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ONTOLOGY REPORT - ANNOTATIONS


Term:process utilizing autophagic mechanism
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Accession:GO:0061919 term browser browse the term
Definition:A cellular process involving delivery of a portion of the cytoplasm to lysosomes or to the plant or fungal vacuole that does not involve direct transport through the endocytic or vacuolar protein sorting (Vps) pathways. This process typically leads to degradation of the cargo; however, it can also be used to deliver resident proteins, such as in the cytoplasm-to-vacuole targeting (Cvt) pathway.


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aggrephagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACBD5 acyl-CoA binding domain containing 5 JBrowse link 10 48,883,116 48,922,377 RGD:9068941
G ATG5 autophagy related 5 JBrowse link 1 72,343,950 72,520,402 RGD:14298760
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma JBrowse link 10 15,371,182 15,379,067 RGD:14298760
G SQSTM1 sequestosome 1 JBrowse link 2 78,752,768 78,763,998 RGD:14298760
G UBQLN1 ubiquilin 1 JBrowse link 10 31,275,916 31,317,521 RGD:14298760
G WDFY3 WD repeat and FYVE domain containing 3 JBrowse link 8 133,665,585 133,939,860 RGD:14298760
G WDR81 WD repeat domain 81 JBrowse link 12 47,921,818 47,933,782 RGD:14298760
autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 2 15,935,354 16,119,082 RGD:14298760
G ATG101 autophagy related 101 JBrowse link 5 17,418,085 17,425,770 RGD:14298760
G ATG12 autophagy related 12 JBrowse link 2 119,948,443 119,965,702 RGD:14298760
G ATG13 autophagy related 13 JBrowse link 2 15,856,859 15,916,122 RGD:14298760
G ATG14 autophagy related 14 JBrowse link 1 184,701,020 184,743,752 RGD:14298760
G ATG16L1 autophagy related 16 like 1 JBrowse link 15 133,651,294 133,693,472 RGD:14298760
G ATG16L2 autophagy related 16 like 2 JBrowse link 9 7,346,973 7,360,189 RGD:14298760
RGD:9068941
G ATG2A autophagy related 2A JBrowse link 2 7,261,819 7,282,614 RGD:14298760
G ATG2B autophagy related 2B JBrowse link 7 117,506,298 117,586,651 RGD:14298760
G ATG3 autophagy related 3 JBrowse link 13 147,279,110 147,309,597 RGD:14298760
G ATG4B autophagy related 4B cysteine peptidase JBrowse link 15 140,223,903 140,245,590 RGD:9068941
G ATG5 autophagy related 5 JBrowse link 1 72,343,950 72,520,402 RGD:14298760
G ATG7 autophagy related 7 JBrowse link 13 67,301,756 67,699,141 RGD:14298760
G ATG9A autophagy related 9A JBrowse link 15 121,254,355 121,265,564 RGD:14298760
G ATG9B autophagy related 9B JBrowse link 18 6,200,246 6,208,988 RGD:14298760
G BAG3 BAG cochaperone 3 JBrowse link 14 129,510,240 129,533,998 RGD:9068941
G BECN1 beclin 1 JBrowse link 12 20,041,914 20,054,249 RGD:14298760
G BECN2 beclin 2 JBrowse link 10 15,388,712 15,390,250 RGD:14298760
G CTSD cathepsin D JBrowse link 2 1,188,548 1,197,642 RGD:9068941
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 4 110,881,770 110,954,092 RGD:14298760
G EMC6 ER membrane protein complex subunit 6 JBrowse link 12 49,759,153 49,760,069 RGD:14298760
G EPM2A EPM2A glucan phosphatase, laforin JBrowse link 1 19,806,363 19,893,350 RGD:9068941
G GABARAPL1 GABA type A receptor associated protein like 1 JBrowse link 5 61,758,127 61,767,427 RGD:14298760
G GABARAPL2 GABA type A receptor associated protein like 2 JBrowse link 6 12,122,219 12,132,986 RGD:14298760
G LOC102158581 gamma-aminobutyric acid receptor-associated protein pseudogene JBrowse link 1 76,675,741 76,676,338 RGD:14298760
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 17 37,957,830 37,959,505 RGD:14298760
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 6 1,919,879 1,941,069 RGD:14298760
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma JBrowse link 10 15,371,182 15,379,067 RGD:14298760
G NSFL1C NSFL1 cofactor JBrowse link 17 33,869,487 33,890,873 RGD:14298760
G PACS2 phosphofurin acidic cluster sorting protein 2 RGD:9068941
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 6 125,890,598 126,038,753 RGD:14298760
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 1 5,698,508 6,731,132 RGD:14298760
G PSEN1 presenilin 1 JBrowse link 7 96,478,179 96,567,884 RGD:14298760
G RAB19 RAB19, member RAS oncogene family JBrowse link 18 9,367,239 9,391,097 RGD:14298760
G RAB1A RAB1A, member RAS oncogene family JBrowse link 3 76,837,673 76,868,156 RGD:14298760
G RAB23 RAB23, member RAS oncogene family JBrowse link 7 28,632,065 28,658,958 RGD:14298760
G RAB33B RAB33B, member RAS oncogene family JBrowse link 8 87,545,106 87,570,545 RGD:14298760
G RAB43 RAB43, member RAS oncogene family JBrowse link 13 71,564,250 71,596,318 RGD:14298760
G RAB7A RAB7A, member RAS oncogene family JBrowse link 13 71,777,422 71,886,758 RGD:14298760
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 4 77,593,204 77,649,551 RGD:14298760
G RUFY4 RUN and FYVE domain containing 4 JBrowse link 15 120,193,657 120,213,625 RGD:14298760
G STING1 stimulator of interferon response cGAMP interactor 1 JBrowse link 2 141,359,402 141,367,222 RGD:14298760
G STX12 syntaxin 12 JBrowse link 6 84,918,827 84,960,235 RGD:14298760
G SYNPO2 synaptopodin 2 JBrowse link 8 104,677,580 104,844,169 RGD:9068941
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 JBrowse link 2 4,844,627 4,860,562 RGD:14298760
G TMEM41B transmembrane protein 41B JBrowse link 9 223,973 249,813 RGD:14298760
G TP53INP1 tumor protein p53 inducible nuclear protein 1 JBrowse link 4 41,747,654 41,766,688 RGD:14298760
G TP53INP2 tumor protein p53 inducible nuclear protein 2 JBrowse link 17 38,104,189 38,113,167 RGD:14298760
G TRAPPC8 trafficking protein particle complex 8 JBrowse link 6 115,692,509 115,786,668 RGD:14298760
G UBQLN1 ubiquilin 1 JBrowse link 10 31,275,916 31,317,521 RGD:14298760
G UBQLN2 ubiquilin 2 JBrowse link X 48,948,062 48,951,392 RGD:14298760
G UBXN2A UBX domain protein 2A JBrowse link 3 114,667,278 114,714,185 RGD:14298760
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 14 23,423,693 23,448,130 RGD:9068941
G VMP1 vacuole membrane protein 1 RGD:14298760
G WDR45 WD repeat domain 45 JBrowse link X 43,150,691 43,155,981 RGD:14298760
G WDR45B WD repeat domain 45B JBrowse link 12 522,762 547,333 RGD:14298760
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 12 11,715,332 11,752,009 RGD:14298760
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 3 3,800,170 3,830,973 RGD:14298760
autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 3 18,433,564 18,450,296 RGD:14298760
G EPG5 ectopic P-granules autophagy protein 5 homolog JBrowse link 1 95,493,779 95,616,794 RGD:14298760
G LAMP2 lysosomal associated membrane protein 2 JBrowse link X 98,586,718 98,623,939 RGD:14298760
G LIX1 limb and CNS expressed 1 JBrowse link 2 103,741,379 103,801,879 RGD:14298760
G LIX1L limb and CNS expressed 1 like JBrowse link 4 99,384,293 99,403,554 RGD:14298760
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 17 37,957,830 37,959,505 RGD:14298760
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 6 1,919,879 1,941,069 RGD:14298760
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma JBrowse link 10 15,371,182 15,379,067 RGD:14298760
G MCOLN1 mucolipin 1 JBrowse link 2 71,602,888 71,613,331 RGD:14298760
G MFSD8 major facilitator superfamily domain containing 8 JBrowse link 8 96,925,063 96,972,390 RGD:14298760
G RUBCNL rubicon like autophagy enhancer JBrowse link 11 20,995,439 21,036,429 RGD:14298760
G SNAP29 synaptosome associated protein 29 JBrowse link 14 50,492,187 50,511,475 RGD:9068941
G SNAPIN SNAP associated protein JBrowse link 4 95,987,524 95,989,527 RGD:14298760
G SNX14 sorting nexin 14 JBrowse link 1 54,460,645 54,547,204 RGD:9068941
G STX17 syntaxin 17 JBrowse link 1 241,657,463 241,785,270 RGD:14298760
G TECPR1 tectonin beta-propeller repeat containing 1 JBrowse link 3 5,414,071 5,442,953 RGD:14298760
G UBQLN1 ubiquilin 1 JBrowse link 10 31,275,916 31,317,521 RGD:14298760
G UVRAG UV radiation resistance associated JBrowse link 9 10,088,779 10,370,857 RGD:14298760
G VAMP7 vesicle associated membrane protein 7 JBrowse link X 125,863,266 125,917,232 RGD:9068941
G VAMP8 vesicle associated membrane protein 8 JBrowse link 3 59,187,900 59,193,165 RGD:9068941
G VCP valosin containing protein JBrowse link 1 235,854,532 235,869,712 RGD:14298760
G VIPAS39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog JBrowse link 7 100,482,953 100,510,164 RGD:9068941
G VPS16 VPS16 core subunit of CORVET and HOPS complexes JBrowse link 17 32,803,596 32,825,974 RGD:14298760
G VPS33A VPS33A core subunit of CORVET and HOPS complexes JBrowse link 14 30,469,003 30,496,626 RGD:9068941
G VPS33B VPS33B late endosome and lysosome associated JBrowse link 7 55,840,612 55,865,045 RGD:9068941
G VTI1B vesicle transport through interaction with t-SNAREs 1B JBrowse link 7 91,386,020 91,413,480 RGD:9068941
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 3 3,800,170 3,830,973 RGD:9068941
autophagosome membrane docking term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG14 autophagy related 14 JBrowse link 1 184,701,020 184,743,752 RGD:14298760
G SNAP29 synaptosome associated protein 29 JBrowse link 14 50,492,187 50,511,475 RGD:14298760
G STX17 syntaxin 17 JBrowse link 1 241,657,463 241,785,270 RGD:14298760
G VAMP8 vesicle associated membrane protein 8 JBrowse link 3 59,187,900 59,193,165 RGD:14298760
autophagosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 6 75,618,317 75,638,591 RGD:9068941
G GBA glucosylceramidase beta JBrowse link 4 94,583,905 94,606,689 RGD:14298760
G PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha JBrowse link 2 41,829,969 42,024,062 RGD:9068941
G PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta JBrowse link 9 65,073,728 65,154,861 RGD:14298760
autophagosome-endosome fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RUBCNL rubicon like autophagy enhancer JBrowse link 11 20,995,439 21,036,429 RGD:14298760
autophagosome-lysosome fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 6 75,618,317 75,638,591 RGD:9068941
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 3 18,433,564 18,450,296 RGD:14298760
G RUBCNL rubicon like autophagy enhancer JBrowse link 11 20,995,439 21,036,429 RGD:14298760
autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 2 15,935,354 16,119,082 RGD:14298760
G ANXA7 annexin A7 JBrowse link 14 76,205,238 76,234,646 RGD:14298760
G ARSA arylsulfatase A JBrowse link 5 107,103 110,330 RGD:9068941
G ARSB arylsulfatase B JBrowse link 2 87,614,938 87,779,553 RGD:9068941
G ATG10 autophagy related 10 JBrowse link 2 90,436,795 90,665,383 RGD:14298760
G ATG12 autophagy related 12 JBrowse link 2 119,948,443 119,965,702 RGD:9068941
G ATG14 autophagy related 14 JBrowse link 1 184,701,020 184,743,752 RGD:9068941
G ATG16L2 autophagy related 16 like 2 JBrowse link 9 7,346,973 7,360,189 RGD:9068941
G ATG2A autophagy related 2A JBrowse link 2 7,261,819 7,282,614 RGD:14298760
G ATG2B autophagy related 2B JBrowse link 7 117,506,298 117,586,651 RGD:14298760
G ATG3 autophagy related 3 JBrowse link 13 147,279,110 147,309,597 RGD:14298760
G ATG4A autophagy related 4A cysteine peptidase JBrowse link X 88,545,924 88,633,328 RGD:14298760
G ATG4B autophagy related 4B cysteine peptidase JBrowse link 15 140,223,903 140,245,590 RGD:14298760
G ATG4C autophagy related 4C cysteine peptidase JBrowse link 6 149,560,318 149,691,959 RGD:14298760
G ATG4D autophagy related 4D cysteine peptidase JBrowse link 2 69,320,313 69,328,522 RGD:14298760
G ATG5 autophagy related 5 JBrowse link 1 72,343,950 72,520,402 RGD:14298760
G ATG7 autophagy related 7 JBrowse link 13 67,301,756 67,699,141 RGD:14298760
G ATG9A autophagy related 9A JBrowse link 15 121,254,355 121,265,564 RGD:14298760
G ATG9B autophagy related 9B JBrowse link 18 6,200,246 6,208,988 RGD:14298760
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 6 75,618,317 75,638,591 RGD:9068941
G BECN1 beclin 1 JBrowse link 12 20,041,914 20,054,249 RGD:14298760
G BECN2 beclin 2 JBrowse link 10 15,388,712 15,390,250 RGD:9068941
G C10H9orf72 chromosome 10 C9orf72 homolog JBrowse link 10 38,389,366 38,415,903 RGD:14298760
G C6H19orf12 chromosome 6 C19orf12 homolog JBrowse link 6 39,813,644 39,825,069 RGD:14298760
G CHMP4B charged multivesicular body protein 4B JBrowse link 17 37,285,422 37,334,103 RGD:14298760
G CTSB cathepsin B JBrowse link 14 15,014,139 15,035,081 RGD:9068941
G DRD2 dopamine receptor D2 JBrowse link 9 41,068,618 41,135,262 RGD:9068941
G DRD3 dopamine receptor D3 JBrowse link 13 145,769,294 145,817,997 RGD:9068941
G EI24 EI24 autophagy associated transmembrane protein JBrowse link 9 52,704,560 52,724,966 RGD:9068941
G EPG5 ectopic P-granules autophagy protein 5 homolog JBrowse link 1 95,493,779 95,616,794 RGD:14298760
G EPM2A EPM2A glucan phosphatase, laforin JBrowse link 1 19,806,363 19,893,350 RGD:9068941
G FOXO1 forkhead box O1 JBrowse link 11 15,317,222 15,410,059 RGD:14298760
G GABARAP GABA type A receptor-associated protein JBrowse link 12 52,596,130 52,598,166 RGD:14298760
G GABARAPL2 GABA type A receptor associated protein like 2 JBrowse link 6 12,122,219 12,132,986 RGD:14298760
G GBA glucosylceramidase beta JBrowse link 4 94,583,905 94,606,689 RGD:14298760
G HMGB1 high mobility group box 1 JBrowse link 11 7,195,556 7,321,071 RGD:14298760
G ITGB4 integrin subunit beta 4 JBrowse link 12 5,651,292 5,685,601 RGD:9068941
G LAMP2 lysosomal associated membrane protein 2 JBrowse link X 98,586,718 98,623,939 RGD:9068941
G LIX1 limb and CNS expressed 1 JBrowse link 2 103,741,379 103,801,879 RGD:14298760
G LIX1L limb and CNS expressed 1 like JBrowse link 4 99,384,293 99,403,554 RGD:14298760
G LOC733579 tripartite motif protein TRIM5 JBrowse link 9 4,157,290 4,170,233 RGD:9068941
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 17 37,957,830 37,959,505 RGD:9068941
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 6 1,919,879 1,941,069 RGD:14298760
G NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1 JBrowse link 7 13,816,243 13,817,644 RGD:9068941
G NPC1 NPC intracellular cholesterol transporter 1 JBrowse link 6 108,403,126 108,450,486 RGD:9068941
G NRBF2 nuclear receptor binding factor 2 JBrowse link 14 66,590,307 66,629,573 RGD:14298760
G OPTN optineurin JBrowse link 10 48,532,029 48,582,952 RGD:14298760
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 6 125,890,598 126,038,753 RGD:9068941
G PMP22 peripheral myelin protein 22 JBrowse link 12 58,679,773 58,734,195 RGD:9068941
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 16 25,745,902 25,783,524 RGD:14298760
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 6 155,683,392 155,754,283 RGD:14298760
G PSEN1 presenilin 1 JBrowse link 7 96,478,179 96,567,884 RGD:9068941
G RAB1A RAB1A, member RAS oncogene family JBrowse link 3 76,837,673 76,868,156 RGD:14298760
G RAB1B RAB1B, member RAS oncogene family JBrowse link 2 6,110,438 6,116,443 RGD:14298760
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 4 77,593,204 77,649,551 RGD:9068941
G S100A8 S100 calcium binding protein A8 JBrowse link 4 96,209,670 96,210,603 RGD:14298760
G S100A9 S100 calcium binding protein A9 JBrowse link 4 96,236,114 96,238,989 RGD:9068941
G SQSTM1 sequestosome 1 JBrowse link 2 78,752,768 78,763,998 RGD:9068941
G SRPX sushi repeat containing protein X-linked JBrowse link X 34,075,577 34,198,462 RGD:14298760
G SYT11 synaptotagmin 11 JBrowse link 4 94,139,345 94,163,091 RGD:14298760
G TBC1D5 TBC1 domain family member 5 JBrowse link 13 4,191,544 4,738,448 RGD:9068941
G TECPR1 tectonin beta-propeller repeat containing 1 JBrowse link 3 5,414,071 5,442,953 RGD:9068941
G TMBIM6 transmembrane BAX inhibitor motif containing 6 JBrowse link 5 15,674,028 15,692,944 RGD:14298760
G TMEM59 transmembrane protein 59 JBrowse link 6 158,261,936 158,290,465 RGD:14298760
G TMEM74 transmembrane protein 74 JBrowse link 4 28,722,243 28,727,007 RGD:14298760
G TP53 tumor protein p53 JBrowse link 12 52,939,643 52,953,786 RGD:14298760
G TRAPPC4 trafficking protein particle complex 4 JBrowse link 9 46,242,196 46,246,344 RGD:9068941
G TRIM17 tripartite motif containing 17 JBrowse link 2 51,726,854 51,732,075 RGD:14298760
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 14 23,423,693 23,448,130 RGD:14298760
G ULK2 unc-51 like autophagy activating kinase 2 JBrowse link 12 59,806,904 59,878,398 RGD:9068941
G UMOD uromodulin JBrowse link 3 25,473,048 25,492,286 RGD:9068941
G UVRAG UV radiation resistance associated JBrowse link 9 10,088,779 10,370,857 RGD:9068941
G VCP valosin containing protein JBrowse link 1 235,854,532 235,869,712 RGD:14298760
G VMP1 vacuole membrane protein 1 RGD:14298760
G VPS11 VPS11 core subunit of CORVET and HOPS complexes JBrowse link 9 46,285,718 46,297,465 RGD:14298760
G VPS13A vacuolar protein sorting 13 homolog A JBrowse link 1 230,069,339 230,331,343 RGD:14298760
G VPS39 VPS39 subunit of HOPS complex JBrowse link 1 129,144,338 129,198,760 RGD:14298760
G VPS51 VPS51 subunit of GARP complex JBrowse link 2 7,081,607 7,094,898 RGD:14298760
G VTI1A vesicle transport through interaction with t-SNAREs 1A JBrowse link 14 122,848,727 123,217,568 RGD:14298760
G WDR45 WD repeat domain 45 JBrowse link X 43,150,691 43,155,981 RGD:14298760
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 12 11,715,332 11,752,009 RGD:14298760
autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 2 15,935,354 16,119,082 RGD:9068941
G ATG12 autophagy related 12 JBrowse link 2 119,948,443 119,965,702 RGD:14298760
G ATG13 autophagy related 13 JBrowse link 2 15,856,859 15,916,122 RGD:14298760
G ATG2A autophagy related 2A JBrowse link 2 7,261,819 7,282,614 RGD:14298760
G ATG2B autophagy related 2B JBrowse link 7 117,506,298 117,586,651 RGD:14298760
G ATG3 autophagy related 3 JBrowse link 13 147,279,110 147,309,597 RGD:14298760
G ATG5 autophagy related 5 JBrowse link 1 72,343,950 72,520,402 RGD:14298760
G ATG7 autophagy related 7 JBrowse link 13 67,301,756 67,699,141 RGD:14298760
G ATG9A autophagy related 9A JBrowse link 15 121,254,355 121,265,564 RGD:14298760
G ATG9B autophagy related 9B JBrowse link 18 6,200,246 6,208,988 RGD:14298760
G BECN1 beclin 1 JBrowse link 12 20,041,914 20,054,249 RGD:9068941
G CAPN10 calpain 10 JBrowse link 15 139,557,643 139,568,764 RGD:9068941
G CISD2 CDGSH iron sulfur domain 2 JBrowse link 8 118,152,580 118,164,695 RGD:14298760
G FBXO7 F-box protein 7 JBrowse link 5 12,505,646 12,526,206 RGD:14298760
G FIS1 fission, mitochondrial 1 JBrowse link 3 8,938,250 8,942,102 RGD:14298760
G FUNDC1 FUN14 domain containing 1 JBrowse link X 39,726,194 39,737,663 RGD:14298760
G FUNDC2 FUN14 domain containing 2 JBrowse link X 125,354,032 125,366,029 RGD:14298760
G GABARAPL1 GABA type A receptor associated protein like 1 JBrowse link 5 61,758,127 61,767,427 RGD:14298760
G GABARAPL2 GABA type A receptor associated protein like 2 JBrowse link 6 12,122,219 12,132,986 RGD:14298760
G LOC102158581 gamma-aminobutyric acid receptor-associated protein pseudogene JBrowse link 1 76,675,741 76,676,338 RGD:14298760
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 17 37,957,830 37,959,505 RGD:14298760
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 6 1,919,879 1,941,069 RGD:14298760
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma JBrowse link 10 15,371,182 15,379,067 RGD:14298760
G P14ARF p14ARF protein JBrowse link 1 200,774,496 200,799,149 RGD:9068941
G PINK1 PTEN induced kinase 1 JBrowse link 6 78,863,195 78,884,663 RGD:14298760
G PPARGC1A PPARG coactivator 1 alpha JBrowse link 8 17,841,844 18,527,953 RGD:9068941
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 1 5,698,508 6,731,132 RGD:9068941
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 4 77,593,204 77,649,551 RGD:14298760
G SLC25A46 solute carrier family 25 member 46 JBrowse link 2 115,529,662 115,555,441 RGD:9068941
G USP30 ubiquitin specific peptidase 30 JBrowse link 14 41,765,220 41,818,937 RGD:14298760
G WDR45 WD repeat domain 45 JBrowse link X 43,150,691 43,155,981 RGD:14298760
G WDR45B WD repeat domain 45B JBrowse link 12 522,762 547,333 RGD:14298760
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 12 11,715,332 11,752,009 RGD:14298760
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 3 3,800,170 3,830,973 RGD:14298760
autophagy of nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG12 autophagy related 12 JBrowse link 2 119,948,443 119,965,702 RGD:14298760
G ATG13 autophagy related 13 JBrowse link 2 15,856,859 15,916,122 RGD:14298760
G ATG2A autophagy related 2A JBrowse link 2 7,261,819 7,282,614 RGD:14298760
G ATG2B autophagy related 2B JBrowse link 7 117,506,298 117,586,651 RGD:14298760
G ATG3 autophagy related 3 JBrowse link 13 147,279,110 147,309,597 RGD:14298760
G ATG5 autophagy related 5 JBrowse link 1 72,343,950 72,520,402 RGD:14298760
G WDR45 WD repeat domain 45 JBrowse link X 43,150,691 43,155,981 RGD:14298760
G WDR45B WD repeat domain 45B JBrowse link 12 522,762 547,333 RGD:14298760
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 12 11,715,332 11,752,009 RGD:14298760
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 3 3,800,170 3,830,973 RGD:14298760
autophagy of peroxisome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACBD5 acyl-CoA binding domain containing 5 JBrowse link 10 48,883,116 48,922,377 RGD:14298760
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 6 125,890,598 126,038,753 RGD:14298760
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 4 77,593,204 77,649,551 RGD:14298760
G TRAPPC8 trafficking protein particle complex 8 JBrowse link 6 115,692,509 115,786,668 RGD:14298760
chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG5 autophagy related 5 JBrowse link 1 72,343,950 72,520,402 RGD:9068941
G ATG7 autophagy related 7 JBrowse link 13 67,301,756 67,699,141 RGD:9068941
G BAG3 BAG cochaperone 3 JBrowse link 14 129,510,240 129,533,998 RGD:9068941
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 9 49,982,278 49,986,760 RGD:9068941
G LAMP2 lysosomal associated membrane protein 2 JBrowse link X 98,586,718 98,623,939 RGD:9068941
G STUB1 STIP1 homology and U-box containing protein 1 JBrowse link 3 41,092,514 41,095,181 RGD:9068941
G SYNPO2 synaptopodin 2 JBrowse link 8 104,677,580 104,844,169 RGD:9068941
chaperone-mediated protein transport involved in chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 9 49,982,278 49,986,760 RGD:14298760
engulfment of target by autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 3 6,037,732 6,142,569 RGD:9068941
glycophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 4 77,593,204 77,649,551 RGD:14298760
induction by virus of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 JBrowse link 1 131,244,818 131,355,240 RGD:9068941
G PHB2 prohibitin 2 JBrowse link 5 63,751,566 63,756,480 RGD:9068941
late endosomal microautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 9 49,982,278 49,986,760 RGD:14298760
G VPS4A vacuolar protein sorting 4 homolog A JBrowse link 6 17,657,792 17,669,560 RGD:9068941
G VPS4B vacuolar protein sorting 4 homolog B JBrowse link 1 158,233,039 158,273,533 RGD:14298760
late nucleophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG7 autophagy related 7 JBrowse link 13 67,301,756 67,699,141 RGD:14298760
G ATG9A autophagy related 9A JBrowse link 15 121,254,355 121,265,564 RGD:14298760
G ATG9B autophagy related 9B JBrowse link 18 6,200,246 6,208,988 RGD:14298760
lipophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AUP1 AUP1 lipid droplet regulating VLDL assembly factor JBrowse link 3 68,520,048 68,523,076 RGD:9068941
G RAB7A RAB7A, member RAS oncogene family JBrowse link 13 71,777,422 71,886,758 RGD:14298760
macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACBD5 acyl-CoA binding domain containing 5 JBrowse link 10 48,883,116 48,922,377 RGD:9068941
G ATG10 autophagy related 10 JBrowse link 2 90,436,795 90,665,383 RGD:14298760
G ATG13 autophagy related 13 JBrowse link 2 15,856,859 15,916,122 RGD:14298760
G ATG14 autophagy related 14 JBrowse link 1 184,701,020 184,743,752 RGD:9068941
G ATG3 autophagy related 3 JBrowse link 13 147,279,110 147,309,597 RGD:9068941
G ATG5 autophagy related 5 JBrowse link 1 72,343,950 72,520,402 RGD:9068941
G ATG7 autophagy related 7 JBrowse link 13 67,301,756 67,699,141 RGD:14298760
G BECN1 beclin 1 JBrowse link 12 20,041,914 20,054,249 RGD:14298760
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 3 18,433,564 18,450,296 RGD:9068941
G EI24 EI24 autophagy associated transmembrane protein JBrowse link 9 52,704,560 52,724,966 RGD:14298760
G GABARAPL1 GABA type A receptor associated protein like 1 JBrowse link 5 61,758,127 61,767,427 RGD:14298760
G GABARAPL2 GABA type A receptor associated protein like 2 JBrowse link 6 12,122,219 12,132,986 RGD:14298760
G HDAC10 histone deacetylase 10 JBrowse link 5 439,142 445,337 RGD:14298760
G ILRUN inflammation and lipid regulator with UBA-like and NBR1-like domains JBrowse link 7 30,561,744 30,667,115 RGD:14298760
G LOC102158581 gamma-aminobutyric acid receptor-associated protein pseudogene JBrowse link 1 76,675,741 76,676,338 RGD:14298760
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 17 37,957,830 37,959,505 RGD:14298760
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 6 1,919,879 1,941,069 RGD:14298760
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma JBrowse link 10 15,371,182 15,379,067 RGD:14298760
G NBR1 NBR1 autophagy cargo receptor JBrowse link 12 19,755,733 19,789,014 RGD:14298760
G PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha JBrowse link 2 41,829,969 42,024,062 RGD:9068941
G PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta JBrowse link 9 65,073,728 65,154,861 RGD:9068941
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 6 125,890,598 126,038,753 RGD:14298760
G PLAA phospholipase A2 activating protein JBrowse link 1 196,176,004 196,219,614 RGD:9068941
G SQSTM1 sequestosome 1 JBrowse link 2 78,752,768 78,763,998 RGD:9068941
G TBC1D5 TBC1 domain family member 5 JBrowse link 13 4,191,544 4,738,448 RGD:14298760
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 JBrowse link 2 4,844,627 4,860,562 RGD:9068941
G TMEM74 transmembrane protein 74 JBrowse link 4 28,722,243 28,727,007 RGD:9068941
G TP53INP2 tumor protein p53 inducible nuclear protein 2 JBrowse link 17 38,104,189 38,113,167 RGD:9068941
G UBQLN1 ubiquilin 1 JBrowse link 10 31,275,916 31,317,521 RGD:9068941
G UBXN6 UBX domain protein 6 JBrowse link 2 74,357,522 74,378,600 RGD:14298760
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 14 23,423,693 23,448,130 RGD:14298760
G VCP valosin containing protein JBrowse link 1 235,854,532 235,869,712 RGD:14298760
G YOD1 YOD1 deubiquitinase JBrowse link 9 67,672,640 67,681,889 RGD:14298760
G ZFYVE1 zinc finger FYVE-type containing 1 JBrowse link 7 96,323,256 96,380,286 RGD:14298760
mitophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 2 15,935,354 16,119,082 RGD:14298760
G ATG13 autophagy related 13 JBrowse link 2 15,856,859 15,916,122 RGD:14298760
G ATG14 autophagy related 14 JBrowse link 1 184,701,020 184,743,752 RGD:14298760
G BECN1 beclin 1 JBrowse link 12 20,041,914 20,054,249 RGD:14298760
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 6 1,919,879 1,941,069 RGD:9068941
G PHB2 prohibitin 2 JBrowse link 5 63,751,566 63,756,480 RGD:9068941
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 1 5,698,508 6,731,132 RGD:14298760
G SQSTM1 sequestosome 1 JBrowse link 2 78,752,768 78,763,998 RGD:14298760
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 14 23,423,693 23,448,130 RGD:9068941
mitophagy by induced vacuole formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SPATA18 spermatogenesis associated 18 JBrowse link 8 39,163,001 39,206,217 RGD:14298760
negative regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BECN1 beclin 1 JBrowse link 12 20,041,914 20,054,249 RGD:14298760
G CHMP4A charged multivesicular body protein 4A JBrowse link 7 75,089,092 75,093,796 RGD:14298760
G CHMP4B charged multivesicular body protein 4B JBrowse link 17 37,285,422 37,334,103 RGD:14298760
G EHMT2 euchromatic histone lysine methyltransferase 2 JBrowse link 7 23,977,683 23,992,673 RGD:14298760
G FEZ1 fasciculation and elongation protein zeta 1 JBrowse link 9 52,621,175 52,672,660 RGD:14298760
G FEZ2 fasciculation and elongation protein zeta 2 JBrowse link 3 103,566,214 103,612,855 RGD:14298760
G LOC100157002 vesicle-trafficking protein SEC22b JBrowse link 4 100,880,843 100,900,942 RGD:14298760
G LRRK2 leucine rich repeat kinase 2 JBrowse link 5 71,800,337 71,945,828 RGD:14298760
G MTM1 myotubularin 1 JBrowse link X 122,286,904 122,379,302 RGD:14298760
G NUPR1 nuclear protein 1, transcriptional regulator JBrowse link 3 18,402,781 18,404,411 RGD:14298760
G PHF23 PHD finger protein 23 JBrowse link 12 52,590,801 52,595,208 RGD:14298760
G PINK1 PTEN induced kinase 1 JBrowse link 6 78,863,195 78,884,663 RGD:14298760
G SCFD1 sec1 family domain containing 1 JBrowse link 7 68,694,579 68,851,055 RGD:14298760
G SMCR8 SMCR8-C9orf72 complex subunit JBrowse link 12 60,435,276 60,443,525 RGD:14298760
G TMEM39A transmembrane protein 39A JBrowse link 13 140,797,098 140,830,732 RGD:9068941
negative regulation of autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLEC16A C-type lectin domain containing 16A JBrowse link 3 31,938,133 32,158,343 RGD:9068941
G PHF23 PHD finger protein 23 JBrowse link 12 52,590,801 52,595,208 RGD:14298760
G RUBCN rubicon autophagy regulator JBrowse link 13 134,299,971 134,363,620 RGD:14298760
G TMEM39A transmembrane protein 39A JBrowse link 13 140,797,098 140,830,732 RGD:9068941
G UBQLN4 ubiquilin 4 JBrowse link 4 93,976,386 93,994,830 RGD:14298760
negative regulation of autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADRA1A adrenoceptor alpha 1A JBrowse link 14 10,623,391 10,733,378 RGD:14298760
G AKT1 AKT serine/threonine kinase 1 RGD:9068941
G BCL2 BCL2 apoptosis regulator JBrowse link 1 158,337,403 158,518,214 RGD:9068941
G BECN1 beclin 1 JBrowse link 12 20,041,914 20,054,249 RGD:9068941
G BMF Bcl2 modifying factor JBrowse link 1 131,178,021 131,199,668 RGD:14298760
G CPTP ceramide-1-phosphate transfer protein JBrowse link 6 63,607,991 63,612,325 RGD:9068941
G DAP death associated protein JBrowse link 16 250,212 322,075 RGD:14298760
G DAPL1 death associated protein like 1 JBrowse link 15 65,796,462 65,820,450 RGD:14298760
G EIF4E eukaryotic translation initiation factor 4E JBrowse link 8 121,409,633 121,464,467 RGD:9068941
G EIF4G1 eukaryotic translation initiation factor 4 gamma 1 JBrowse link 13 122,203,488 122,225,371 RGD:14298760
G EIF4G2 eukaryotic translation initiation factor 4 gamma 2 JBrowse link 2 48,666,590 48,678,656 RGD:9068941
G EIF4G3 eukaryotic translation initiation factor 4 gamma 3 JBrowse link 6 79,022,222 79,382,062 RGD:9068941
G FOXK1 forkhead box K1 JBrowse link 3 3,556,139 3,621,150 RGD:9068941
G FOXK2 forkhead box K2 JBrowse link 12 560,848 615,646 RGD:14298760
G GATA4 GATA binding protein 4 JBrowse link 14 14,858,470 14,938,156 RGD:9068941
G GOLGA2 golgin A2 JBrowse link 1 268,702,823 268,721,174 RGD:9068941
G HERC1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 JBrowse link 1 108,206,172 108,404,149 RGD:14298760
G HTR2B 5-hydroxytryptamine receptor 2B JBrowse link 15 131,844,578 131,860,417 RGD:14298760
G IL10 interleukin 10 JBrowse link 9 67,400,727 67,405,941 RGD:14298760
G IL10RA interleukin 10 receptor subunit alpha JBrowse link 9 45,310,527 45,324,557 RGD:14298760
G KDM4A lysine demethylase 4A JBrowse link 6 167,597,954 167,642,381 RGD:9068941
G KIF25 kinesin family member 25 JBrowse link 1 1,527,425 1,566,107 RGD:9068941
G KLHL22 kelch like family member 22 JBrowse link 14 50,773,917 50,809,991 RGD:9068941
G LEP leptin JBrowse link 18 20,106,867 20,124,071 RGD:14298760
G LEPR leptin receptor JBrowse link 6 146,802,297 146,896,152 RGD:14298760
G LOC106510645 myotubularin-related protein 9 JBrowse link 6 88,705,153 88,712,848 RGD:14298760
G MCL1 MCL1 apoptosis regulator, BCL2 family member JBrowse link 4 98,562,092 98,567,014 RGD:14298760
G MT3 metallothionein 3 JBrowse link 6 18,634,735 18,636,134 RGD:14298760
G MTMR8 myotubularin related protein 8 JBrowse link X 50,931,199 51,077,796 RGD:14298760
G MTMR9 myotubularin related protein 9 JBrowse link 14 14,457,974 14,504,453 RGD:14298760
G MTOR mechanistic target of rapamycin kinase JBrowse link 6 71,286,989 71,412,913 RGD:9068941
G NAMPT nicotinamide phosphoribosyltransferase JBrowse link 9 106,119,896 106,162,126 RGD:9068941
G NUPR1 nuclear protein 1, transcriptional regulator JBrowse link 3 18,402,781 18,404,411 RGD:9068941
G PTK2 protein tyrosine kinase 2 JBrowse link 4 2,656,606 2,896,060 RGD:14298760
G PTPN22 protein tyrosine phosphatase non-receptor type 22 JBrowse link 4 106,692,102 106,758,101 RGD:9068941
G RASIP1 Ras interacting protein 1 JBrowse link 6 54,058,748 54,072,415 RGD:14298760
G RNF5 ring finger protein 5 JBrowse link 7 24,215,493 24,217,983 RGD:14298760
G RRAGA Ras related GTP binding A JBrowse link 1 203,772,063 203,774,580 RGD:14298760
G RUBCN rubicon autophagy regulator JBrowse link 13 134,299,971 134,363,620 RGD:9068941
G SIRT2 sirtuin 2 JBrowse link 6 47,682,427 47,703,408 RGD:9068941
G SMG1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase JBrowse link 3 26,653,819 26,758,268 RGD:14298760
G STAT3 signal transducer and activator of transcription 3 JBrowse link 12 20,407,316 20,471,091 RGD:14298760
G TBC1D14 TBC1 domain family member 14 JBrowse link 8 3,833,314 3,918,783 RGD:9068941
G TREM2 triggering receptor expressed on myeloid cells 2 JBrowse link 7 36,465,921 36,471,509 RGD:9068941
G WASHC1 WASH complex subunit 1 JBrowse link 5 67,395,737 67,412,408 RGD:14298760
G WDR6 WD repeat domain 6 JBrowse link 13 31,642,207 31,651,367 RGD:9068941
negative regulation of autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PINK1 PTEN induced kinase 1 JBrowse link 6 78,863,195 78,884,663 RGD:14298760
G TSPO translocator protein JBrowse link 5 5,723,190 5,735,097 RGD:14298760
negative regulation of chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTSA cathepsin A JBrowse link 17 48,082,480 48,089,971 RGD:9068941
G SNCA synuclein alpha JBrowse link 8 129,247,724 129,388,307 RGD:14298760
negative regulation of macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HMOX1 heme oxygenase 1 RGD:9068941
G LRRK2 leucine rich repeat kinase 2 JBrowse link 5 71,800,337 71,945,828 RGD:9068941
G LZTS1 leucine zipper tumor suppressor 1 JBrowse link 14 4,344,496 4,404,208 RGD:14298760
G MTOR mechanistic target of rapamycin kinase JBrowse link 6 71,286,989 71,412,913 RGD:14298760
G NPC1 NPC intracellular cholesterol transporter 1 JBrowse link 6 108,403,126 108,450,486 RGD:9068941
G NRBP2 nuclear receptor binding protein 2 JBrowse link 4 800,722 808,031 RGD:14298760
G PINK1 PTEN induced kinase 1 JBrowse link 6 78,863,195 78,884,663 RGD:9068941
G POLDIP2 DNA polymerase delta interacting protein 2 JBrowse link 12 44,626,447 44,636,302 RGD:14298760
G QSOX1 quiescin sulfhydryl oxidase 1 JBrowse link 9 121,779,072 121,822,829 RGD:14298760
G SMCR8 SMCR8-C9orf72 complex subunit JBrowse link 12 60,435,276 60,443,525 RGD:9068941
G SMG1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase JBrowse link 3 26,653,819 26,758,268 RGD:14298760
G TSC1 TSC complex subunit 1 JBrowse link 1 272,636,530 272,685,948 RGD:9068941
G TSC2 TSC complex subunit 2 JBrowse link 3 39,898,924 39,935,579 RGD:9068941
G USP36 ubiquitin specific peptidase 36 JBrowse link 12 3,309,176 3,348,531 RGD:9068941
negative regulation of macroautophagy by TORC1 signaling term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLEC16A C-type lectin domain containing 16A JBrowse link 3 31,938,133 32,158,343 RGD:9068941
negative regulation of mitophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLEC16A C-type lectin domain containing 16A JBrowse link 3 31,938,133 32,158,343 RGD:9068941
G RNF41 ring finger protein 41 JBrowse link 5 21,595,703 21,624,589 RGD:14298760
G TIGAR TP53 induced glycolysis regulatory phosphatase JBrowse link 5 66,044,679 66,067,571 RGD:14298760
G TP53 tumor protein p53 JBrowse link 12 52,939,643 52,953,786 RGD:14298760
G USP30 ubiquitin specific peptidase 30 JBrowse link 14 41,765,220 41,818,937 RGD:9068941
negative regulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HTRA2 HtrA serine peptidase 2 JBrowse link 3 68,516,666 68,520,025 RGD:14298760
negative regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G VPS13C vacuolar protein sorting 13 homolog C JBrowse link 1 109,931,269 110,105,519 RGD:9068941
parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HDAC6 histone deacetylase 6 JBrowse link X 42,917,911 42,941,894 RGD:14298760
G MFN2 mitofusin 2 JBrowse link 6 72,026,512 72,056,439 RGD:14298760
G OPTN optineurin JBrowse link 10 48,532,029 48,582,952 RGD:9068941
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 1 5,698,508 6,731,132 RGD:14298760
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 3 6,037,732 6,142,569 RGD:9068941
piecemeal microautophagy of the nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG13 autophagy related 13 JBrowse link 2 15,856,859 15,916,122 RGD:14298760
G ATG7 autophagy related 7 JBrowse link 13 67,301,756 67,699,141 RGD:14298760
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 4 77,593,204 77,649,551 RGD:14298760
positive regulation by symbiont of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG5 autophagy related 5 JBrowse link 1 72,343,950 72,520,402 RGD:14298760
G ATG7 autophagy related 7 JBrowse link 13 67,301,756 67,699,141 RGD:14298760
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 14 23,423,693 23,448,130 RGD:14298760
G ULK2 unc-51 like autophagy activating kinase 2 JBrowse link 12 59,806,904 59,878,398 RGD:9068941
positive regulation of aggrephagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BAG3 BAG cochaperone 3 JBrowse link 14 129,510,240 129,533,998 RGD:14298760
G HSPB8 heat shock protein family B (small) member 8 JBrowse link 14 33,626,125 33,639,824 RGD:14298760
G HTT huntingtin JBrowse link 8 1,809,768 1,934,002 RGD:14298760
positive regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BECN1 beclin 1 JBrowse link 12 20,041,914 20,054,249 RGD:9068941
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 4 110,881,770 110,954,092 RGD:14298760
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link 1 267,964,875 268,008,833 RGD:14298760
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha JBrowse link 10 52,224,367 52,408,928 RGD:14298760
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta JBrowse link 12 23,317,113 23,345,661 RGD:9068941
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma JBrowse link 5 22,854,142 22,867,032 RGD:14298760
G RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 JBrowse link 15 16,756,368 16,893,148 RGD:14298760
G RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 JBrowse link 10 9,734,766 9,828,330 RGD:14298760
G RALB RAS like proto-oncogene B JBrowse link 15 31,064,341 31,118,437 RGD:14298760
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 JBrowse link 4 129,361,596 129,395,790 RGD:14298760
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 14 23,423,693 23,448,130 RGD:9068941
positive regulation of autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADRB2 adrenoceptor beta 2 JBrowse link 2 150,032,649 150,035,591 RGD:14298760
G CALCOCO2 calcium binding and coiled-coil domain 2 JBrowse link 12 25,050,008 25,080,230 RGD:14298760
G CLEC16A C-type lectin domain containing 16A JBrowse link 3 31,938,133 32,158,343 RGD:9068941
G FYCO1 FYVE and coiled-coil domain autophagy adaptor 1 JBrowse link 13 29,068,107 29,146,792 RGD:14298760
G SMCR8 SMCR8-C9orf72 complex subunit JBrowse link 12 60,435,276 60,443,525 RGD:14298760
positive regulation of autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AGER advanced glycosylation end-product specific receptor JBrowse link 7 24,218,116 24,221,162 RGD:9068941
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 2 15,935,354 16,119,082 RGD:9068941
G ATG16L1 autophagy related 16 like 1 JBrowse link 15 133,651,294 133,693,472 RGD:14298760
G ATG7 autophagy related 7 JBrowse link 13 67,301,756 67,699,141 RGD:9068941
G BECN1 beclin 1 JBrowse link 12 20,041,914 20,054,249 RGD:9068941
G COPS3 COP9 signalosome subunit 3 JBrowse link 12 61,000,562 61,023,920 RGD:14298760
G DAPK1 death associated protein kinase 1 JBrowse link 10 27,724,644 27,954,708 RGD:14298760
G DCN decorin JBrowse link 5 91,678,601 91,713,925 RGD:14298760
G DHRSX dehydrogenase/reductase X-linked JBrowse link Y 5,248,447 5,374,873 RGD:9068941
G FLCN folliculin JBrowse link 12 61,029,186 61,045,400 RGD:9068941
G FOXO1 forkhead box O1 JBrowse link 11 15,317,222 15,410,059 RGD:14298760
G FOXO3 forkhead box O3 JBrowse link 1 74,626,673 74,760,323 RGD:14298760
G GSK3A glycogen synthase kinase 3 alpha JBrowse link 6 49,690,319 49,700,735 RGD:14298760
G GSK3B glycogen synthase kinase 3 beta JBrowse link 13 140,136,109 140,370,197 RGD:9068941
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 1 190,625,436 190,673,926 RGD:9068941
G HMGB1 high mobility group box 1 JBrowse link 11 7,195,556 7,321,071 RGD:14298760
G IFNG interferon gamma JBrowse link 5 32,477,906 32,482,670 RGD:14298760
G KAT5 lysine acetyltransferase 5 JBrowse link 2 6,560,544 6,572,461 RGD:9068941
G LOC100622028 tripartite motif-containing protein 6 JBrowse link 9 4,197,922 4,204,688 RGD:14298760
G LOC100738479 tripartite motif-containing protein 34 JBrowse link 9 4,175,660 4,188,528 RGD:14298760
G LOC102159510 dehydrogenase/reductase SDR family member on chromosome X RGD:14298760
G LOC106504368 butyrophilin subfamily 1 member A1-like JBrowse link 7 24,680,986 24,712,081 RGD:14298760
G LOC733579 tripartite motif protein TRIM5 JBrowse link 9 4,157,290 4,170,233 RGD:14298760
G LRRK2 leucine rich repeat kinase 2 JBrowse link 5 71,800,337 71,945,828 RGD:14298760
G MAP2K1 mitogen-activated protein kinase kinase 1 JBrowse link 1 164,381,892 164,469,313 RGD:9068941
G MEFV MEFV innate immuity regulator, pyrin JBrowse link 3 38,934,573 38,948,609 RGD:9068941
G MID2 midline 2 JBrowse link X 88,294,032 88,394,885 RGD:9068941
G MTDH metadherin JBrowse link 4 39,052,895 39,113,380 RGD:14298760
G OPTN optineurin JBrowse link 10 48,532,029 48,582,952 RGD:9068941
G ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 JBrowse link 12 22,411,130 22,417,744 RGD:9068941
G PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha JBrowse link 2 41,829,969 42,024,062 RGD:14298760
G PIM2 Pim-2 proto-oncogene, serine/threonine kinase JBrowse link X 42,993,547 42,998,575 RGD:9068941
G PLEKHF1 pleckstrin homology and FYVE domain containing 1 JBrowse link 6 39,786,201 39,797,578 RGD:14298760
G PLK2 polo like kinase 2 JBrowse link 16 37,299,116 37,305,114 RGD:14298760
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 16 25,745,902 25,783,524 RGD:14298760
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 6 155,683,392 155,754,283 RGD:14298760
G PRKD1 protein kinase D1 JBrowse link 7 69,527,743 69,872,374 RGD:9068941
G RNF152 ring finger protein 152 JBrowse link 1 159,529,879 159,606,031 RGD:14298760
G ROCK1 Rho associated coiled-coil containing protein kinase 1 JBrowse link 6 106,163,899 106,314,998 RGD:14298760
G SH3BP4 SH3 domain binding protein 4 JBrowse link 15 135,003,501 135,094,801 RGD:14298760
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 JBrowse link 4 129,361,596 129,395,790 RGD:9068941
G STK11 serine/threonine kinase 11 JBrowse link 2 77,229,888 77,249,322 RGD:14298760
G SVIP small VCP interacting protein JBrowse link 2 36,703,757 36,714,018 RGD:9068941
G TFEB transcription factor EB JBrowse link 7 36,870,240 36,920,887 RGD:9068941
G TICAM1 toll like receptor adaptor molecule 1 JBrowse link 2 74,004,566 74,021,100 RGD:14298760
G TLR9 toll like receptor 9 JBrowse link 13 34,353,444 34,370,990 RGD:9068941
G TMEM59 transmembrane protein 59 JBrowse link 6 158,261,936 158,290,465 RGD:14298760
G TP53INP1 tumor protein p53 inducible nuclear protein 1 JBrowse link 4 41,747,654 41,766,688 RGD:14298760
G TP53INP2 tumor protein p53 inducible nuclear protein 2 JBrowse link 17 38,104,189 38,113,167 RGD:14298760
G TPCN1 two pore segment channel 1 JBrowse link 14 38,698,680 38,773,189 RGD:14298760
G TRIM21 tripartite motif containing 21 JBrowse link 9 5,782,133 5,790,628 RGD:14298760
G TRIM27 tripartite motif containing 27 RGD:14298760
G TRIM38 tripartite motif containing 38 JBrowse link 7 20,682,536 20,694,340 RGD:14298760
G TRIM65 tripartite motif containing 65 JBrowse link 12 5,523,056 5,528,884 RGD:14298760
G TRIM68 tripartite motif containing 68 JBrowse link 9 5,502,931 5,516,936 RGD:14298760
G TRIM8 tripartite motif containing 8 JBrowse link 14 113,637,437 113,652,577 RGD:14298760
G TRIML1 tripartite motif family like 1 JBrowse link 17 7,284,392 7,290,639 RGD:14298760
G TRIML2 tripartite motif family like 2 JBrowse link 17 7,310,656 7,326,072 RGD:14298760
G TSC2 TSC complex subunit 2 JBrowse link 3 39,898,924 39,935,579 RGD:9068941
G UFL1 UFM1 specific ligase 1 JBrowse link 1 63,638,589 63,698,931 RGD:9068941
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 14 23,423,693 23,448,130 RGD:9068941
G XBP1 X-box binding protein 1 JBrowse link 14 46,011,239 46,016,526 RGD:9068941
G ZC3H12A zinc finger CCCH-type containing 12A JBrowse link 6 93,541,334 93,551,200 RGD:14298760
positive regulation of autophagy in response to ER overload term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCL2L11 BCL2 like 11 JBrowse link 3 45,156,791 45,202,996 RGD:9068941
G BID BH3 interacting domain death agonist JBrowse link 5 69,849,007 69,874,647 RGD:9068941
G DDIT3 DNA damage inducible transcript 3 JBrowse link 5 22,785,441 22,789,867 RGD:9068941
positive regulation of autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BNIP3 BCL2 interacting protein 3 JBrowse link 14 140,362,123 140,371,951 RGD:9068941
G FBXO7 F-box protein 7 JBrowse link 5 12,505,646 12,526,206 RGD:14298760
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 1 190,625,436 190,673,926 RGD:14298760
G HTT huntingtin JBrowse link 8 1,809,768 1,934,002 RGD:14298760
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 1 5,698,508 6,731,132 RGD:9068941
positive regulation of autophagy of mitochondrion in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP5IF1 ATP synthase inhibitory factor subunit 1 JBrowse link 6 85,307,242 85,309,211 RGD:14298760
G GBA glucosylceramidase beta JBrowse link 4 94,583,905 94,606,689 RGD:14298760
G HK2 hexokinase 2 JBrowse link 3 68,155,656 68,231,187 RGD:14298760
G MUL1 mitochondrial E3 ubiquitin protein ligase 1 JBrowse link 6 78,747,687 78,758,821 RGD:14298760
G PINK1 PTEN induced kinase 1 JBrowse link 6 78,863,195 78,884,663 RGD:9068941
positive regulation of chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PLK3 polo like kinase 3 JBrowse link 6 166,528,760 166,533,734 RGD:14298760
positive regulation of lipophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADRB2 adrenoceptor beta 2 JBrowse link 2 150,032,649 150,035,591 RGD:14298760
G HTT huntingtin JBrowse link 8 1,809,768 1,934,002 RGD:14298760
G SESN2 sestrin 2 JBrowse link 6 85,321,982 85,348,044 RGD:14298760
G SPTLC1 serine palmitoyltransferase long chain base subunit 1 JBrowse link 14 3,081,964 3,138,113 RGD:14298760
G SPTLC2 serine palmitoyltransferase long chain base subunit 2 JBrowse link 7 100,545,360 100,638,973 RGD:14298760
positive regulation of macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BNIP3 BCL2 interacting protein 3 JBrowse link 14 140,362,123 140,371,951 RGD:14298760
G BNIP3L BCL2 interacting protein 3 like JBrowse link 14 10,318,688 10,345,689 RGD:14298760
G C10H9orf72 chromosome 10 C9orf72 homolog JBrowse link 10 38,389,366 38,415,903 RGD:14298760
G DCN decorin JBrowse link 5 91,678,601 91,713,925 RGD:14298760
G EPM2A EPM2A glucan phosphatase, laforin JBrowse link 1 19,806,363 19,893,350 RGD:9068941
G GNAI3 G protein subunit alpha i3 JBrowse link 4 110,527,363 110,579,331 RGD:14298760
G GPSM1 G protein signaling modulator 1 RGD:9068941
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 1 190,625,436 190,673,926 RGD:14298760
G HMOX1 heme oxygenase 1 RGD:9068941
G IKBKG inhibitor of nuclear factor kappa B kinase regulatory subunit gamma JBrowse link X 125,035,575 125,056,445 RGD:9068941
G IL4 interleukin 4 JBrowse link 2 134,986,817 134,994,365 RGD:14298760
G KDR kinase insert domain receptor JBrowse link 8 41,809,116 41,856,379 RGD:14298760
G LARP1 La ribonucleoprotein 1, translational regulator JBrowse link 16 68,390,879 68,451,605 RGD:14298760
G MAP3K7 mitogen-activated protein kinase kinase kinase 7 JBrowse link 1 58,482,046 58,548,087 RGD:9068941
G PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 JBrowse link 9 44,513,114 44,534,312 RGD:14298760
G PIM2 Pim-2 proto-oncogene, serine/threonine kinase JBrowse link X 42,993,547 42,998,575 RGD:14298760
G PINK1 PTEN induced kinase 1 JBrowse link 6 78,863,195 78,884,663 RGD:9068941
G RAB12 RAB12, member RAS oncogene family JBrowse link 6 99,216,225 99,244,627 RGD:14298760
G RUFY4 RUN and FYVE domain containing 4 JBrowse link 15 120,193,657 120,213,625 RGD:14298760
G SCOC short coiled-coil protein JBrowse link 8 86,680,782 86,690,691 RGD:9068941
G SESN1 sestrin 1 JBrowse link 1 75,056,731 75,170,374 RGD:14298760
G SESN2 sestrin 2 JBrowse link 6 85,321,982 85,348,044 RGD:14298760
G SESN3 sestrin 3 JBrowse link 9 27,207,239 27,279,205 RGD:14298760
G SIRT1 sirtuin 1 JBrowse link 14 71,091,167 71,126,351 RGD:14298760
G STING1 stimulator of interferon response cGAMP interactor 1 JBrowse link 2 141,359,402 141,367,222 RGD:14298760
G SUPT5H SPT5 homolog, DSIF elongation factor subunit JBrowse link 6 48,095,001 48,125,120 RGD:9068941
G TBK1 TANK binding kinase 1 JBrowse link 5 28,880,210 28,929,964 RGD:9068941
G TRIM13 tripartite motif containing 13 JBrowse link 11 17,785,031 17,850,005 RGD:14298760
G TSC1 TSC complex subunit 1 JBrowse link 1 272,636,530 272,685,948 RGD:9068941
G TSC2 TSC complex subunit 2 JBrowse link 3 39,898,924 39,935,579 RGD:14298760
G WAC WW domain containing adaptor with coiled-coil JBrowse link 10 39,932,562 40,024,114 RGD:14298760
positive regulation of mitophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 1 5,698,508 6,731,132 RGD:9068941
G VPS13D vacuolar protein sorting 13 homolog D JBrowse link 6 72,256,865 72,514,256 RGD:14298760
positive regulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDC37 cell division cycle 37, HSP90 cochaperone JBrowse link 2 69,202,695 69,212,909 RGD:14298760
G HDAC6 histone deacetylase 6 JBrowse link X 42,917,911 42,941,894 RGD:9068941
G HUWE1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 JBrowse link X 46,281,958 46,444,315 RGD:14298760
G PINK1 PTEN induced kinase 1 JBrowse link 6 78,863,195 78,884,663 RGD:14298760
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 1 5,698,508 6,731,132 RGD:9068941
G TOMM7 translocase of outer mitochondrial membrane 7 JBrowse link 9 91,570,069 91,578,991 RGD:14298760
positive regulation of xenophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link 1 267,964,875 268,008,833 RGD:14298760
G MAPK3 mitogen-activated protein kinase 3 JBrowse link 3 18,291,444 18,299,410 RGD:14298760
G NOD1 nucleotide binding oligomerization domain containing 1 JBrowse link 18 42,464,667 42,509,135 RGD:9068941
G NOD2 nucleotide binding oligomerization domain containing 2 JBrowse link 6 34,132,127 34,167,446 RGD:9068941
G OPTN optineurin JBrowse link 10 48,532,029 48,582,952 RGD:9068941
G RIPK2 receptor interacting serine/threonine kinase 2 JBrowse link 4 47,026,558 47,075,133 RGD:14298760
G TBK1 TANK binding kinase 1 JBrowse link 5 28,880,210 28,929,964 RGD:14298760
G TLR2 toll like receptor 2 JBrowse link 8 75,416,257 75,428,370 RGD:9068941
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG16L1 autophagy related 16 like 1 JBrowse link 15 133,651,294 133,693,472 RGD:14298760
G ATG5 autophagy related 5 JBrowse link 1 72,343,950 72,520,402 RGD:14298760
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 3 3,800,170 3,830,973 RGD:14298760
protein localization to phagophore assembly site term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG13 autophagy related 13 JBrowse link 2 15,856,859 15,916,122 RGD:14298760
G ATG16L1 autophagy related 16 like 1 JBrowse link 15 133,651,294 133,693,472 RGD:14298760
G ATG9A autophagy related 9A JBrowse link 15 121,254,355 121,265,564 RGD:14298760
G ATG9B autophagy related 9B JBrowse link 18 6,200,246 6,208,988 RGD:14298760
G MFN2 mitofusin 2 JBrowse link 6 72,026,512 72,056,439 RGD:14298760
G PACS2 phosphofurin acidic cluster sorting protein 2 RGD:14298760
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 6 125,890,598 126,038,753 RGD:14298760
G STX17 syntaxin 17 JBrowse link 1 241,657,463 241,785,270 RGD:14298760
G TRAPPC8 trafficking protein particle complex 8 JBrowse link 6 115,692,509 115,786,668 RGD:14298760
G WDR45 WD repeat domain 45 JBrowse link X 43,150,691 43,155,981 RGD:14298760
G WDR45B WD repeat domain 45B JBrowse link 12 522,762 547,333 RGD:14298760
G WIPI1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 12 11,715,332 11,752,009 RGD:14298760
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 3 3,800,170 3,830,973 RGD:14298760
protein targeting to lysosome involved in chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 9 49,982,278 49,986,760 RGD:14298760
G LAMP2 lysosomal associated membrane protein 2 JBrowse link X 98,586,718 98,623,939 RGD:14298760
protein targeting to vacuole involved in autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 3 6,037,732 6,142,569 RGD:9068941
regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADPRHL1 ADP-ribosylhydrolase like 1 JBrowse link 11 78,662,293 78,677,945 RGD:14298760
G C10H9orf72 chromosome 10 C9orf72 homolog JBrowse link 10 38,389,366 38,415,903 RGD:14298760
G IFT20 intraflagellar transport 20 JBrowse link 12 44,609,586 44,616,685 RGD:14298760
G IFT88 intraflagellar transport 88 JBrowse link 11 943,444 1,025,617 RGD:9068941
G MTMR3 myotubularin related protein 3 JBrowse link 14 46,874,977 47,022,581 RGD:14298760
G NPRL3 NPR3 like, GATOR1 complex subunit JBrowse link 3 41,478,465 41,540,719 RGD:14298760
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing JBrowse link 15 111,372,148 111,468,720 RGD:14298760
G RAB1B RAB1B, member RAS oncogene family JBrowse link 2 6,110,438 6,116,443 RGD:9068941
G RNF5 ring finger protein 5 JBrowse link 7 24,215,493 24,217,983 RGD:14298760
G TBC1D12 TBC1 domain family member 12 JBrowse link 14 105,806,384 105,919,986 RGD:14298760
G TBC1D14 TBC1 domain family member 14 JBrowse link 8 3,833,314 3,918,783 RGD:14298760
G UBQLN2 ubiquilin 2 JBrowse link X 48,948,062 48,951,392 RGD:14298760
regulation of autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLEC16A C-type lectin domain containing 16A JBrowse link 3 31,938,133 32,158,343 RGD:14298760
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 3 18,433,564 18,450,296 RGD:14298760
G TBC1D25 TBC1 domain family member 25 JBrowse link X 42,682,267 42,696,579 RGD:14298760
regulation of autophagosome size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 6 75,618,317 75,638,591 RGD:14298760
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 3 18,433,564 18,450,296 RGD:14298760
regulation of autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACER2 alkaline ceramidase 2 JBrowse link 1 203,387,669 203,415,018 RGD:14298760
G ATM ATM serine/threonine kinase JBrowse link 9 36,620,656 36,759,555 RGD:14298760
G BCL2 BCL2 apoptosis regulator JBrowse link 1 158,337,403 158,518,214 RGD:9068941
G BOK BCL2 family apoptosis regulator BOK JBrowse link 15 140,171,134 140,184,126 RGD:14298760
G C10H9orf72 chromosome 10 C9orf72 homolog JBrowse link 10 38,389,366 38,415,903 RGD:9068941
G CASP1 caspase 1, apoptosis-related cysteine peptidase JBrowse link 9 35,188,066 35,199,364 RGD:9068941
G CHMP4B charged multivesicular body protein 4B JBrowse link 17 37,285,422 37,334,103 RGD:9068941
G CISD2 CDGSH iron sulfur domain 2 JBrowse link 8 118,152,580 118,164,695 RGD:14298760
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 3 18,433,564 18,450,296 RGD:9068941
G DDIT3 DNA damage inducible transcript 3 JBrowse link 5 22,785,441 22,789,867 RGD:9068941
G DEPDC5 DEP domain containing 5, GATOR1 subcomplex subunit JBrowse link 14 48,421,788 48,523,530 RGD:14298760
G DEPP1 DEPP1 autophagy regulator JBrowse link 14 91,118,332 91,120,242 RGD:14298760
G DRAM1 DNA damage regulated autophagy modulator 1 JBrowse link 5 82,292,578 82,325,580 RGD:14298760
G DRAM2 DNA damage regulated autophagy modulator 2 JBrowse link 4 109,183,389 109,205,735 RGD:14298760
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit JBrowse link 3 29,266,234 29,306,109 RGD:14298760
G FBXL2 F-box and leucine rich repeat protein 2 JBrowse link 13 19,128,145 19,206,458 RGD:14298760
G GPR137 G protein-coupled receptor 137 JBrowse link 2 7,826,454 7,831,010 RGD:14298760
G GPR137B G protein-coupled receptor 137B JBrowse link 14 55,125,405 55,181,688 RGD:14298760
G KAT8 lysine acetyltransferase 8 JBrowse link 3 17,362,326 17,373,110 RGD:14298760
G KEAP1 kelch like ECH associated protein 1 JBrowse link 2 69,280,940 69,290,267 RGD:14298760
G LAMP3 lysosomal associated membrane protein 3 JBrowse link 13 121,081,717 121,117,660 RGD:9068941
G LMX1B LIM homeobox transcription factor 1 beta JBrowse link 1 267,207,273 267,290,862 RGD:9068941
G LOC100522011 apoptosis-associated speck-like protein containing a CARD JBrowse link 3 17,305,921 17,307,521 RGD:14298760
G LRRK2 leucine rich repeat kinase 2 JBrowse link 5 71,800,337 71,945,828 RGD:9068941
G MAPK15 mitogen-activated protein kinase 15 JBrowse link 4 909,266 915,537 RGD:9068941
G MAPT microtubule associated protein tau JBrowse link 12 17,098,259 17,211,483 RGD:9068941
G MFSD8 major facilitator superfamily domain containing 8 JBrowse link 8 96,925,063 96,972,390 RGD:14298760
G MTCL1 microtubule crosslinking factor 1 JBrowse link 6 99,062,347 99,178,570 RGD:14298760
G MTMR4 myotubularin related protein 4 JBrowse link 12 34,745,232 34,771,315 RGD:14298760
G MTMR8 myotubularin related protein 8 JBrowse link X 50,931,199 51,077,796 RGD:14298760
G MTOR mechanistic target of rapamycin kinase JBrowse link 6 71,286,989 71,412,913 RGD:9068941
G MYCBP MYC binding protein JBrowse link 6 94,805,649 94,814,443 RGD:14298760
G NLRP6 NLR family pyrin domain containing 6 JBrowse link 2 90,001 97,441 RGD:9068941
G NUPR1 nuclear protein 1, transcriptional regulator JBrowse link 3 18,402,781 18,404,411 RGD:9068941
G PIK3R2 phosphoinositide-3-kinase regulatory subunit 2 JBrowse link 2 59,637,363 59,652,075 RGD:9068941
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha JBrowse link 10 52,224,367 52,408,928 RGD:9068941
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta JBrowse link 12 23,317,113 23,345,661 RGD:9068941
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma JBrowse link 5 22,854,142 22,867,032 RGD:9068941
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 1 5,698,508 6,731,132 RGD:9068941
G RAB39B RAB39B, member RAS oncogene family JBrowse link X 125,520,764 125,528,253 RGD:14298760
G RAB8A RAB8A, member RAS oncogene family JBrowse link 2 61,430,680 61,450,351 RGD:14298760
G RMC1 regulator of MON1-CCZ1 JBrowse link 6 108,376,763 108,403,175 RGD:14298760
G RPTOR regulatory associated protein of MTOR complex 1 JBrowse link 12 1,709,121 1,991,844 RGD:14298760
G RRAGA Ras related GTP binding A JBrowse link 1 203,772,063 203,774,580 RGD:14298760
G RRAGB Ras related GTP binding B JBrowse link X 48,286,584 48,330,196 RGD:14298760
G RRAGC Ras related GTP binding C JBrowse link 6 94,785,906 94,803,017 RGD:14298760
G RRAGD Ras related GTP binding D JBrowse link 1 57,374,047 57,424,058 RGD:14298760
G SMCR8 SMCR8-C9orf72 complex subunit JBrowse link 12 60,435,276 60,443,525 RGD:9068941
G SOGA1 suppressor of glucose, autophagy associated 1 JBrowse link 17 40,020,102 40,098,802 RGD:14298760
G SOGA3 SOGA family member 3 JBrowse link 1 35,693,886 35,776,754 RGD:14298760
G TMEM150A transmembrane protein 150A JBrowse link 3 59,166,845 59,171,125 RGD:14298760
G TMEM150C transmembrane protein 150C JBrowse link 8 135,684,681 135,764,608 RGD:14298760
G TPCN2 two pore segment channel 2 JBrowse link 2 4,069,267 4,105,065 RGD:9068941
G TRIB3 tribbles pseudokinase 3 JBrowse link 17 34,808,273 34,819,592 RGD:9068941
G USP10 ubiquitin specific peptidase 10 JBrowse link 6 3,977,235 4,043,539 RGD:14298760
G USP13 ubiquitin specific peptidase 13 JBrowse link 13 117,700,080 117,826,951 RGD:14298760
G USP33 ubiquitin specific peptidase 33 JBrowse link 6 135,524,372 135,589,742 RGD:14298760
G VPS29 VPS29 retromer complex component JBrowse link 14 31,860,661 31,869,614 RGD:9068941
G WDR24 WD repeat domain 24 JBrowse link 3 41,085,415 41,090,628 RGD:14298760
G WDR41 WD repeat domain 41 JBrowse link 2 86,322,933 86,380,619 RGD:14298760
G XBP1 X-box binding protein 1 JBrowse link 14 46,011,239 46,016,526 RGD:14298760
G XPA XPA, DNA damage recognition and repair factor JBrowse link 1 239,532,331 239,568,589 RGD:14298760
G ZMPSTE24 zinc metallopeptidase STE24 JBrowse link 6 96,008,307 96,057,131 RGD:14298760
regulation of autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BNIP3L BCL2 interacting protein 3 like JBrowse link 14 10,318,688 10,345,689 RGD:14298760
G CSNK2A2 casein kinase 2 alpha 2 JBrowse link 6 19,975,030 20,016,768 RGD:9068941
G CTTN cortactin JBrowse link 2 3,031,103 3,060,796 RGD:9068941
G DNM1L dynamin 1 like JBrowse link 5 41,571,054 41,636,058 RGD:9068941
G FBXW7 F-box and WD repeat domain containing 7 JBrowse link 8 76,482,027 76,699,354 RGD:14298760
G FZD5 frizzled class receptor 5 JBrowse link 15 110,913,990 110,921,388 RGD:9068941
G GSK3A glycogen synthase kinase 3 alpha JBrowse link 6 49,690,319 49,700,735 RGD:9068941
G PARL presenilin associated rhomboid like JBrowse link 13 121,758,734 121,813,679 RGD:14298760
G SREBF1 sterol regulatory element binding transcription factor 1 JBrowse link 12 60,733,967 60,750,951 RGD:14298760
G SREBF2 sterol regulatory element binding transcription factor 2 JBrowse link 5 6,719,484 6,784,724 RGD:9068941
G USP36 ubiquitin specific peptidase 36 JBrowse link 12 3,309,176 3,348,531 RGD:9068941
G VDAC1 voltage dependent anion channel 1 JBrowse link 2 136,302,188 136,334,461 RGD:14298760
regulation of chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GFAP glial fibrillary acidic protein JBrowse link 12 18,456,268 18,466,594 RGD:14298760
regulation of macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP13A2 ATPase cation transporting 13A2 JBrowse link 6 75,618,317 75,638,591 RGD:14298760
G ATP6V0A1 ATPase H+ transporting V0 subunit a1 JBrowse link 12 20,288,409 20,344,142 RGD:14298760
G HDAC6 histone deacetylase 6 JBrowse link X 42,917,911 42,941,894 RGD:9068941
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 6 155,683,392 155,754,283 RGD:14298760
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 1 5,698,508 6,731,132 RGD:14298760
G UBQLN1 ubiquilin 1 JBrowse link 10 31,275,916 31,317,521 RGD:14298760
G UBQLN2 ubiquilin 2 JBrowse link X 48,948,062 48,951,392 RGD:14298760
reticulophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DDRGK1 DDRGK domain containing 1 JBrowse link 17 32,479,981 32,491,401 RGD:9068941
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 4 77,593,204 77,649,551 RGD:14298760
G RETREG1 reticulophagy regulator 1 JBrowse link 16 5,726,493 5,879,461 RGD:14298760
G RETREG3 reticulophagy regulator family member 3 JBrowse link 12 20,220,993 20,243,299 RGD:14298760
G STING1 stimulator of interferon response cGAMP interactor 1 JBrowse link 2 141,359,402 141,367,222 RGD:14298760
G TEX264 testis expressed 264, ER-phagy receptor JBrowse link 13 33,892,557 33,924,175 RGD:14298760
G UBA5 ubiquitin like modifier activating enzyme 5 JBrowse link 13 73,831,485 73,859,781 RGD:9068941
G UFC1 ubiquitin-fold modifier conjugating enzyme 1 JBrowse link 4 89,296,281 89,311,331 RGD:9068941
G UFL1 UFM1 specific ligase 1 JBrowse link 1 63,638,589 63,698,931 RGD:9068941
G UFM1 ubiquitin fold modifier 1 JBrowse link 11 13,516,814 13,779,446 RGD:9068941
selective autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SQSTM1 sequestosome 1 JBrowse link 2 78,752,768 78,763,998 RGD:9068941
substrate localization to autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 3 6,037,732 6,142,569 RGD:9068941
suppression by virus of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG7 autophagy related 7 JBrowse link 13 67,301,756 67,699,141 RGD:14298760
xenophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATG16L1 autophagy related 16 like 1 JBrowse link 15 133,651,294 133,693,472 RGD:14298760
G CALCOCO2 calcium binding and coiled-coil domain 2 JBrowse link 12 25,050,008 25,080,230 RGD:14298760
G LGALS8 galectin 8 JBrowse link 14 54,867,014 54,892,188 RGD:14298760
G WIPI2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 3 3,800,170 3,830,973 RGD:14298760

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16412
    cellular process 15625
      process utilizing autophagic mechanism 403
        autophagy + 403
        cytoplasm to vacuole transport by the Cvt pathway + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.