 96,625,352 RGD:2290270
G Lrrk2 leucine-rich repeat kinase 2 JBrowse link 15 91,672,791 91,816,124 RGD:2290270
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link 2 32,925,215 32,961,654 RGD:2290270
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha JBrowse link 2 155,276,364 155,278,073 RGD:2290270
G Map1lc3b microtubule-associated protein 1 light chain 3 beta JBrowse link 8 121,590,438 121,598,760 RGD:2290270
G Mfn2 mitofusin 2 JBrowse link 4 147,873,586 147,904,909 RGD:2290270
G Nhlrc1 NHL repeat containing 1 JBrowse link 13 47,012,557 47,014,850 RGD:2290270
G Npc1 NPC intracellular cholesterol transporter 1 JBrowse link 18 12,189,694 12,236,506 RGD:2290270
G Nrbf2 nuclear receptor binding factor 2 JBrowse link 10 67,266,689 67,285,343 RGD:2290270
G Optn optineurin JBrowse link 2 5,020,521 5,064,399 RGD:2290270
G Park7 Parkinson disease (autosomal recessive, early onset) 7 JBrowse link 4 150,897,133 150,909,921 RGD:2290270
G Phf23 PHD finger protein 23 JBrowse link 11 69,995,766 70,000,011 RGD:2290270
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 18 30,265,615 30,348,126 RGD:2290270
G Pik3cb phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta JBrowse link 9 99,038,402 99,140,235 RGD:2290270
G Pink1 PTEN induced putative kinase 1 JBrowse link 4 138,313,409 138,326,296 RGD:2290270
G Plekhm1 pleckstrin homology domain containing, family M (with RUN domain) member 1 JBrowse link 11 103,364,275 103,412,705 RGD:2290270
G Pmp22 peripheral myelin protein 22 JBrowse link 11 63,128,982 63,159,547 RGD:2290270
G Prkaa1 protein kinase, AMP-activated, alpha 1 catalytic subunit JBrowse link 15 5,143,861 5,181,899 RGD:2290270
G Prkaa2 protein kinase, AMP-activated, alpha 2 catalytic subunit JBrowse link 4 105,029,649 105,109,898 RGD:2290270
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 17 10,840,359 12,063,370 RGD:2290270
G Psen1 presenilin 1 JBrowse link 12 83,688,152 83,735,095 RGD:2290270
G Ptpn22 protein tyrosine phosphatase, non-receptor type 22 (lymphoid) JBrowse link 3 103,856,575 103,912,252 RGD:2290270
G Rab12 RAB12, member RAS oncogene family JBrowse link 17 66,494,512 66,519,750 RGD:2290270
G Rab1a RAB1A, member RAS oncogene family JBrowse link 11 20,201,412 20,226,856 RGD:2290270
G Rab1b RAB1B, member RAS oncogene family JBrowse link 19 5,099,207 5,106,996 RGD:2290270
G Rab24 RAB24, member RAS oncogene family JBrowse link 13 55,319,223 55,321,980 RGD:2290270
G Rab33b RAB33B, member RAS oncogene family JBrowse link 3 51,483,966 51,496,228 RGD:2290270
G Rab39 RAB39, member RAS oncogene family JBrowse link 9 53,684,110 53,706,232 RGD:2290270
G Rab39b RAB39B, member RAS oncogene family JBrowse link X 75,572,045 75,578,231 RGD:2290270
G Rab7 RAB7, member RAS oncogene family JBrowse link 6 87,999,106 88,045,270 RGD:2290270
G Rab8a RAB8A, member RAS oncogene family JBrowse link 8 72,161,200 72,181,366 RGD:2290270
G Rb1cc1 RB1-inducible coiled-coil 1 JBrowse link 1 6,214,634 6,276,375 RGD:2290270
G Retreg1 reticulophagy regulator 1 JBrowse link 15 25,843,298 25,973,696 RGD:2290270
G Rmc1 regulator of MON1-CCZ1 JBrowse link 18 12,168,689 12,198,675 RGD:2290270
G Rnf166 ring finger protein 166 JBrowse link 8 122,466,145 122,476,074 RGD:2290270
G Rnf185 ring finger protein 185 JBrowse link 11 3,415,973 3,452,956 RGD:2290270
G Rnf41 ring finger protein 41 JBrowse link 10 128,411,616 128,441,441 RGD:2290270
G Rubcn RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein JBrowse link 16 32,821,702 32,877,729 RGD:2290270
G Rubcnl RUN and cysteine rich domain containing beclin 1 interacting protein like JBrowse link 14 75,015,987 75,052,537 RGD:2290270
G Rufy4 RUN and FYVE domain containing 4 JBrowse link 1 74,124,433 74,148,230 RGD:2290270
G S100a8 S100 calcium binding protein A8 (calgranulin A) JBrowse link 3 90,669,071 90,670,034 RGD:2290270
G S100a9 S100 calcium binding protein A9 (calgranulin B) JBrowse link 3 90,692,630 90,695,721 RGD:2290270
G Sbf2 SET binding factor 2 JBrowse link 7 110,308,011 110,614,934 RGD:2290270
G Sirt2 sirtuin 2 JBrowse link 7 28,766,752 28,788,665 RGD:2290270
G Smcr8 Smith-Magenis syndrome chromosome region, candidate 8 homolog (human) JBrowse link 11 60,777,525 60,788,287 RGD:2290270
G Snap29 synaptosomal-associated protein 29 JBrowse link 16 17,406,000 17,430,826 RGD:2290270
G Sqstm1 sequestosome 1 JBrowse link 11 50,200,152 50,210,820 RGD:2290270
G Srpx sushi-repeat-containing protein JBrowse link X 10,037,977 10,117,640 RGD:2290270
G Stbd1 starch binding domain 1 JBrowse link 5 92,603,051 92,606,579 RGD:2290270
G Sting1 stimulator of interferon response cGAMP interactor 1 JBrowse link 18 35,733,678 35,740,554 RGD:2290270
G Stk11 serine/threonine kinase 11 JBrowse link 10 80,115,767 80,130,679 RGD:2290270
G Stx17 syntaxin 17 JBrowse link 4 48,124,906 48,186,507 RGD:2290270
G Syt11 synaptotagmin XI JBrowse link 3 88,744,699 88,775,159 RGD:2290270
G Tbc1d17 TBC1 domain family, member 17 JBrowse link 7 44,840,776 44,849,079 RGD:2290270
G Tbc1d25 TBC1 domain family, member 25 JBrowse link X 8,154,470 8,176,181 RGD:2290270
G Tbc1d5 TBC1 domain family, member 5 JBrowse link 17 50,733,124 51,181,199 RGD:2290270
G Tecpr1 tectonin beta-propeller repeat containing 1 JBrowse link 5 144,194,442 144,223,615 RGD:2290270
G Tfeb transcription factor EB JBrowse link 17 47,737,037 47,792,416 RGD:2290270
G Tigar Trp53 induced glycolysis regulatory phosphatase JBrowse link 6 127,085,116 127,109,552 RGD:2290270
G Tm9sf1 transmembrane 9 superfamily member 1 JBrowse link 14 55,635,965 55,643,806 RGD:2290270
G Tmbim6 transmembrane BAX inhibitor motif containing 6 JBrowse link 15 99,392,947 99,410,049 RGD:2290270
G Tmem150b transmembrane protein 150B JBrowse link 7 4,706,832 4,725,251 RGD:2290270
G Tmem208 transmembrane protein 208 JBrowse link 8 105,326,341 105,335,485 RGD:2290270
G Tmem39a transmembrane protein 39a JBrowse link 16 38,558,698 38,592,162 RGD:2290270
G Tmem41b transmembrane protein 41B JBrowse link 7 109,971,215 109,986,804 RGD:2290270
G Tmem59 transmembrane protein 59 JBrowse link 4 107,178,630 107,200,996 RGD:2290270
G Tmem74 transmembrane protein 74 JBrowse link 15 43,863,345 43,870,059 RGD:2290270
G Tollip toll interacting protein JBrowse link 7 141,881,580 141,902,461 RGD:2290270
G Trappc4 trafficking protein particle complex 4 JBrowse link 9 44,403,755 44,407,548 RGD:2290270
G Trim12a tripartite motif-containing 12A JBrowse link 7 104,299,893 104,315,558 RGD:2290270
G Trim17 tripartite motif-containing 17 JBrowse link 11 58,954,671 58,973,075 RGD:2290270
G Trim30a tripartite motif-containing 30A JBrowse link 7 104,409,025 104,465,193 RGD:2290270
G Trim5 tripartite motif-containing 5 JBrowse link 7 104,263,386 104,288,254 RGD:9068941
G Trp53 transformation related protein 53 JBrowse link 11 69,580,348 69,591,873 RGD:2290270
G Trp53inp1 transformation related protein 53 inducible nuclear protein 1 JBrowse link 4 11,156,441 11,174,379 RGD:2290270
G Trp53inp2 transformation related protein 53 inducible nuclear protein 2 JBrowse link 2 155,381,811 155,389,847 RGD:2290270
G Ubqln1 ubiquilin 1 JBrowse link 13 58,176,156 58,215,653 RGD:2290270
G Ubqln2 ubiquilin 2 JBrowse link X 153,498,232 153,501,562 RGD:2290270
G Ubqln4 ubiquilin 4 JBrowse link 3 88,553,677 88,569,725 RGD:2290270
G Ulk1 unc-51 like kinase 1 JBrowse link 5 110,784,489 110,810,120 RGD:2290270
G Ulk2 unc-51 like kinase 2 JBrowse link 11 61,775,598 61,855,334 RGD:2290270
G Ulk3 unc-51-like kinase 3 JBrowse link 9 57,589,141 57,596,233 RGD:2290270
G Umod uromodulin JBrowse link 7 119,462,708 119,479,262 RGD:2290270
G Usp10 ubiquitin specific peptidase 10 JBrowse link 8 119,910,360 119,957,560 RGD:2290270
G Usp13 ubiquitin specific peptidase 13 (isopeptidase T-3) JBrowse link 3 32,816,283 32,938,075 RGD:2290270
G Uvrag UV radiation resistance associated gene JBrowse link 7 98,886,742 99,141,167 RGD:2290270
G Vamp8 vesicle-associated membrane protein 8 JBrowse link 6 72,385,221 72,390,667 RGD:2290270
G Vcp valosin containing protein JBrowse link 4 42,979,964 43,000,507 RGD:2290270
G Vmp1 vacuole membrane protein 1 JBrowse link 11 86,583,858 86,683,836 RGD:2290270
G Vps11 VPS11, CORVET/HOPS core subunit JBrowse link 9 44,347,749 44,361,673 RGD:2290270
G Vps13a vacuolar protein sorting 13A JBrowse link 19 16,615,366 16,781,071 RGD:2290270
G Vps16 VSP16 CORVET/HOPS core subunit JBrowse link 2 130,424,320 130,444,269 RGD:2290270
G Vps18 VPS18 CORVET/HOPS core subunit JBrowse link 2 119,288,742 119,298,453 RGD:2290270
G Vps33a VPS33A CORVET/HOPS core subunit JBrowse link 5 123,528,757 123,573,043 RGD:2290270
G Vps39 VPS39 HOPS complex subunit JBrowse link 2 120,316,461 120,353,142 RGD:2290270
G Vps41 VPS41 HOPS complex subunit JBrowse link 13 18,717,292 18,866,811 RGD:2290270
G Vps51 VPS51 GARP complex subunit JBrowse link 19 6,067,842 6,077,187 RGD:2290270
G Vti1a vesicle transport through interaction with t-SNAREs 1A JBrowse link 19 55,316,030 55,627,461 RGD:2290270
G Wdfy3 WD repeat and FYVE domain containing 3 JBrowse link 5 101,832,953 102,072,215 RGD:2290270
G Wdfy4 WD repeat and FYVE domain containing 4 JBrowse link 14 32,959,547 33,193,855 RGD:2290270
G Wdr24 WD repeat domain 24 JBrowse link 17 25,823,627 25,828,730 RGD:2290270
G Wdr41 WD repeat domain 41 JBrowse link 13 94,976,329 95,023,316 RGD:2290270
G Wdr45 WD repeat domain 45 JBrowse link X 7,721,987 7,728,201 RGD:2290270
G Wdr45b WD repeat domain 45B JBrowse link 11 121,327,203 121,354,447 RGD:2290270
G Wipi1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 11 109,573,521 109,611,389 RGD:2290270
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 5 142,629,533 142,669,672 RGD:2290270
G Xbp1 X-box binding protein 1 JBrowse link 11 5,520,641 5,525,993 RGD:2290270
G Zkscan3 zinc finger with KRAB and SCAN domains 3 JBrowse link 13 21,387,004 21,402,755 RGD:2290270
autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G 1700034I23Rik RIKEN cDNA 1700034I23 gene JBrowse link 3 40,900,196 40,902,501 RGD:2290270
G Ambra1 autophagy/beclin 1 regulator 1 JBrowse link 2 91,730,138 91,918,849 RGD:2290270
G Atg12 autophagy related 12 JBrowse link 18 46,732,417 46,741,724 RGD:2290270
G Atg13 autophagy related 13 JBrowse link 2 91,674,612 91,710,597 RGD:2290270
G Atg2a autophagy related 2A JBrowse link 19 6,241,478 6,262,304 RGD:2290270
G Atg2b autophagy related 2B JBrowse link 12 105,613,539 105,685,297 RGD:2290270
G Atg3 autophagy related 3 JBrowse link 16 45,158,829 45,188,538 RGD:2290270
G Atg5 autophagy related 5 JBrowse link 10 44,268,322 44,364,299 RGD:2290270
G Atg7 autophagy related 7 JBrowse link 6 114,643,127 114,860,604 RGD:2290270
G Atg9a autophagy related 9A JBrowse link 1 75,180,861 75,192,010 RGD:2290270
G Atg9b autophagy related 9B JBrowse link 5 24,384,181 24,392,143 RGD:2290270
G Becn1 beclin 1, autophagy related JBrowse link 11 101,288,258 101,302,286 RGD:2290270
G Capn10 calpain 10 JBrowse link 1 92,934,408 92,947,948 RGD:2290270
G Cdkn2a cyclin dependent kinase inhibitor 2A JBrowse link 4 89,274,473 89,294,619 RGD:2290270
G Cisd2 CDGSH iron sulfur domain 2 JBrowse link 3 135,406,412 135,424,039 RGD:2290270
G Ctsk cathepsin K JBrowse link 3 95,499,210 95,509,387 RGD:9068941
G Fbxo7 F-box protein 7 JBrowse link 10 86,020,449 86,051,873 RGD:2290270
G Fis1 fission, mitochondrial 1 JBrowse link 5 136,953,275 136,966,234 RGD:2290270
G Fundc1 FUN14 domain containing 1 JBrowse link X 17,519,967 17,572,329 RGD:2290270
G Fundc2 FUN14 domain containing 2 JBrowse link X 75,382,399 75,397,158 RGD:2290270
G Gabarap gamma-aminobutyric acid receptor associated protein JBrowse link 11 69,991,370 69,994,949 RGD:2290270
G Gabarapl1 gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1 JBrowse link 6 129,533,192 129,542,331 RGD:2290270
G Gabarapl2 gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2 JBrowse link 8 111,940,703 111,952,915 RGD:2290270
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha JBrowse link 2 155,276,364 155,278,073 RGD:2290270
G Map1lc3b microtubule-associated protein 1 light chain 3 beta JBrowse link 8 121,590,438 121,598,760 RGD:2290270
G Pink1 PTEN induced putative kinase 1 JBrowse link 4 138,313,409 138,326,296 RGD:2290270
G Ppargc1a peroxisome proliferative activated receptor, gamma, coactivator 1 alpha JBrowse link 5 51,454,249 52,115,853 RGD:9068941
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 17 10,840,359 12,063,370 RGD:2290270
G Rb1cc1 RB1-inducible coiled-coil 1 JBrowse link 1 6,214,634 6,276,375 RGD:2290270
G Slc25a46 solute carrier family 25, member 46 JBrowse link 18 31,580,164 31,610,532 RGD:2290270
G Usp30 ubiquitin specific peptidase 30 JBrowse link 5 114,100,299 114,123,510 RGD:2290270
G Wdr45 WD repeat domain 45 JBrowse link X 7,721,987 7,728,201 RGD:2290270
G Wdr45b WD repeat domain 45B JBrowse link 11 121,327,203 121,354,447 RGD:2290270
G Wipi1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 11 109,573,521 109,611,389 RGD:2290270
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 5 142,629,533 142,669,672 RGD:2290270
autophagy of nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg12 autophagy related 12 JBrowse link 18 46,732,417 46,741,724 RGD:2290270
G Atg13 autophagy related 13 JBrowse link 2 91,674,612 91,710,597 RGD:2290270
G Atg2a autophagy related 2A JBrowse link 19 6,241,478 6,262,304 RGD:2290270
G Atg2b autophagy related 2B JBrowse link 12 105,613,539 105,685,297 RGD:2290270
G Atg3 autophagy related 3 JBrowse link 16 45,158,829 45,188,538 RGD:2290270
G Atg5 autophagy related 5 JBrowse link 10 44,268,322 44,364,299 RGD:2290270
G Wdr45 WD repeat domain 45 JBrowse link X 7,721,987 7,728,201 RGD:2290270
G Wdr45b WD repeat domain 45B JBrowse link 11 121,327,203 121,354,447 RGD:2290270
G Wipi1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 11 109,573,521 109,611,389 RGD:2290270
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 5 142,629,533 142,669,672 RGD:2290270
autophagy of peroxisome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acbd5 acyl-Coenzyme A binding domain containing 5 JBrowse link 2 23,068,166 23,114,513 RGD:2290270
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 18 30,265,615 30,348,126 RGD:2290270
G Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 JBrowse link 9 105,642,995 105,687,655 RGD:2290270
G Rb1cc1 RB1-inducible coiled-coil 1 JBrowse link 1 6,214,634 6,276,375 RGD:2290270
G Trappc8 trafficking protein particle complex 8 JBrowse link 18 20,817,211 20,896,425 RGD:2290270
chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg5 autophagy related 5 JBrowse link 10 44,268,322 44,364,299 RGD:9068941
G Atg7 autophagy related 7 JBrowse link 6 114,643,127 114,860,604 RGD:2290270
G Bag3 BCL2-associated athanogene 3 JBrowse link 7 128,523,583 128,546,981 RGD:2290270
G Hspa8 heat shock protein 8 JBrowse link 9 40,801,276 40,805,202 RGD:2290270
G Lamp2 lysosomal-associated membrane protein 2 JBrowse link X 38,399,647 38,456,460 RGD:2290270
G Stub1 STIP1 homology and U-Box containing protein 1 JBrowse link 17 25,830,634 25,832,919 RGD:2290270
G Synpo2 synaptopodin 2 JBrowse link 3 123,076,519 123,236,168 RGD:2290270
chaperone-mediated protein transport involved in chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hspa8 heat shock protein 8 JBrowse link 9 40,801,276 40,805,202 RGD:2290270
engulfment of target by autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 5 144,876,495 144,965,899 RGD:2290270
glycophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rb1cc1 RB1-inducible coiled-coil 1 JBrowse link 1 6,214,634 6,276,375 RGD:2290270
G Stbd1 starch binding domain 1 JBrowse link 5 92,603,051 92,606,579 RGD:2290270
induction by virus of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 JBrowse link 2 118,388,583 118,475,234 RGD:2290270
G Phb2 prohibitin 2 JBrowse link 6 124,712,289 124,716,945 RGD:2290270
late endosomal microautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hspa8 heat shock protein 8 JBrowse link 9 40,801,276 40,805,202 RGD:2290270
G Vps4a vacuolar protein sorting 4A JBrowse link 8 107,031,269 107,045,760 RGD:2290270
G Vps4b vacuolar protein sorting 4B JBrowse link 1 106,770,788 106,796,725 RGD:2290270
late nucleophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg7 autophagy related 7 JBrowse link 6 114,643,127 114,860,604 RGD:2290270
G Atg9a autophagy related 9A JBrowse link 1 75,180,861 75,192,010 RGD:2290270
G Atg9b autophagy related 9B JBrowse link 5 24,384,181 24,392,143 RGD:2290270
lipophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aup1 ancient ubiquitous protein 1 JBrowse link 6 83,054,495 83,057,682 RGD:2290270
G Rab7 RAB7, member RAS oncogene family JBrowse link 6 87,999,106 88,045,270 RGD:2290270
macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acbd5 acyl-Coenzyme A binding domain containing 5 JBrowse link 2 23,068,166 23,114,513 RGD:9068941
G Atg10 autophagy related 10 JBrowse link 13 90,935,348 91,224,725 RGD:2290270
G Atg13 autophagy related 13 JBrowse link 2 91,674,612 91,710,597 RGD:2290270
G Atg14 autophagy related 14 JBrowse link 14 47,540,893 47,568,434 RGD:2290270
G Atg3 autophagy related 3 JBrowse link 16 45,158,829 45,188,538 RGD:2290270
G Atg5 autophagy related 5 JBrowse link 10 44,268,322 44,364,299 RGD:2290270
G Atg7 autophagy related 7 JBrowse link 6 114,643,127 114,860,604 RGD:2290270
G Becn1 beclin 1, autophagy related JBrowse link 11 101,288,258 101,302,286 RGD:2290270
G Cln3 ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) JBrowse link 7 126,571,207 126,585,817 RGD:2290270
G Ei24 etoposide induced 2.4 mRNA JBrowse link 9 36,779,153 36,797,334 RGD:2290270
G Gabarap gamma-aminobutyric acid receptor associated protein JBrowse link 11 69,991,370 69,994,949 RGD:2290270
G Gabarapl1 gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1 JBrowse link 6 129,533,192 129,542,331 RGD:2290270
G Gabarapl2 gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2 JBrowse link 8 111,940,703 111,952,915 RGD:2290270
G Hdac10 histone deacetylase 10 JBrowse link 15 89,123,303 89,128,700 RGD:2290270
G Ighv1-47 immunoglobulin heavy variable 1-47 JBrowse link 12 114,991,108 114,991,401 RGD:9068941
G Ilrun inflammation and lipid regulator with UBA-like and NBR1-like domains JBrowse link 17 27,751,232 27,820,542 RGD:2290270
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha JBrowse link 2 155,276,364 155,278,073 RGD:2290270
G Map1lc3b microtubule-associated protein 1 light chain 3 beta JBrowse link 8 121,590,438 121,598,760 RGD:2290270
G Nbr1 NBR1, autophagy cargo receptor JBrowse link 11 101,552,107 101,581,951 RGD:2290270
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha JBrowse link 7 116,337,265 116,443,465 RGD:2290270
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta JBrowse link 1 133,045,672 133,108,691 RGD:2290270
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 18 30,265,615 30,348,126 RGD:2290270
G Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 JBrowse link 9 105,642,995 105,687,655 RGD:2290270
G Plaa phospholipase A2, activating protein JBrowse link 4 94,565,139 94,603,247 RGD:2290270
G Sqstm1 sequestosome 1 JBrowse link 11 50,200,152 50,210,820 RGD:2290270
G Tbc1d5 TBC1 domain family, member 5 JBrowse link 17 50,733,124 51,181,199 RGD:2290270
G Tcirg1 T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 JBrowse link 19 3,896,050 3,907,133 RGD:2290270
G Tmem74 transmembrane protein 74 JBrowse link 15 43,863,345 43,870,059 RGD:2290270
G Trp53inp2 transformation related protein 53 inducible nuclear protein 2 JBrowse link 2 155,381,811 155,389,847 RGD:2290270
G Ubqln1 ubiquilin 1 JBrowse link 13 58,176,156 58,215,653 RGD:2290270
G Ubxn6 UBX domain protein 6 JBrowse link 17 56,067,045 56,079,333 RGD:2290270
G Ulk1 unc-51 like kinase 1 JBrowse link 5 110,784,489 110,810,120 RGD:2290270
G Vcp valosin containing protein JBrowse link 4 42,979,964 43,000,507 RGD:2290270
G Yod1 YOD1 deubiquitinase JBrowse link 1 130,717,327 130,722,073 RGD:2290270
G Zfyve1 zinc finger, FYVE domain containing 1 JBrowse link 12 83,546,556 83,597,245 RGD:2290270
mitophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ambra1 autophagy/beclin 1 regulator 1 JBrowse link 2 91,730,138 91,918,849 RGD:2290270
G Atg13 autophagy related 13 JBrowse link 2 91,674,612 91,710,597 RGD:2290270
G Atg14 autophagy related 14 JBrowse link 14 47,540,893 47,568,434 RGD:2290270
G Becn1 beclin 1, autophagy related JBrowse link 11 101,288,258 101,302,286 RGD:2290270
G Map1lc3b microtubule-associated protein 1 light chain 3 beta JBrowse link 8 121,590,438 121,598,760 RGD:2290270
G Phb2 prohibitin 2 JBrowse link 6 124,712,289 124,716,945 RGD:2290270
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 17 10,840,359 12,063,370 RGD:2290270
G Sqstm1 sequestosome 1 JBrowse link 11 50,200,152 50,210,820 RGD:2290270
G Ulk1 unc-51 like kinase 1 JBrowse link 5 110,784,489 110,810,120 RGD:2290270
mitophagy by induced vacuole formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Spata18 spermatogenesis associated 18 JBrowse link 5 73,651,380 73,679,584 RGD:2290270
negative regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Becn1 beclin 1, autophagy related JBrowse link 11 101,288,258 101,302,286 RGD:2290270
G Chmp4b charged multivesicular body protein 4B JBrowse link 2 154,657,026 154,694,783 RGD:2290270
G Ehmt2 euchromatic histone lysine N-methyltransferase 2 JBrowse link 17 34,898,463 34,914,073 RGD:2290270
G Fez1 fasciculation and elongation protein zeta 1 (zygin I) JBrowse link 9 36,821,398 36,878,926 RGD:2290270
G Fez2 fasciculation and elongation protein zeta 2 (zygin II) JBrowse link 17 78,369,212 78,418,152 RGD:2290270
G Lrrk2 leucine-rich repeat kinase 2 JBrowse link 15 91,672,791 91,816,124 RGD:2290270
G Mtm1 X-linked myotubular myopathy gene 1 JBrowse link X 71,210,767 71,315,413 RGD:2290270
G Nupr1 nuclear protein transcription regulator 1 JBrowse link 7 126,623,246 126,625,470 RGD:2290270
G Phf23 PHD finger protein 23 JBrowse link 11 69,995,766 70,000,011 RGD:2290270
G Pink1 PTEN induced putative kinase 1 JBrowse link 4 138,313,409 138,326,296 RGD:2290270
G Scfd1 Sec1 family domain containing 1 JBrowse link 12 51,377,513 51,450,104 RGD:2290270
G Sec22b SEC22 homolog B, vesicle trafficking protein JBrowse link 3 97,901,227 97,922,318 RGD:2290270
G Smcr8 Smith-Magenis syndrome chromosome region, candidate 8 homolog (human) JBrowse link 11 60,777,525 60,788,287 RGD:2290270
G Tmem39a transmembrane protein 39a JBrowse link 16 38,558,698 38,592,162 RGD:2290270
negative regulation of autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clec16a C-type lectin domain family 16, member A JBrowse link 16 10,545,309 10,744,878 RGD:2290270
G Phf23 PHD finger protein 23 JBrowse link 11 69,995,766 70,000,011 RGD:2290270
G Rubcn RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein JBrowse link 16 32,821,702 32,877,729 RGD:2290270
G Tmem39a transmembrane protein 39a JBrowse link 16 38,558,698 38,592,162 RGD:2290270
G Ubqln4 ubiquilin 4 JBrowse link 3 88,553,677 88,569,725 RGD:2290270
negative regulation of autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adra1a adrenergic receptor, alpha 1a JBrowse link 14 66,635,251 66,771,240 RGD:2290270
G Akt1 thymoma viral proto-oncogene 1 JBrowse link 12 112,653,821 112,674,884 RGD:2290270
G Bcl2 B cell leukemia/lymphoma 2 JBrowse link 1 106,538,176 106,714,290 RGD:2290270
G Becn1 beclin 1, autophagy related JBrowse link 11 101,288,258 101,302,286 RGD:2290270
G Bmf BCL2 modifying factor JBrowse link 2 118,528,757 118,549,686 RGD:2290270
G Cptp ceramide-1-phosphate transfer protein JBrowse link 4 155,864,723 155,869,440 RGD:2290270
G Dap death-associated protein JBrowse link 15 31,224,385 31,274,338 RGD:2290270
G Dapl1 death associated protein-like 1 JBrowse link 2 59,484,653 59,505,020 RGD:2290270
G Eif4e eukaryotic translation initiation factor 4E JBrowse link 3 138,526,191 138,559,696 RGD:9068941
G Eif4g1 eukaryotic translation initiation factor 4, gamma 1 JBrowse link 16 20,672,720 20,692,883 RGD:2290270
G Eif4g2 eukaryotic translation initiation factor 4, gamma 2 JBrowse link 7 111,067,985 111,083,030 RGD:2290270
G Eif4g3 eukaryotic translation initiation factor 4 gamma, 3 JBrowse link 4 137,991,779 138,207,086 RGD:9068941
G Foxk1 forkhead box K1 JBrowse link 5 142,401,497 142,462,015 RGD:2290270
G Foxk2 forkhead box K2 JBrowse link 11 121,259,987 121,309,900 RGD:2290270
G Gata4 GATA binding protein 4 JBrowse link 14 63,198,914 63,271,712 RGD:2290270
G Golga2 golgi autoantigen, golgin subfamily a, 2 JBrowse link 2 32,288,287 32,307,913 RGD:2290270
G Herc1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 JBrowse link 9 66,350,412 66,508,775 RGD:2290270
G Htr2b 5-hydroxytryptamine (serotonin) receptor 2B JBrowse link 1 86,097,546 86,116,231 RGD:2290270
G Il10 interleukin 10 JBrowse link 1 131,019,845 131,024,970 RGD:2290270
G Il10ra interleukin 10 receptor, alpha JBrowse link 9 45,253,837 45,269,149 RGD:2290270
G Il3 interleukin 3 JBrowse link 11 54,265,085 54,267,279 RGD:2290270
G Kdm4a lysine (K)-specific demethylase 4A JBrowse link 4 118,136,957 118,180,090 RGD:2290270
G Klhl22 kelch-like 22 JBrowse link 16 17,759,621 17,793,382 RGD:2290270
G Lep leptin JBrowse link 6 29,060,221 29,073,876 RGD:2290270
G Lepr leptin receptor JBrowse link 4 101,717,137 101,815,352 RGD:2290270
G Mcl1 myeloid cell leukemia sequence 1 JBrowse link 3 95,656,944 95,663,179 RGD:2290270
G Mir223 microRNA 223 JBrowse link X 96,242,817 96,242,926 RGD:9068941
G Mt3 metallothionein 3 JBrowse link 8 94,152,607 94,154,148 RGD:2290270
G Mtmr9 myotubularin related protein 9 JBrowse link 14 63,519,651 63,544,027 RGD:2290270
G Mtor mechanistic target of rapamycin kinase JBrowse link 4 148,448,582 148,557,685 RGD:2290270
G Nampt nicotinamide phosphoribosyltransferase JBrowse link 12 32,820,335 32,853,369 RGD:2290270
G Nupr1 nuclear protein transcription regulator 1 JBrowse link 7 126,623,246 126,625,470 RGD:2290270
G Ptk2 PTK2 protein tyrosine kinase 2 JBrowse link 15 73,205,102 73,423,820 RGD:2290270
G Ptpn22 protein tyrosine phosphatase, non-receptor type 22 (lymphoid) JBrowse link 3 103,856,575 103,912,252 RGD:2290270
G Rasip1 Ras interacting protein 1 JBrowse link 7 45,627,537 45,639,092 RGD:2290270
G Rnf5 ring finger protein 5 JBrowse link 17 34,601,099 34,603,561 RGD:2290270
G Rraga Ras-related GTP binding A JBrowse link 4 86,575,673 86,577,285 RGD:2290270
G Rubcn RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein JBrowse link 16 32,821,702 32,877,729 RGD:2290270
G Sirt2 sirtuin 2 JBrowse link 7 28,766,752 28,788,665 RGD:2290270
G Smg1 SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) JBrowse link 7 118,131,308 118,244,437 RGD:2290270
G Stat3 signal transducer and activator of transcription 3 JBrowse link 11 100,886,806 100,939,594 RGD:2290270
G Tbc1d14 TBC1 domain family, member 14 JBrowse link 5 36,490,604 36,586,271 RGD:2290270
G Tnfaip3 tumor necrosis factor, alpha-induced protein 3 JBrowse link 10 19,000,910 19,015,410 RGD:2290270
G Trem2 triggering receptor expressed on myeloid cells 2 JBrowse link 17 48,346,401 48,352,276 RGD:2290270
G Washc1 WASH complex subunit 1 JBrowse link 17 66,111,529 66,120,503 RGD:2290270
G Wdr6 WD repeat domain 6 JBrowse link 9 108,572,311 108,578,713 RGD:2290270
G Zkscan3 zinc finger with KRAB and SCAN domains 3 JBrowse link 13 21,387,004 21,402,755 RGD:2290270
negative regulation of autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pink1 PTEN induced putative kinase 1 JBrowse link 4 138,313,409 138,326,296 RGD:2290270
G Tspo translocator protein JBrowse link 15 83,563,573 83,574,203 RGD:2290270
negative regulation of chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctsa cathepsin A JBrowse link 2 164,832,872 164,841,032 RGD:2290270
G Snca synuclein, alpha JBrowse link 6 60,731,573 60,829,855 RGD:2290270
negative regulation of macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hmox1 heme oxygenase 1 JBrowse link 8 75,093,618 75,100,593 RGD:2290270
G Lrrk2 leucine-rich repeat kinase 2 JBrowse link 15 91,672,791 91,816,124 RGD:2290270
G Lzts1 leucine zipper, putative tumor suppressor 1 JBrowse link 8 69,132,659 69,184,249 RGD:2290270
G Mtor mechanistic target of rapamycin kinase JBrowse link 4 148,448,582 148,557,685 RGD:2290270
G Npc1 NPC intracellular cholesterol transporter 1 JBrowse link 18 12,189,694 12,236,506 RGD:2290270
G Nrbp2 nuclear receptor binding protein 2 JBrowse link 15 76,085,515 76,091,690 RGD:9068941
G Pink1 PTEN induced putative kinase 1 JBrowse link 4 138,313,409 138,326,296 RGD:2290270
G Poldip2 polymerase (DNA-directed), delta interacting protein 2 JBrowse link 11 78,512,296 78,522,736 RGD:2290270
G Qsox1 quiescin Q6 sulfhydryl oxidase 1 JBrowse link 1 155,778,155 155,812,899 RGD:2290270
G Smcr8 Smith-Magenis syndrome chromosome region, candidate 8 homolog (human) JBrowse link 11 60,777,525 60,788,287 RGD:2290270
G Smg1 SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) JBrowse link 7 118,131,308 118,244,437 RGD:2290270
G Tsc1 TSC complex subunit 1 JBrowse link 2 28,640,993 28,691,172 RGD:2290270
G Tsc2 TSC complex subunit 2 JBrowse link 17 24,595,816 24,632,676 RGD:2290270
G Usp36 ubiquitin specific peptidase 36 JBrowse link 11 118,259,651 118,290,260 RGD:2290270
negative regulation of macroautophagy by TORC1 signaling term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clec16a C-type lectin domain family 16, member A JBrowse link 16 10,545,309 10,744,878 RGD:2290270
negative regulation of mitophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clec16a C-type lectin domain family 16, member A JBrowse link 16 10,545,309 10,744,878 RGD:2290270
G Rnf41 ring finger protein 41 JBrowse link 10 128,411,616 128,441,441 RGD:2290270
G Tigar Trp53 induced glycolysis regulatory phosphatase JBrowse link 6 127,085,116 127,109,552 RGD:2290270
G Trp53 transformation related protein 53 JBrowse link 11 69,580,348 69,591,873 RGD:2290270
G Usp30 ubiquitin specific peptidase 30 JBrowse link 5 114,100,299 114,123,510 RGD:2290270
negative regulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Htra2 HtrA serine peptidase 2 JBrowse link 6 83,051,266 83,054,571 RGD:2290270
negative regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Vps13c vacuolar protein sorting 13C JBrowse link 9 67,840,316 67,997,744 RGD:2290270
parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hdac6 histone deacetylase 6 JBrowse link X 7,930,116 7,948,047 RGD:2290270
G Mfn2 mitofusin 2 JBrowse link 4 147,873,586 147,904,909 RGD:2290270
G Optn optineurin JBrowse link 2 5,020,521 5,064,399 RGD:2290270
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 17 10,840,359 12,063,370 RGD:2290270
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 5 144,876,495 144,965,899 RGD:2290270
piecemeal microautophagy of the nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg13 autophagy related 13 JBrowse link 2 91,674,612 91,710,597 RGD:2290270
G Atg7 autophagy related 7 JBrowse link 6 114,643,127 114,860,604 RGD:2290270
G Rb1cc1 RB1-inducible coiled-coil 1 JBrowse link 1 6,214,634 6,276,375 RGD:2290270
positive regulation by symbiont of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg5 autophagy related 5 JBrowse link 10 44,268,322 44,364,299 RGD:2290270
G Atg7 autophagy related 7 JBrowse link 6 114,643,127 114,860,604 RGD:2290270
G Irgm1 immunity-related GTPase family M member 1 JBrowse link 11 48,865,245 48,871,420 RGD:2290270
G Irgm2 immunity-related GTPase family M member 2 JBrowse link 11 58,214,977 58,222,783 RGD:2290270
G Ulk1 unc-51 like kinase 1 JBrowse link 5 110,784,489 110,810,120 RGD:2290270
G Ulk2 unc-51 like kinase 2 JBrowse link 11 61,775,598 61,855,334 RGD:2290270
positive regulation of aggrephagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bag3 BCL2-associated athanogene 3 JBrowse link 7 128,523,583 128,546,981 RGD:2290270
G Hspb8 heat shock protein 8 JBrowse link 5 116,408,491 116,422,864 RGD:2290270
G Htt huntingtin JBrowse link 5 34,761,721 34,912,534 RGD:2290270
positive regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Becn1 beclin 1, autophagy related JBrowse link 11 101,288,258 101,302,286 RGD:2290270
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 3 108,455,679 108,536,745 RGD:2290270
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link 2 32,925,215 32,961,654 RGD:2290270
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase, type II, alpha JBrowse link 2 18,842,255 18,998,291 RGD:2290270
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase, type II, beta JBrowse link 11 97,715,157 97,744,704 RGD:2290270
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase, type II, gamma JBrowse link 10 127,197,067 127,211,628 RGD:2290270
G Rab3gap1 RAB3 GTPase activating protein subunit 1 JBrowse link 1 127,868,755 127,943,876 RGD:2290270
G Rab3gap2 RAB3 GTPase activating protein subunit 2 JBrowse link 1 185,204,088 185,286,756 RGD:2290270
G Ralb v-ral simian leukemia viral oncogene B JBrowse link 1 119,470,305 119,504,782 RGD:2290270
G Sh3glb1 SH3-domain GRB2-like B1 (endophilin) JBrowse link 3 144,683,665 144,720,408 RGD:2290270
G Ulk1 unc-51 like kinase 1 JBrowse link 5 110,784,489 110,810,120 RGD:2290270
positive regulation of autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adrb2 adrenergic receptor, beta 2 JBrowse link 18 62,177,713 62,179,981 RGD:2290270
G Calcoco2 calcium binding and coiled-coil domain 2 JBrowse link 11 96,098,916 96,124,560 RGD:2290270
G Clec16a C-type lectin domain family 16, member A JBrowse link 16 10,545,309 10,744,878 RGD:2290270
G Fyco1 FYVE and coiled-coil domain containing 1 JBrowse link 9 123,789,500 123,851,899 RGD:2290270
G Irgm1 immunity-related GTPase family M member 1 JBrowse link 11 48,865,245 48,871,420 RGD:2290270
G Irgm2 immunity-related GTPase family M member 2 JBrowse link 11 58,214,977 58,222,783 RGD:2290270
G Smcr8 Smith-Magenis syndrome chromosome region, candidate 8 homolog (human) JBrowse link 11 60,777,525 60,788,287 RGD:2290270
positive regulation of autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ager advanced glycosylation end product-specific receptor JBrowse link 17 34,597,460 34,600,937 RGD:2290270
G Ambra1 autophagy/beclin 1 regulator 1 JBrowse link 2 91,730,138 91,918,849 RGD:2290270
G Atf6 activating transcription factor 6 JBrowse link 1 170,704,457 170,868,585 RGD:2290270
G Atg16l1 autophagy related 16-like 1 (S. cerevisiae) JBrowse link 1 87,756,007 87,792,428 RGD:2290270
G Atg7 autophagy related 7 JBrowse link 6 114,643,127 114,860,604 RGD:2290270
G Becn1 beclin 1, autophagy related JBrowse link 11 101,288,258 101,302,286 RGD:2290270
G Dapk1 death associated protein kinase 1 JBrowse link 13 60,601,723 60,763,191 RGD:2290270
G Dcn decorin JBrowse link 10 97,479,500 97,518,163 RGD:2290270
G Dhrsx dehydrogenase/reductase (SDR family) X chromosome RGD:2290270
G Flcn folliculin JBrowse link 11 59,791,408 59,810,039 RGD:2290270
G Foxo1 forkhead box O1 JBrowse link 3 52,268,337 52,350,109 RGD:2290270
G Foxo3 forkhead box O3 JBrowse link 10 42,181,845 42,276,695 RGD:2290270
G Gsk3a glycogen synthase kinase 3 alpha JBrowse link 7 25,228,258 25,237,851 RGD:2290270
G Gsk3b glycogen synthase kinase 3 beta JBrowse link 16 38,089,001 38,246,084 RGD:2290270
G Hif1a hypoxia inducible factor 1, alpha subunit JBrowse link 12 73,901,324 73,947,554 RGD:2290270
G Hmgb1 high mobility group box 1 JBrowse link 5 149,046,702 149,053,057 RGD:2290270
G Ifng interferon gamma JBrowse link 10 118,441,046 118,445,894 RGD:2290270
G Irgm1 immunity-related GTPase family M member 1 JBrowse link 11 48,865,245 48,871,420 RGD:9068941
G Irgm2 immunity-related GTPase family M member 2 JBrowse link 11 58,214,977 58,222,783 RGD:2290270
G Kat5 K(lysine) acetyltransferase 5 JBrowse link 19 5,603,014 5,611,556 RGD:2290270
G Lrrk2 leucine-rich repeat kinase 2 JBrowse link 15 91,672,791 91,816,124 RGD:2290270
G Map2k1 mitogen-activated protein kinase kinase 1 JBrowse link 9 64,185,769 64,253,605 RGD:2290270
G Mefv Mediterranean fever JBrowse link 16 3,706,974 3,718,211 RGD:2290270
G Mid2 midline 2 JBrowse link X 140,664,304 140,767,715 RGD:2290270
G Mtdh metadherin JBrowse link 15 34,082,442 34,143,537 RGD:2290270
G Nprl2 NPR2 like, GATOR1 complex subunit JBrowse link 9 107,542,177 107,545,706 RGD:2290270
G Optn optineurin JBrowse link 2 5,020,521 5,064,399 RGD:2290270
G Ormdl3 ORM1-like 3 (S. cerevisiae) JBrowse link 11 98,581,294 98,587,245 RGD:2290270
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha JBrowse link 7 116,337,265 116,443,465 RGD:2290270
G Pim2 proviral integration site 2 JBrowse link X 7,878,306 7,883,432 RGD:2290270
G Plekhf1 pleckstrin homology domain containing, family F (with FYVE domain) member 1 JBrowse link 7 38,220,654 38,227,994 RGD:2290270
G Plk2 polo like kinase 2 JBrowse link 13 110,395,044 110,400,844 RGD:2290270
G Prkaa1 protein kinase, AMP-activated, alpha 1 catalytic subunit JBrowse link 15 5,143,861 5,181,899 RGD:2290270
G Prkaa2 protein kinase, AMP-activated, alpha 2 catalytic subunit JBrowse link 4 105,029,649 105,109,898 RGD:2290270
G Prkd1 protein kinase D1 JBrowse link 12 50,341,226 50,649,271 RGD:2290270
G Rnf152 ring finger protein 152 JBrowse link 1 105,276,917 105,356,991 RGD:2290270
G Rock1 Rho-associated coiled-coil containing protein kinase 1 JBrowse link 18 10,064,401 10,182,251 RGD:2290270
G Sh3bp4 SH3-domain binding protein 4 JBrowse link 1 89,070,333 89,155,087 RGD:2290270
G Sh3glb1 SH3-domain GRB2-like B1 (endophilin) JBrowse link 3 144,683,665 144,720,408 RGD:2290270
G Stk11 serine/threonine kinase 11 JBrowse link 10 80,115,767 80,130,679 RGD:2290270
G Svip small VCP/p97-interacting protein JBrowse link 7 51,997,161 52,006,018 RGD:2290270
G Tfeb transcription factor EB JBrowse link 17 47,737,037 47,792,416 RGD:2290270
G Ticam1 toll-like receptor adaptor molecule 1 JBrowse link 17 56,269,462 56,276,767 RGD:2290270
G Tlr9 toll-like receptor 9 JBrowse link 9 106,222,598 106,226,876 RGD:2290270
G Tmem59 transmembrane protein 59 JBrowse link 4 107,178,630 107,200,996 RGD:2290270
G Tpcn1 two pore channel 1 JBrowse link 5 120,534,157 120,588,678 RGD:2290270
G Trim12a tripartite motif-containing 12A JBrowse link 7 104,299,893 104,315,558 RGD:2290270
G Trim12c tripartite motif-containing 12C JBrowse link 7 104,338,754 104,353,358 RGD:2290270
G Trim14 tripartite motif-containing 14 JBrowse link 4 46,505,072 46,536,150 RGD:2290270
G Trim21 tripartite motif-containing 21 JBrowse link 7 102,557,920 102,565,482 RGD:2290270
G Trim27 tripartite motif-containing 27 JBrowse link 13 21,179,450 21,194,723 RGD:2290270
G Trim30a tripartite motif-containing 30A JBrowse link 7 104,409,025 104,465,193 RGD:2290270
G Trim30b tripartite motif-containing 30B JBrowse link 7 104,355,398 104,358,646 RGD:2290270
G Trim30c tripartite motif-containing 30C JBrowse link 7 104,379,117 104,400,852 RGD:2290270
G Trim30d tripartite motif-containing 30D JBrowse link 7 104,470,014 104,507,853 RGD:2290270
G Trim34a tripartite motif-containing 34A JBrowse link 7 104,244,448 104,262,244 RGD:2290270
G Trim34b tripartite motif-containing 34B JBrowse link 7 104,329,471 104,336,617 RGD:2290270
G Trim38 tripartite motif-containing 38 JBrowse link 13 23,778,500 23,791,731 RGD:2290270
G Trim5 tripartite motif-containing 5 JBrowse link 7 104,263,386 104,288,254 RGD:2290270
G Trim6 tripartite motif-containing 6 JBrowse link 7 104,218,795 104,235,152 RGD:2290270
G Trim65 tripartite motif-containing 65 JBrowse link 11 116,124,708 116,131,413 RGD:2290270
G Trim68 tripartite motif-containing 68 JBrowse link 7 102,677,579 102,687,335 RGD:2290270
G Trim8 tripartite motif-containing 8 JBrowse link 19 46,501,648 46,516,805 RGD:2290270
G Triml1 tripartite motif family-like 1 JBrowse link 8 43,129,806 43,180,494 RGD:2290270
G Triml2 tripartite motif family-like 2 JBrowse link 8 43,180,463 43,193,884 RGD:2290270
G Trp53inp1 transformation related protein 53 inducible nuclear protein 1 JBrowse link 4 11,156,441 11,174,379 RGD:2290270
G Trp53inp2 transformation related protein 53 inducible nuclear protein 2 JBrowse link 2 155,381,811 155,389,847 RGD:2290270
G Tsc2 TSC complex subunit 2 JBrowse link 17 24,595,816 24,632,676 RGD:2290270
G Ufl1 UFM1 specific ligase 1 JBrowse link 4 25,247,149 25,281,821 RGD:2290270
G Ulk1 unc-51 like kinase 1 JBrowse link 5 110,784,489 110,810,120 RGD:2290270
G Xbp1 X-box binding protein 1 JBrowse link 11 5,520,641 5,525,993 RGD:2290270
G Zc3h12a zinc finger CCCH type containing 12A JBrowse link 4 125,118,414 125,127,881 RGD:2290270
positive regulation of autophagy in response to ER overload term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2l11 BCL2-like 11 (apoptosis facilitator) JBrowse link 2 128,126,038 128,162,547 RGD:2290270
G Bid BH3 interacting domain death agonist JBrowse link 6 120,893,119 120,917,062 RGD:2290270
G Ddit3 DNA-damage inducible transcript 3 JBrowse link 10 127,290,793 127,296,291 RGD:2290270
positive regulation of autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bnip3 BCL2/adenovirus E1B interacting protein 3 JBrowse link 7 138,890,836 138,909,506 RGD:2290270
G Fbxo7 F-box protein 7 JBrowse link 10 86,020,449 86,051,873 RGD:2290270
G Hif1a hypoxia inducible factor 1, alpha subunit JBrowse link 12 73,901,324 73,947,554 RGD:2290270
G Htt huntingtin JBrowse link 5 34,761,721 34,912,534 RGD:2290270
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 17 10,840,359 12,063,370 RGD:2290270
positive regulation of autophagy of mitochondrion in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atpif1 ATPase inhibitory factor 1 JBrowse link 4 132,530,555 132,535,450 RGD:2290270
G Gba glucosidase, beta, acid JBrowse link 3 89,202,905 89,208,873 RGD:2290270
G Hk2 hexokinase 2 JBrowse link 6 82,725,025 82,774,454 RGD:2290270
G Mul1 mitochondrial ubiquitin ligase activator of NFKB 1 JBrowse link 4 138,434,660 138,442,265 RGD:2290270
G Pink1 PTEN induced putative kinase 1 JBrowse link 4 138,313,409 138,326,296 RGD:2290270
positive regulation of chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Plk3 polo like kinase 3 JBrowse link 4 117,128,655 117,133,963 RGD:2290270
positive regulation of lipophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adrb2 adrenergic receptor, beta 2 JBrowse link 18 62,177,713 62,179,981 RGD:2290270
G Htt huntingtin JBrowse link 5 34,761,721 34,912,534 RGD:2290270
G Sesn2 sestrin 2 JBrowse link 4 132,492,804 132,510,456 RGD:2290270
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 JBrowse link 13 53,332,748 53,377,417 RGD:2290270
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 JBrowse link 12 87,305,058 87,388,355 RGD:2290270
positive regulation of macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bnip3 BCL2/adenovirus E1B interacting protein 3 JBrowse link 7 138,890,836 138,909,506 RGD:2290270
G Bnip3l BCL2/adenovirus E1B interacting protein 3-like JBrowse link 14 66,985,238 67,008,877 RGD:2290270
G C9orf72 C9orf72, member of C9orf72-SMCR8 complex JBrowse link 4 35,191,285 35,226,153 RGD:2290270
G Dcn decorin JBrowse link 10 97,479,500 97,518,163 RGD:2290270
G Epm2a epilepsy, progressive myoclonic epilepsy, type 2 gene alpha JBrowse link 10 11,342,691 11,459,664 RGD:2290270
G Gnai3 guanine nucleotide binding protein (G protein), alpha inhibiting 3 JBrowse link 3 108,107,275 108,146,152 RGD:2290270
G Gpsm1 G-protein signalling modulator 1 (AGS3-like, C. elegans) JBrowse link 2 26,314,611 26,348,237 RGD:2290270
G Hif1a hypoxia inducible factor 1, alpha subunit JBrowse link 12 73,901,324 73,947,554 RGD:2290270
G Hmox1 heme oxygenase 1 JBrowse link 8 75,093,618 75,100,593 RGD:2290270
G Ikbkg inhibitor of kappaB kinase gamma JBrowse link X 74,393,233 74,456,792 RGD:2290270
G Il4 interleukin 4 JBrowse link 11 53,612,460 53,618,665 RGD:2290270
G Kdr kinase insert domain protein receptor JBrowse link 5 75,932,827 75,979,072 RGD:2290270
G Larp1 La ribonucleoprotein domain family, member 1 JBrowse link 11 57,973,418 58,062,034 RGD:2290270
G Map3k7 mitogen-activated protein kinase kinase kinase 7 JBrowse link 4 31,963,492 32,023,470 RGD:2290270
G Pafah1b2 platelet-activating factor acetylhydrolase, isoform 1b, subunit 2 JBrowse link 9 45,965,311 46,012,690 RGD:2290270
G Pim2 proviral integration site 2 JBrowse link X 7,878,306 7,883,432 RGD:2290270
G Pink1 PTEN induced putative kinase 1 JBrowse link 4 138,313,409 138,326,296 RGD:2290270
G Rab12 RAB12, member RAS oncogene family JBrowse link 17 66,494,512 66,519,750 RGD:2290270
G Rufy4 RUN and FYVE domain containing 4 JBrowse link 1 74,124,433 74,148,230 RGD:2290270
G Scoc short coiled-coil protein JBrowse link 8 83,434,492 83,458,436 RGD:2290270
G Sesn1 sestrin 1 JBrowse link 10 41,810,574 41,908,436 RGD:2290270
G Sesn2 sestrin 2 JBrowse link 4 132,492,804 132,510,456 RGD:2290270
G Sesn3 sestrin 3 JBrowse link 9 14,276,301 14,326,134 RGD:2290270
G Sirt1 sirtuin 1 JBrowse link 10 63,319,005 63,339,035 RGD:2290270
G Sting1 stimulator of interferon response cGAMP interactor 1 JBrowse link 18 35,733,678 35,740,554 RGD:2290270
G Supt5 suppressor of Ty 5, DSIF elongation factor subunit JBrowse link 7 28,314,891 28,338,804 RGD:2290270
G Tbk1 TANK-binding kinase 1 JBrowse link 10 121,546,455 121,586,794 RGD:2290270
G Trim13 tripartite motif-containing 13 JBrowse link 14 61,598,226 61,610,287 RGD:2290270
G Tsc1 TSC complex subunit 1 JBrowse link 2 28,640,993 28,691,172 RGD:2290270
G Tsc2 TSC complex subunit 2 JBrowse link 17 24,595,816 24,632,676 RGD:2290270
G Wac WW domain containing adaptor with coiled-coil JBrowse link 18 7,868,825 7,929,028 RGD:2290270
positive regulation of mitophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 17 10,840,359 12,063,370 RGD:2290270
G Vps13d vacuolar protein sorting 13D JBrowse link 4 144,871,045 145,195,037 RGD:2290270
positive regulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdc37 cell division cycle 37 JBrowse link 9 21,139,431 21,149,934 RGD:2290270
G Hdac6 histone deacetylase 6 JBrowse link X 7,930,116 7,948,047 RGD:2290270
G Huwe1 HECT, UBA and WWE domain containing 1 JBrowse link X 151,800,785 151,935,417 RGD:2290270
G Pink1 PTEN induced putative kinase 1 JBrowse link 4 138,313,409 138,326,296 RGD:2290270
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 17 10,840,359 12,063,370 RGD:2290270
G Tomm7 translocase of outer mitochondrial membrane 7 JBrowse link 5 23,838,944 23,844,145 RGD:2290270
positive regulation of xenophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link 2 32,925,215 32,961,654 RGD:2290270
G Mapk3 mitogen-activated protein kinase 3 JBrowse link 7 126,759,626 126,765,816 RGD:2290270
G Nod1 nucleotide-binding oligomerization domain containing 1 JBrowse link 6 54,923,942 54,972,674 RGD:2290270
G Nod2 nucleotide-binding oligomerization domain containing 2 JBrowse link 8 88,647,315 88,688,474 RGD:2290270
G Optn optineurin JBrowse link 2 5,020,521 5,064,399 RGD:2290270
G Ripk2 receptor (TNFRSF)-interacting serine-threonine kinase 2 JBrowse link 4 16,122,732 16,163,678 RGD:2290270
G Tbk1 TANK-binding kinase 1 JBrowse link 10 121,546,455 121,586,794 RGD:2290270
G Tlr2 toll-like receptor 2 JBrowse link 3 83,836,272 83,841,824 RGD:2290270
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg16l1 autophagy related 16-like 1 (S. cerevisiae) JBrowse link 1 87,756,007 87,792,428 RGD:2290270
G Atg5 autophagy related 5 JBrowse link 10 44,268,322 44,364,299 RGD:2290270
G Irgm1 immunity-related GTPase family M member 1 JBrowse link 11 48,865,245 48,871,420 RGD:9068941
G Irgm2 immunity-related GTPase family M member 2 JBrowse link 11 58,214,977 58,222,783 RGD:2290270
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 5 142,629,533 142,669,672 RGD:2290270
protein localization to phagophore assembly site term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg13 autophagy related 13 JBrowse link 2 91,674,612 91,710,597 RGD:2290270
G Atg16l1 autophagy related 16-like 1 (S. cerevisiae) JBrowse link 1 87,756,007 87,792,428 RGD:2290270
G Atg9a autophagy related 9A JBrowse link 1 75,180,861 75,192,010 RGD:2290270
G Atg9b autophagy related 9B JBrowse link 5 24,384,181 24,392,143 RGD:2290270
G Mfn2 mitofusin 2 JBrowse link 4 147,873,586 147,904,909 RGD:2290270
G Pacs2 phosphofurin acidic cluster sorting protein 2 JBrowse link 12 113,014,454 113,074,401 RGD:2290270
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 18 30,265,615 30,348,126 RGD:2290270
G Stx17 syntaxin 17 JBrowse link 4 48,124,906 48,186,507 RGD:2290270
G Trappc8 trafficking protein particle complex 8 JBrowse link 18 20,817,211 20,896,425 RGD:2290270
G Wdr45 WD repeat domain 45 JBrowse link X 7,721,987 7,728,201 RGD:2290270
G Wdr45b WD repeat domain 45B JBrowse link 11 121,327,203 121,354,447 RGD:2290270
G Wipi1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 11 109,573,521 109,611,389 RGD:2290270
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 5 142,629,533 142,669,672 RGD:2290270
protein targeting to lysosome involved in chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hspa8 heat shock protein 8 JBrowse link 9 40,801,276 40,805,202 RGD:2290270
G Lamp2 lysosomal-associated membrane protein 2 JBrowse link X 38,399,647 38,456,460 RGD:2290270
protein targeting to vacuole involved in autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 5 144,876,495 144,965,899 RGD:2290270
regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C9orf72 C9orf72, member of C9orf72-SMCR8 complex JBrowse link 4 35,191,285 35,226,153 RGD:2290270
G Ift20 intraflagellar transport 20 JBrowse link 11 78,536,361 78,541,732 RGD:2290270
G Ift88 intraflagellar transport 88 JBrowse link 14 57,424,064 57,517,936 RGD:2290270
G Mtmr3 myotubularin related protein 3 JBrowse link 11 4,480,867 4,594,863 RGD:2290270
G Nprl2 NPR2 like, GATOR1 complex subunit JBrowse link 9 107,542,177 107,545,706 RGD:2290270
G Nprl3 nitrogen permease regulator-like 3 JBrowse link 11 32,231,963 32,267,707 RGD:2290270
G Pikfyve phosphoinositide kinase, FYVE type zinc finger containing JBrowse link 1 65,186,640 65,278,696 RGD:2290270
G Rab1b RAB1B, member RAS oncogene family JBrowse link 19 5,099,207 5,106,996 RGD:2290270
G Rnf5 ring finger protein 5 JBrowse link 17 34,601,099 34,603,561 RGD:2290270
G Tbc1d12 TBC1D12: TBC1 domain family, member 12 JBrowse link 19 38,836,579 38,919,670 RGD:2290270
G Tbc1d14 TBC1 domain family, member 14 JBrowse link 5 36,490,604 36,586,271 RGD:2290270
G Ubqln2 ubiquilin 2 JBrowse link X 153,498,232 153,501,562 RGD:2290270
regulation of autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clec16a C-type lectin domain family 16, member A JBrowse link 16 10,545,309 10,744,878 RGD:2290270
G Cln3 ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) JBrowse link 7 126,571,207 126,585,817 RGD:2290270
G Tbc1d25 TBC1 domain family, member 25 JBrowse link X 8,154,470 8,176,181 RGD:2290270
regulation of autophagosome size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp13a2 ATPase type 13A2 JBrowse link 4 140,986,216 141,007,330 RGD:2290270
G Cln3 ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) JBrowse link 7 126,571,207 126,585,817 RGD:2290270
regulation of autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acer2 alkaline ceramidase 2 JBrowse link 4 86,874,348 86,932,524 RGD:2290270
G Atm ataxia telangiectasia mutated JBrowse link 9 53,437,122 53,536,828 RGD:2290270
G Bcl2 B cell leukemia/lymphoma 2 JBrowse link 1 106,538,176 106,714,290 RGD:2290270
G Bok BCL2-related ovarian killer JBrowse link 1 93,685,575 93,695,770 RGD:2290270
G C9orf72 C9orf72, member of C9orf72-SMCR8 complex JBrowse link 4 35,191,285 35,226,153 RGD:2290270
G Casp1 caspase 1 JBrowse link 9 5,298,517 5,307,281 RGD:2290270
G Chmp4b charged multivesicular body protein 4B JBrowse link 2 154,657,026 154,694,783 RGD:2290270
G Cisd2 CDGSH iron sulfur domain 2 JBrowse link 3 135,406,412 135,424,039 RGD:2290270
G Cln3 ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) JBrowse link 7 126,571,207 126,585,817 RGD:2290270
G Ddit3 DNA-damage inducible transcript 3 JBrowse link 10 127,290,793 127,296,291 RGD:2290270
G Depdc5 DEP domain containing 5 JBrowse link 5 32,863,646 32,994,233 RGD:2290270
G Depp1 DEPP1 autophagy regulator JBrowse link 6 116,650,684 116,652,847 RGD:2290270
G Dram1 DNA-damage regulated autophagy modulator 1 JBrowse link 10 88,322,801 88,364,359 RGD:2290270
G Dram2 DNA-damage regulated autophagy modulator 2 JBrowse link 3 106,547,798 106,575,341 RGD:2290270
G Ercc4 excision repair cross-complementing rodent repair deficiency, complementation group 4 JBrowse link 16 13,109,366 13,152,009 RGD:2290270
G Fbxl2 F-box and leucine-rich repeat protein 2 JBrowse link 9 113,958,557 114,026,803 RGD:2290270
G Fbxw7as1 F-box and WD-40 domain protein 7 antisense transcript 1 JBrowse link 3 84,965,056 84,965,580 RGD:2290270
G Gpr137 G protein-coupled receptor 137 JBrowse link 19 6,938,057 6,942,450 RGD:2290270
G Gpr137b G protein-coupled receptor 137B JBrowse link 13 13,357,620 13,393,644 RGD:2290270
G Ifi204 interferon activated gene 204 JBrowse link 1 173,747,293 173,767,069 RGD:9068941
G Iigp1 interferon inducible GTPase 1 JBrowse link 18 60,373,616 60,392,634 RGD:2290270
G Kat8 K(lysine) acetyltransferase 8 JBrowse link 7 127,912,517 127,925,838 RGD:2290270
G Keap1 kelch-like ECH-associated protein 1 JBrowse link 9 21,229,730 21,239,332 RGD:2290270
G Lamp3 lysosomal-associated membrane protein 3 JBrowse link 16 19,653,381 19,706,365 RGD:2290270
G Lmx1b LIM homeobox transcription factor 1 beta JBrowse link 2 33,560,965 33,641,208 RGD:2290270
G Lrrk2 leucine-rich repeat kinase 2 JBrowse link 15 91,672,791 91,816,124 RGD:2290270
G Mapk15 mitogen-activated protein kinase 15 JBrowse link 15 75,993,732 75,999,153 RGD:2290270
G Mapt microtubule-associated protein tau JBrowse link 11 104,229,409 104,332,090 RGD:2290270
G Mfsd8 major facilitator superfamily domain containing 8 JBrowse link 3 40,818,065 40,846,880 RGD:2290270
G Mtcl1 microtubule crosslinking factor 1 JBrowse link 17 66,336,980 66,449,806 RGD:2290270
G Mtmr3 myotubularin related protein 3 JBrowse link 11 4,480,867 4,594,863 RGD:2290270
G Mtmr4 myotubularin related protein 4 JBrowse link 11 87,591,954 87,616,302 RGD:2290270
G Mtor mechanistic target of rapamycin kinase JBrowse link 4 148,448,582 148,557,685 RGD:2290270
G Nlrp6 NLR family, pyrin domain containing 6 JBrowse link 7 140,920,902 140,929,192 RGD:2290270
G Nupr1 nuclear protein transcription regulator 1 JBrowse link 7 126,623,246 126,625,470 RGD:9068941
G Pik3r2 phosphoinositide-3-kinase regulatory subunit 2 JBrowse link 8 70,768,176 70,776,712 RGD:2290270
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase, type II, alpha JBrowse link 2 18,842,255 18,998,291 RGD:2290270
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase, type II, beta JBrowse link 11 97,715,157 97,744,704 RGD:2290270
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase, type II, gamma JBrowse link 10 127,197,067 127,211,628 RGD:2290270
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 17 10,840,359 12,063,370 RGD:2290270
G Pycard PYD and CARD domain containing JBrowse link 7 127,991,373 127,993,867 RGD:2290270
G Rab39b RAB39B, member RAS oncogene family JBrowse link X 75,572,045 75,578,231 RGD:2290270
G Rab8a RAB8A, member RAS oncogene family JBrowse link 8 72,161,200 72,181,366 RGD:2290270
G Rmc1 regulator of MON1-CCZ1 JBrowse link 18 12,168,689 12,198,675 RGD:2290270
G Rptor regulatory associated protein of MTOR, complex 1 JBrowse link 11 119,602,905 119,899,591 RGD:2290270
G Rraga Ras-related GTP binding A JBrowse link 4 86,575,673 86,577,285 RGD:2290270
G Rragb Ras-related GTP binding B JBrowse link X 153,137,644 153,190,192 RGD:2290270
G Rragc Ras-related GTP binding C JBrowse link 4 123,917,433 123,936,997 RGD:2290270
G Rragd Ras-related GTP binding D JBrowse link 4 32,982,998 33,022,180 RGD:2290270
G Smcr8 Smith-Magenis syndrome chromosome region, candidate 8 homolog (human) JBrowse link 11 60,777,525 60,788,287 RGD:2290270
G Soga1 suppressor of glucose, autophagy associated 1 JBrowse link 2 157,010,441 157,079,667 RGD:2290270
G Soga3 SOGA family member 3 JBrowse link 10 29,143,996 29,199,630 RGD:2290270
G Tmem150a transmembrane protein 150A JBrowse link 6 72,355,483 72,359,762 RGD:2290270
G Tmem150b transmembrane protein 150B JBrowse link 7 4,706,832 4,725,251 RGD:2290270
G Tmem150c transmembrane protein 150C JBrowse link 5 100,077,872 100,165,607 RGD:2290270
G Tpcn2 two pore segment channel 2 JBrowse link 7 145,181,633 145,284,011 RGD:2290270
G Trib3 tribbles pseudokinase 3 JBrowse link 2 152,337,425 152,344,060 RGD:2290270
G Trp53inp1 transformation related protein 53 inducible nuclear protein 1 JBrowse link 4 11,156,441 11,174,379 RGD:2290270
G Usp10 ubiquitin specific peptidase 10 JBrowse link 8 119,910,360 119,957,560 RGD:2290270
G Usp13 ubiquitin specific peptidase 13 (isopeptidase T-3) JBrowse link 3 32,816,283 32,938,075 RGD:2290270
G Usp33 ubiquitin specific peptidase 33 JBrowse link 3 152,346,184 152,393,617 RGD:2290270
G Vps29 VPS29 retromer complex component JBrowse link 5 122,354,328 122,364,984 RGD:9068941
G Wdr24 WD repeat domain 24 JBrowse link 17 25,823,627 25,828,730 RGD:2290270
G Wdr41 WD repeat domain 41 JBrowse link 13 94,976,329 95,023,316 RGD:2290270
G Xbp1 X-box binding protein 1 JBrowse link 11 5,520,641 5,525,993 RGD:2290270
G Xpa xeroderma pigmentosum, complementation group A JBrowse link 4 46,175,220 46,196,344 RGD:2290270
G Zmpste24 zinc metallopeptidase, STE24 JBrowse link 4 121,059,237 121,098,249 RGD:2290270
regulation of autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bnip3l BCL2/adenovirus E1B interacting protein 3-like JBrowse link 14 66,985,238 67,008,877 RGD:2290270
G Csnk2a2 casein kinase 2, alpha prime polypeptide JBrowse link 8 95,446,096 95,488,868 RGD:9068941
G Cttn cortactin JBrowse link 7 144,435,724 144,471,560 RGD:2290270
G Dnm1l dynamin 1-like JBrowse link 16 16,312,228 16,359,038 RGD:2290270
G Fbxw7 F-box and WD-40 domain protein 7 JBrowse link 3 84,814,990 84,979,198 RGD:2290270
G Fzd5 frizzled class receptor 5 JBrowse link 1 64,730,558 64,737,750 RGD:9068941
G Gsk3a glycogen synthase kinase 3 alpha JBrowse link 7 25,228,258 25,237,851 RGD:2290270
G Parl presenilin associated, rhomboid-like JBrowse link 16 20,279,820 20,302,395 RGD:2290270
G Srebf1 sterol regulatory element binding transcription factor 1 JBrowse link 11 60,199,084 60,224,186 RGD:2290270
G Srebf2 sterol regulatory element binding factor 2 JBrowse link 15 82,147,269 82,205,379 RGD:9068941
G Usp36 ubiquitin specific peptidase 36 JBrowse link 11 118,259,651 118,290,260 RGD:9068941
G Vdac1 voltage-dependent anion channel 1 JBrowse link 11 52,360,851 52,389,397 RGD:2290270
regulation of chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gfap glial fibrillary acidic protein JBrowse link 11 102,887,336 102,897,200 RGD:2290270
regulation of macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp13a2 ATPase type 13A2 JBrowse link 4 140,986,216 141,007,330 RGD:2290270
G Atp6v0a1 ATPase, H+ transporting, lysosomal V0 subunit A1 JBrowse link 11 101,009,422 101,063,719 RGD:2290270
G Hdac6 histone deacetylase 6 JBrowse link X 7,930,116 7,948,047 RGD:2290270
G Prkaa2 protein kinase, AMP-activated, alpha 2 catalytic subunit JBrowse link 4 105,029,649 105,109,898 RGD:2290270
G Ubqln1 ubiquilin 1 JBrowse link 13 58,176,156 58,215,653 RGD:2290270
G Ubqln2 ubiquilin 2 JBrowse link X 153,498,232 153,501,562 RGD:2290270
reticulophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddrgk1 DDRGK domain containing 1 JBrowse link 2 130,654,033 130,664,654 RGD:2290270
G Rb1cc1 RB1-inducible coiled-coil 1 JBrowse link 1 6,214,634 6,276,375 RGD:2290270
G Retreg1 reticulophagy regulator 1 JBrowse link 15 25,843,298 25,973,696 RGD:2290270
G Sting1 stimulator of interferon response cGAMP interactor 1 JBrowse link 18 35,733,678 35,740,554 RGD:2290270
G Tex264 testis expressed gene 264 JBrowse link 9 106,658,746 106,685,952 RGD:2290270
G Uba5 ubiquitin-like modifier activating enzyme 5 JBrowse link 9 104,046,587 104,063,176 RGD:2290270
G Ufc1 ubiquitin-fold modifier conjugating enzyme 1 JBrowse link 1 171,288,564 171,295,002 RGD:2290270
G Ufl1 UFM1 specific ligase 1 JBrowse link 4 25,247,149 25,281,821 RGD:2290270
G Ufm1 ubiquitin-fold modifier 1 JBrowse link 3 53,853,376 53,863,807 RGD:2290270
selective autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sqstm1 sequestosome 1 JBrowse link 11 50,200,152 50,210,820 RGD:2290270
substrate localization to autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 5 144,876,495 144,965,899 RGD:2290270
suppression by virus of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg7 autophagy related 7 JBrowse link 6 114,643,127 114,860,604 RGD:2290270
xenophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg16l1 autophagy related 16-like 1 (S. cerevisiae) JBrowse link 1 87,756,007 87,792,428 RGD:2290270
G Calcoco2 calcium binding and coiled-coil domain 2 JBrowse link 11 96,098,916 96,124,560 RGD:2290270
G Lgals8 lectin, galactose binding, soluble 8 JBrowse link 13 12,439,402 12,464,977 RGD:2290270
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 5 142,629,533 142,669,672 RGD:2290270

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23163
    cellular process 17053
      process utilizing autophagic mechanism 442
        autophagy + 442
        cytoplasm to vacuole transport by the Cvt pathway + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.