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ONTOLOGY REPORT - ANNOTATIONS


Term:process utilizing autophagic mechanism
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Accession:GO:0061919 term browser browse the term
Definition:A cellular process involving delivery of a portion of the cytoplasm to lysosomes or to the plant or fungal vacuole that does not involve direct transport through the endocytic or vacuolar protein sorting (Vps) pathways. This process typically leads to degradation of the cargo; however, it can also be used to deliver resident proteins, such as in the cytoplasm-to-vacuole targeting (Cvt) pathway.


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aggrephagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acbd5 acyl-CoA binding domain containing 5 JBrowse link NW_004936484 2,224,308 2,268,302 RGD:9068941
G Atg5 autophagy related 5 JBrowse link NW_004936564 2,759,085 2,885,394 RGD:9068941
G Map1lc3c microtubule associated protein 1 light chain 3 gamma JBrowse link NW_004936526 8,492,840 8,497,028 RGD:9068941
G Sqstm1 sequestosome 1 JBrowse link NW_004936739 943,080 955,296 RGD:9068941
G Ubqln1 ubiquilin 1 JBrowse link NW_004936828 543,651 588,673 RGD:9068941
G Wdfy3 WD repeat and FYVE domain containing 3 JBrowse link NW_004936738 31,426 150,463 RGD:9068941
G Wdr81 WD repeat domain 81 JBrowse link NW_004936538 7,856,263 7,868,249 RGD:9068941
autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ambra1 autophagy and beclin 1 regulator 1 JBrowse link NW_004936562 2,493,823 2,676,868 RGD:9068941
G Atg101 autophagy related 101 JBrowse link NW_004936512 9,518,128 9,525,986 RGD:9068941
G Atg12 autophagy related 12 JBrowse link NW_004936742 1,000,029 1,007,885 RGD:9068941
G Atg13 autophagy related 13 JBrowse link NW_004936562 2,424,398 2,473,103 RGD:9068941
G Atg14 autophagy related 14 JBrowse link NW_004936495 155,709 195,860 RGD:9068941
G Atg16l2 autophagy related 16 like 2 JBrowse link NW_004936498 2,070,985 2,084,141 RGD:9068941
G Atg2a autophagy related 2A JBrowse link NW_004936599 4,417,810 4,437,639 RGD:9068941
G Atg3 autophagy related 3 JBrowse link NW_004936536 232,343 257,949 RGD:9068941
G Atg4b autophagy related 4B cysteine peptidase JBrowse link NW_004936745 291,311 308,469 RGD:9068941
G Atg5 autophagy related 5 JBrowse link NW_004936564 2,759,085 2,885,394 RGD:9068941
G Atg7 autophagy related 7 JBrowse link NW_004936602 1,938,720 2,179,239 RGD:9068941
G Atg9a autophagy related 9A JBrowse link NW_004936569 1,635,958 1,645,600 RGD:9068941
G Atg9b autophagy related 9B JBrowse link NW_004936527 6,445,824 6,453,582 RGD:9068941
G Bag3 BAG cochaperone 3 JBrowse link NW_004936486 8,985,871 9,007,461 RGD:9068941
G Becn1 beclin 1 JBrowse link NW_004936490 17,518,100 17,531,126 RGD:9068941
G Ctsd cathepsin D JBrowse link NW_004936816 680,798 690,959 RGD:9068941
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link NW_004936704 653,434 736,660 RGD:9068941
G Emc6 ER membrane protein complex subunit 6 JBrowse link NW_004936677 367,364 368,268 RGD:9068941
G Epm2a EPM2A glucan phosphatase, laforin JBrowse link NW_004936625 761,013 819,826 RGD:9068941
G Irgm immunity related GTPase M JBrowse link NW_004936504 4,055,091 4,056,089 RGD:9068941
G Map1lc3a microtubule associated protein 1 light chain 3 alpha JBrowse link NW_004936561 6,104,748 6,106,348 RGD:9068941
G Pacs2 phosphofurin acidic cluster sorting protein 2 JBrowse link NW_004936621 172,727 206,803 RGD:9068941
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link NW_004936517 4,009,938 4,145,518 RGD:9068941
G Psen1 presenilin 1 JBrowse link NW_004936488 2,464,623 2,528,807 RGD:9068941
G Rab1a RAB1A, member RAS oncogene family JBrowse link NW_004936491 9,858,645 9,891,674 RGD:9068941
G Rab23 RAB23, member RAS oncogene family JBrowse link NW_004936476 4,095,829 4,127,714 RGD:9068941
G Rab33b RAB33B, member RAS oncogene family JBrowse link NW_004936535 8,167,567 8,183,105 RGD:9068941
G Rab7a RAB7A, member RAS oncogene family JBrowse link NW_004936798 297,600 304,929 RGD:9068941
G Rb1cc1 RB1 inducible coiled-coil 1 JBrowse link NW_004936590 260,685 335,143 RGD:9068941
G Rufy4 RUN and FYVE domain containing 4 JBrowse link NW_004936569 654,904 676,012 RGD:9068941
G Sting1 stimulator of interferon response cGAMP interactor 1 JBrowse link NW_004936531 8,555,966 8,562,829 RGD:9068941
G Stx12 syntaxin 12 JBrowse link NW_004936474 12,019,099 12,057,028 RGD:9068941
G Synpo2 synaptopodin 2 JBrowse link NW_004936869 321,821 461,253 RGD:9068941
G Tmem41b transmembrane protein 41B JBrowse link NW_004936528 8,824,964 8,842,483 RGD:9068941
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 JBrowse link NW_004936561 5,984,044 5,992,536 RGD:9068941
G Ubqln1 ubiquilin 1 JBrowse link NW_004936828 543,651 588,673 RGD:9068941
G Ulk1 unc-51 like autophagy activating kinase 1 JBrowse link NW_004936660 2,160,394 2,188,848 RGD:9068941
G Vmp1 vacuole membrane protein 1 JBrowse link NW_004936490 3,532,985 3,648,009 RGD:9068941
G Wdr45 WD repeat domain 45 JBrowse link NW_004936721 975,113 981,149 RGD:9068941
G Wdr45b WD repeat domain 45B JBrowse link NW_004936923 173,515 192,616 RGD:9068941
G Wipi1 WD repeat domain, phosphoinositide interacting 1 JBrowse link NW_004936541 7,782,836 7,812,142 RGD:9068941
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link NW_004936765 909,118 946,788 RGD:9068941
autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link NW_004936501 11,955,334 11,967,338 RGD:9068941
G Epg5 ectopic P-granules autophagy protein 5 homolog JBrowse link NW_004936517 841,402 941,054 RGD:9068941
G Lamp2 lysosomal associated membrane protein 2 JBrowse link NW_004936479 9,584,221 9,622,330 RGD:9068941
G Map1lc3a microtubule associated protein 1 light chain 3 alpha JBrowse link NW_004936561 6,104,748 6,106,348 RGD:9068941
G Map1lc3c microtubule associated protein 1 light chain 3 gamma JBrowse link NW_004936526 8,492,840 8,497,028 RGD:9068941
G Mcoln1 mucolipin 1 JBrowse link NW_004936588 4,600,344 4,608,793 RGD:9068941
G Mfsd8 major facilitator superfamily domain containing 8 JBrowse link NW_004936642 2,745,889 2,833,286 RGD:9068941
G Rubcnl rubicon like autophagy enhancer JBrowse link NW_004936857 839,418 870,961 RGD:9068941
G Snap29 synaptosome associated protein 29 JBrowse link NW_004936619 2,377,284 2,402,049 RGD:9068941
G Snapin SNAP associated protein JBrowse link NW_004936580 3,449,585 3,464,709 RGD:9068941
G Snx14 sorting nexin 14 JBrowse link NW_004936510 5,685,342 5,786,672 RGD:9068941
G Stx17 syntaxin 17 JBrowse link NW_004936524 8,324,562 8,381,244 RGD:9068941
G Tecpr1 tectonin beta-propeller repeat containing 1 JBrowse link NW_004936750 756,602 781,422 RGD:9068941
G Ubqln1 ubiquilin 1 JBrowse link NW_004936828 543,651 588,673 RGD:9068941
G Uvrag UV radiation resistance associated JBrowse link NW_004936498 4,555,325 4,869,099 RGD:9068941
G Vamp7 vesicle associated membrane protein 7 JBrowse link NW_004936958 345,055 393,384 RGD:9068941
G Vamp8 vesicle associated membrane protein 8 JBrowse link NW_004936712 1,688,126 1,689,742 RGD:9068941
G Vcp valosin containing protein JBrowse link NW_004936524 3,085,959 3,102,461 RGD:9068941
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog JBrowse link NW_004936488 6,247,329 6,277,494 RGD:9068941
G Vps16 VPS16 core subunit of CORVET and HOPS complexes JBrowse link NW_004936485 15,879,324 15,900,544 RGD:9068941
G Vps33a VPS33A core subunit of CORVET and HOPS complexes JBrowse link NW_004936558 2,227,305 2,257,725 RGD:9068941
G Vps33b VPS33B late endosome and lysosome associated JBrowse link NW_004936483 16,007,448 16,031,353 RGD:9068941
G Vti1b vesicle transport through interaction with t-SNAREs 1B JBrowse link NW_004936495 11,043,813 11,064,113 RGD:9068941
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link NW_004936765 909,118 946,788 RGD:9068941
autophagosome membrane docking term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg14 autophagy related 14 JBrowse link NW_004936495 155,709 195,860 RGD:9068941
G Snap29 synaptosome associated protein 29 JBrowse link NW_004936619 2,377,284 2,402,049 RGD:9068941
G Stx17 syntaxin 17 JBrowse link NW_004936524 8,324,562 8,381,244 RGD:9068941
G Vamp8 vesicle associated membrane protein 8 JBrowse link NW_004936712 1,688,126 1,689,742 RGD:9068941
autophagosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp13a2 ATPase cation transporting 13A2 JBrowse link NW_004936474 3,968,216 3,980,821 RGD:9068941
G Gba glucosylceramidase beta JBrowse link NW_004936580 4,715,869 4,720,752 RGD:9068941
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha JBrowse link NW_004936528 1,845,372 1,964,908 RGD:9068941
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta JBrowse link NW_004936567 314,957 377,544 RGD:9068941
autophagosome-endosome fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rubcnl rubicon like autophagy enhancer JBrowse link NW_004936857 839,418 870,961 RGD:9068941
autophagosome-lysosome fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp13a2 ATPase cation transporting 13A2 JBrowse link NW_004936474 3,968,216 3,980,821 RGD:9068941
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link NW_004936501 11,955,334 11,967,338 RGD:9068941
G Rubcnl rubicon like autophagy enhancer JBrowse link NW_004936857 839,418 870,961 RGD:9068941
autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ambra1 autophagy and beclin 1 regulator 1 JBrowse link NW_004936562 2,493,823 2,676,868 RGD:9068941
G Anxa7 annexin A7 JBrowse link NW_004936521 5,639,193 5,671,369 RGD:9068941
G Arsa arylsulfatase A JBrowse link NW_004936629 187,281 205,493 RGD:9068941
G Arsb arylsulfatase B JBrowse link NW_004936549 6,654,259 6,827,647 RGD:9068941
G Atg10 autophagy related 10 JBrowse link NW_004936469 1,241,854 1,506,174 RGD:9068941
G Atg12 autophagy related 12 JBrowse link NW_004936742 1,000,029 1,007,885 RGD:9068941
G Atg14 autophagy related 14 JBrowse link NW_004936495 155,709 195,860 RGD:9068941
G Atg16l2 autophagy related 16 like 2 JBrowse link NW_004936498 2,070,985 2,084,141 RGD:9068941
G Atg3 autophagy related 3 JBrowse link NW_004936536 232,343 257,949 RGD:9068941
G Atg4b autophagy related 4B cysteine peptidase JBrowse link NW_004936745 291,311 308,469 RGD:9068941
G Atg5 autophagy related 5 JBrowse link NW_004936564 2,759,085 2,885,394 RGD:9068941
G Atg7 autophagy related 7 JBrowse link NW_004936602 1,938,720 2,179,239 RGD:9068941
G Atg9a autophagy related 9A JBrowse link NW_004936569 1,635,958 1,645,600 RGD:9068941
G Atp13a2 ATPase cation transporting 13A2 JBrowse link NW_004936474 3,968,216 3,980,821 RGD:9068941
G Becn1 beclin 1 JBrowse link NW_004936490 17,518,100 17,531,126 RGD:9068941
G Becn2 beclin 2 JBrowse link NW_004936526 8,532,991 8,534,271 RGD:9068941
G C9orf72 C9orf72-SMCR8 complex subunit JBrowse link NW_004936611 2,074,655 2,101,846 RGD:9068941
G Chmp4b charged multivesicular body protein 4B JBrowse link NW_004936561 6,756,360 6,798,964 RGD:9068941
G CUNH19orf12 chromosome unknown C19orf12 homolog JBrowse link NW_004936570 5,628,593 5,640,982 RGD:9068941
G Drd2 dopamine receptor D2 JBrowse link NW_004936612 1,094,686 1,154,149 RGD:9068941
G Drd3 dopamine receptor D3 JBrowse link NW_004936536 1,580,732 1,616,726 RGD:9068941
G Ei24 EI24 autophagy associated transmembrane protein JBrowse link NW_004936743 1,957,948 1,970,885 RGD:9068941
G Epg5 ectopic P-granules autophagy protein 5 homolog JBrowse link NW_004936517 841,402 941,054 RGD:9068941
G Epm2a EPM2A glucan phosphatase, laforin JBrowse link NW_004936625 761,013 819,826 RGD:9068941
G Gba glucosylceramidase beta JBrowse link NW_004936580 4,715,869 4,720,752 RGD:9068941
G Itgb4 integrin subunit beta 4 JBrowse link NW_004936594 912,302 944,819 RGD:9068941
G Lamp2 lysosomal associated membrane protein 2 JBrowse link NW_004936479 9,584,221 9,622,330 RGD:9068941
G Map1lc3a microtubule associated protein 1 light chain 3 alpha JBrowse link NW_004936561 6,104,748 6,106,348 RGD:9068941
G Nhlrc1 NHL repeat containing E3 ubiquitin protein ligase 1 JBrowse link NW_004936552 3,891,350 3,893,566 RGD:9068941
G Npc1 NPC intracellular cholesterol transporter 1 JBrowse link NW_004936550 2,983,172 3,032,222 RGD:9068941
G Nrbf2 nuclear receptor binding factor 2 JBrowse link NW_004936753 1,653,394 1,671,996 RGD:9068941
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link NW_004936517 4,009,938 4,145,518 RGD:9068941
G Pmp22 peripheral myelin protein 22 JBrowse link NW_004936724 1,747,015 1,780,298 RGD:9068941
G Psen1 presenilin 1 JBrowse link NW_004936488 2,464,623 2,528,807 RGD:9068941
G Rab1a RAB1A, member RAS oncogene family JBrowse link NW_004936491 9,858,645 9,891,674 RGD:9068941
G Rb1cc1 RB1 inducible coiled-coil 1 JBrowse link NW_004936590 260,685 335,143 RGD:9068941
G S100a8 S100 calcium binding protein A8 JBrowse link NW_004936580 3,256,399 3,256,913 RGD:9068941
G S100a9 S100 calcium binding protein A9 JBrowse link NW_004936580 3,228,097 3,230,652 RGD:9068941
G Sqstm1 sequestosome 1 JBrowse link NW_004936739 943,080 955,296 RGD:9068941
G Srpx sushi repeat containing protein X-linked JBrowse link NW_004936502 5,010,692 5,107,221 RGD:9068941
G Syt11 synaptotagmin 11 JBrowse link NW_004936580 5,123,196 5,142,976 RGD:9068941
G Tbc1d5 TBC1 domain family member 5 JBrowse link NW_004936473 9,868,657 10,294,554 RGD:9068941
G Tecpr1 tectonin beta-propeller repeat containing 1 JBrowse link NW_004936750 756,602 781,422 RGD:9068941
G Tp53 tumor protein p53 JBrowse link NW_004936595 919,807 935,367 RGD:9068941
G Trappc4 trafficking protein particle complex 4 JBrowse link NW_004936542 3,977,223 3,980,168 RGD:9068941
G Trim17 tripartite motif containing 17 JBrowse link NW_004937135 21,149 28,188 RGD:9068941
G Ulk1 unc-51 like autophagy activating kinase 1 JBrowse link NW_004936660 2,160,394 2,188,848 RGD:9068941
G Ulk2 unc-51 like autophagy activating kinase 2 JBrowse link NW_004936821 1,051,247 1,162,500 RGD:9068941
G Umod uromodulin JBrowse link NW_004936501 5,833,391 5,846,021 RGD:9068941
G Uvrag UV radiation resistance associated JBrowse link NW_004936498 4,555,325 4,869,099 RGD:9068941
G Vcp valosin containing protein JBrowse link NW_004936524 3,085,959 3,102,461 RGD:9068941
G Vmp1 vacuole membrane protein 1 JBrowse link NW_004936490 3,532,985 3,648,009 RGD:9068941
G Vps13a vacuolar protein sorting 13 homolog A JBrowse link NW_004936503 12,606,019 12,857,807 RGD:9068941
G Vps39 VPS39 subunit of HOPS complex JBrowse link NW_004936471 5,457,363 5,512,966 RGD:9068941
G Vps51 VPS51 subunit of GARP complex JBrowse link NW_004936599 4,258,239 4,274,823 RGD:9068941
G Vti1a vesicle transport through interaction with t-SNAREs 1A JBrowse link NW_004936486 3,010,169 3,353,512 RGD:9068941
G Wdr45 WD repeat domain 45 JBrowse link NW_004936721 975,113 981,149 RGD:9068941
G Wipi1 WD repeat domain, phosphoinositide interacting 1 JBrowse link NW_004936541 7,782,836 7,812,142 RGD:9068941
autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ambra1 autophagy and beclin 1 regulator 1 JBrowse link NW_004936562 2,493,823 2,676,868 RGD:9068941
G Atg5 autophagy related 5 JBrowse link NW_004936564 2,759,085 2,885,394 RGD:9068941
G Atg7 autophagy related 7 JBrowse link NW_004936602 1,938,720 2,179,239 RGD:9068941
G Becn1 beclin 1 JBrowse link NW_004936490 17,518,100 17,531,126 RGD:9068941
G Capn10 calpain 10 JBrowse link NW_004936745 1,029,514 1,039,524 RGD:9068941
G Cisd2 CDGSH iron sulfur domain 2 JBrowse link NW_004936520 514,747 527,576 RGD:9068941
G Ctsk cathepsin K JBrowse link NW_004936580 1,022,762 1,038,020 RGD:9068941
G Fbxo7 F-box protein 7 JBrowse link NW_004936492 7,261,442 7,276,779 RGD:9068941
G Fis1 fission, mitochondrial 1 JBrowse link NW_004936543 1,112,746 1,116,521 RGD:9068941
G Fundc1 FUN14 domain containing 1 JBrowse link NW_004936502 10,643,172 10,657,118 RGD:9068941
G Map1lc3a microtubule associated protein 1 light chain 3 alpha JBrowse link NW_004936561 6,104,748 6,106,348 RGD:9068941
G Pink1 PTEN induced kinase 1 JBrowse link NW_004936474 6,574,471 6,589,478 RGD:9068941
G Ppargc1a PPARG coactivator 1 alpha JBrowse link NW_004936477 4,881,230 5,488,208 RGD:9068941
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link NW_004936489 12,118,538 12,913,664 RGD:9068941
G Slc25a46 solute carrier family 25 member 46 JBrowse link NW_004936531 5,177,750 5,201,362 RGD:9068941
G Usp30 ubiquitin specific peptidase 30 JBrowse link NW_004936769 874,188 902,690 RGD:9068941
autophagy of peroxisome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acbd5 acyl-CoA binding domain containing 5 JBrowse link NW_004936484 2,224,308 2,268,302 RGD:9068941
chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg5 autophagy related 5 JBrowse link NW_004936564 2,759,085 2,885,394 RGD:9068941
G Atg7 autophagy related 7 JBrowse link NW_004936602 1,938,720 2,179,239 RGD:9068941
G Bag3 BAG cochaperone 3 JBrowse link NW_004936486 8,985,871 9,007,461 RGD:9068941
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link NW_004936542 7,577,192 7,581,598 RGD:9068941
G Lamp2 lysosomal associated membrane protein 2 JBrowse link NW_004936479 9,584,221 9,622,330 RGD:9068941
G Stub1 STIP1 homology and U-box containing protein 1 JBrowse link NW_004936501 328,767 330,963 RGD:9068941
G Synpo2 synaptopodin 2 JBrowse link NW_004936869 321,821 461,253 RGD:9068941
chaperone-mediated protein transport involved in chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link NW_004936542 7,577,192 7,581,598 RGD:9068941
engulfment of target by autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link NW_004936750 1,381,864 1,406,736 RGD:9068941
glycophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Stbd1 starch binding domain 1 JBrowse link NW_004936676 300,244 304,206 RGD:9068941
induction by virus of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 JBrowse link NW_004936471 3,423,792 3,527,089 RGD:9068941
G Phb2 prohibitin 2 JBrowse link NW_004936709 854,493 859,182 RGD:9068941
late endosomal microautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link NW_004936542 7,577,192 7,581,598 RGD:9068941
G Vps4a vacuolar protein sorting 4 homolog A JBrowse link NW_004936475 19,432,311 19,444,223 RGD:9068941
G Vps4b vacuolar protein sorting 4 homolog B JBrowse link NW_004936497 2,126,064 2,161,451 RGD:9068941
lipophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aup1 AUP1 lipid droplet regulating VLDL assembly factor JBrowse link NW_004936556 738,946 742,049 RGD:9068941
G Rab7a RAB7A, member RAS oncogene family JBrowse link NW_004936798 297,600 304,929 RGD:9068941
macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acbd5 acyl-CoA binding domain containing 5 JBrowse link NW_004936484 2,224,308 2,268,302 RGD:9068941
G Atg14 autophagy related 14 JBrowse link NW_004936495 155,709 195,860 RGD:9068941
G Atg3 autophagy related 3 JBrowse link NW_004936536 232,343 257,949 RGD:9068941
G Atg5 autophagy related 5 JBrowse link NW_004936564 2,759,085 2,885,394 RGD:9068941
G Atg7 autophagy related 7 JBrowse link NW_004936602 1,938,720 2,179,239 RGD:9068941
G Becn1 beclin 1 JBrowse link NW_004936490 17,518,100 17,531,126 RGD:9068941
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link NW_004936501 11,955,334 11,967,338 RGD:9068941
G Hdac10 histone deacetylase 10 JBrowse link NW_004936629 562,038 567,709 RGD:9068941
G Map1lc3a microtubule associated protein 1 light chain 3 alpha JBrowse link NW_004936561 6,104,748 6,106,348 RGD:9068941
G Map1lc3c microtubule associated protein 1 light chain 3 gamma JBrowse link NW_004936526 8,492,840 8,497,028 RGD:9068941
G Nbr1 NBR1 autophagy cargo receptor JBrowse link NW_004936490 17,803,074 17,832,349 RGD:9068941
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha JBrowse link NW_004936528 1,845,372 1,964,908 RGD:9068941
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta JBrowse link NW_004936567 314,957 377,544 RGD:9068941
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link NW_004936517 4,009,938 4,145,518 RGD:9068941
G Plaa phospholipase A2 activating protein JBrowse link NW_004936611 2,665,294 2,698,372 RGD:9068941
G Sqstm1 sequestosome 1 JBrowse link NW_004936739 943,080 955,296 RGD:9068941
G Tbc1d5 TBC1 domain family member 5 JBrowse link NW_004936473 9,868,657 10,294,554 RGD:9068941
G Tcirg1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 JBrowse link NW_004936599 2,070,211 2,079,169 RGD:9068941
G Tmem74 transmembrane protein 74 JBrowse link NW_004936470 36,084,902 36,091,517 RGD:9068941
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 JBrowse link NW_004936561 5,984,044 5,992,536 RGD:9068941
G Ubqln1 ubiquilin 1 JBrowse link NW_004936828 543,651 588,673 RGD:9068941
G Ubxn6 UBX domain protein 6 JBrowse link NW_004936588 2,565,473 2,578,721 RGD:9068941
G Ulk1 unc-51 like autophagy activating kinase 1 JBrowse link NW_004936660 2,160,394 2,188,848 RGD:9068941
G Vcp valosin containing protein JBrowse link NW_004936524 3,085,959 3,102,461 RGD:9068941
G Yod1 YOD1 deubiquitinase JBrowse link NW_004936557 5,585,481 5,593,782 RGD:9068941
G Zfyve1 zinc finger FYVE-type containing 1 JBrowse link NW_004936488 2,304,521 2,364,472 RGD:9068941
mitophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ambra1 autophagy and beclin 1 regulator 1 JBrowse link NW_004936562 2,493,823 2,676,868 RGD:9068941
G Atg13 autophagy related 13 JBrowse link NW_004936562 2,424,398 2,473,103 RGD:9068941
G Atg14 autophagy related 14 JBrowse link NW_004936495 155,709 195,860 RGD:9068941
G Becn1 beclin 1 JBrowse link NW_004936490 17,518,100 17,531,126 RGD:9068941
G Phb2 prohibitin 2 JBrowse link NW_004936709 854,493 859,182 RGD:9068941
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link NW_004936489 12,118,538 12,913,664 RGD:9068941
G Sqstm1 sequestosome 1 JBrowse link NW_004936739 943,080 955,296 RGD:9068941
G Ulk1 unc-51 like autophagy activating kinase 1 JBrowse link NW_004936660 2,160,394 2,188,848 RGD:9068941
mitophagy by induced vacuole formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Spata18 spermatogenesis associated 18 JBrowse link NW_004936482 15,178,667 15,262,897 RGD:9068941
negative regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Becn1 beclin 1 JBrowse link NW_004936490 17,518,100 17,531,126 RGD:9068941
G Chmp4a charged multivesicular body protein 4A JBrowse link NW_004936722 341,066 344,928 RGD:9068941
G Chmp4b charged multivesicular body protein 4B JBrowse link NW_004936561 6,756,360 6,798,964 RGD:9068941
G Ehmt2 euchromatic histone lysine methyltransferase 2 JBrowse link NW_004936727 1,648,451 1,663,294 RGD:9068941
G Fez1 fasciculation and elongation protein zeta 1 JBrowse link NW_004936743 1,871,808 1,917,370 RGD:9068941
G Fez2 fasciculation and elongation protein zeta 2 JBrowse link NW_004936663 1,576,311 1,637,363 RGD:9068941
G Lrrk2 leucine rich repeat kinase 2 JBrowse link NW_004936607 628,469 761,117 RGD:9068941
G Mtm1 myotubularin 1 JBrowse link NW_004936714 1,792,893 1,870,338 RGD:9068941
G Nupr1 nuclear protein 1, transcriptional regulator JBrowse link NW_004936501 11,998,064 11,999,431 RGD:9068941
G Phf23 PHD finger protein 23 JBrowse link NW_004936595 528,832 533,212 RGD:9068941
G Pink1 PTEN induced kinase 1 JBrowse link NW_004936474 6,574,471 6,589,478 RGD:9068941
G Scfd1 sec1 family domain containing 1 JBrowse link NW_004936494 5,410,219 5,501,687 RGD:9068941
G Sec22b SEC22 homolog B, vesicle trafficking protein JBrowse link NW_004936872 294,116 313,893 RGD:9068941
G Smcr8 SMCR8-C9orf72 complex subunit JBrowse link NW_004936741 1,838,974 1,848,742 RGD:9068941
G Tmem39a transmembrane protein 39A JBrowse link NW_004936536 6,376,539 6,406,314 RGD:9068941
negative regulation of autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clec16a C-type lectin domain containing 16A JBrowse link NW_004936530 9,089,478 9,264,563 RGD:9068941
G Phf23 PHD finger protein 23 JBrowse link NW_004936595 528,832 533,212 RGD:9068941
G Rubcn rubicon autophagy regulator JBrowse link NW_004936784 370,173 438,263 RGD:9068941
G Tmem39a transmembrane protein 39A JBrowse link NW_004936536 6,376,539 6,406,314 RGD:9068941
G Ubqln4 ubiquilin 4 JBrowse link NW_004936580 5,299,864 5,316,583 RGD:9068941
negative regulation of autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adra1a adrenoceptor alpha 1A JBrowse link NW_004936757 149,366 237,710 RGD:9068941
G Akt1 AKT serine/threonine kinase 1 JBrowse link NW_004936621 620,163 639,115 RGD:9068941
G Bcl2 BCL2 apoptosis regulator JBrowse link NW_004936497 2,209,136 2,373,580 RGD:9068941
G Becn1 beclin 1 JBrowse link NW_004936490 17,518,100 17,531,126 RGD:9068941
G Bmf Bcl2 modifying factor JBrowse link NW_004936471 3,573,437 3,594,438 RGD:9068941
G Cptp ceramide-1-phosphate transfer protein JBrowse link NW_004936737 1,816,461 1,820,353 RGD:9068941
G Eif4e eukaryotic translation initiation factor 4E JBrowse link NW_004936520 3,922,457 3,964,721 RGD:9068941
G Eif4g1 eukaryotic translation initiation factor 4 gamma 1 JBrowse link NW_004936578 5,548,526 5,567,220 RGD:9068941
G Eif4g2 eukaryotic translation initiation factor 4 gamma 2 JBrowse link NW_004936528 7,563,965 7,574,630 RGD:9068941
G Eif4g3 eukaryotic translation initiation factor 4 gamma 3 JBrowse link NW_004936474 6,718,719 7,004,066 RGD:9068941
G Foxk1 forkhead box K1 JBrowse link NW_004936765 1,126,168 1,255,354 RGD:9068941
G Foxk2 forkhead box K2 JBrowse link NW_004936923 109,973 166,952 RGD:9068941
G Gata4 GATA binding protein 4 JBrowse link NW_004936675 3,408,549 3,420,828 RGD:9068941
G Golga2 golgin A2 JBrowse link NW_004936487 15,798,623 15,814,360 RGD:9068941
G Herc1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 JBrowse link NW_004936471 24,142,227 24,330,966 RGD:9068941
G Htr2b 5-hydroxytryptamine receptor 2B JBrowse link NW_004936525 5,711,894 5,729,074 RGD:9068941
G Il10 interleukin 10 JBrowse link NW_004936557 5,834,874 5,838,502 RGD:9068941
G Il10ra interleukin 10 receptor subunit alpha JBrowse link NW_004936542 3,099,484 3,113,159 RGD:9068941
G Il3 interleukin 3 JBrowse link NW_004936647 3,102,922 3,104,758 RGD:9068941
G Kdm4a lysine demethylase 4A JBrowse link NW_004936474 25,002,527 25,056,642 RGD:9068941
G Kif25 kinesin family member 25 JBrowse link NW_004936489 16,834,102 16,867,902 RGD:9068941
G Klhl22 kelch like family member 22 JBrowse link NW_004936619 2,854,915 2,899,386 RGD:9068941
G Lep leptin JBrowse link NW_004936479 15,394,966 15,411,334 RGD:9068941
G Lepr leptin receptor JBrowse link NW_004936591 5,771,371 5,846,177 RGD:9068941
G Mcl1 MCL1 apoptosis regulator, BCL2 family member JBrowse link NW_004936580 803,452 806,966 RGD:9068941
G Mt3 metallothionein 3 JBrowse link NW_004936475 8,864,512 8,866,516 RGD:9068941
G Mtmr8 myotubularin related protein 8 JBrowse link NW_004936635 3,336,218 3,415,998 RGD:9068941
G Mtmr9 myotubularin related protein 9 JBrowse link NW_004936675 3,035,221 3,080,419 RGD:9068941
G Mtor mechanistic target of rapamycin kinase JBrowse link NW_004936474 158,376 282,310 RGD:9068941
G Nampt nicotinamide phosphoribosyltransferase JBrowse link NW_004936479 17,682,070 17,716,713 RGD:9068941
G Nupr1 nuclear protein 1, transcriptional regulator JBrowse link NW_004936501 11,998,064 11,999,431 RGD:9068941
G Ptk2 protein tyrosine kinase 2 JBrowse link NW_004936470 10,379,855 10,578,531 RGD:9068941
G Ptpn22 protein tyrosine phosphatase non-receptor type 22 JBrowse link NW_004936690 2,180,804 2,232,869 RGD:9068941
G Rasip1 Ras interacting protein 1 JBrowse link NW_004936664 2,743,568 2,754,618 RGD:9068941
G Rnf5 ring finger protein 5 JBrowse link NW_004936727 1,422,207 1,424,808 RGD:9068941
G Rraga Ras related GTP binding A JBrowse link NW_004936652 991,832 993,439 RGD:9068941
G Rubcn rubicon autophagy regulator JBrowse link NW_004936784 370,173 438,263 RGD:9068941
G Sirt2 sirtuin 2 JBrowse link NW_004936661 1,828,868 1,849,892 RGD:9068941
G Stat3 signal transducer and activator of transcription 3 JBrowse link NW_004936490 17,119,189 17,178,402 RGD:9068941
G Tbc1d14 TBC1 domain family member 14 JBrowse link NW_004936477 18,761,034 18,864,578 RGD:9068941
G Trem2 triggering receptor expressed on myeloid cells 2 JBrowse link NW_004936476 18,659,725 18,665,406 RGD:9068941
G Washc1 WASH complex subunit 1 JBrowse link NW_004936606 209,289 228,986 RGD:9068941
G Wdr6 WD repeat domain 6 JBrowse link NW_004936529 731,958 741,334 RGD:9068941
negative regulation of autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pink1 PTEN induced kinase 1 JBrowse link NW_004936474 6,574,471 6,589,478 RGD:9068941
G Tspo translocator protein JBrowse link NW_004936718 992,301 995,172 RGD:9068941
negative regulation of chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctsa cathepsin A JBrowse link NW_004936514 7,131,263 7,136,775 RGD:9068941
G Snca synuclein alpha JBrowse link NW_004936685 2,077,017 2,175,298 RGD:9068941
negative regulation of macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hmox1 heme oxygenase 1 JBrowse link NW_004936492 5,042,353 5,049,216 RGD:9068941
G Lrrk2 leucine rich repeat kinase 2 JBrowse link NW_004936607 628,469 761,117 RGD:9068941
G Lzts1 leucine zipper tumor suppressor 1 JBrowse link NW_004936555 4,330,878 4,384,883 RGD:9068941
G Mtor mechanistic target of rapamycin kinase JBrowse link NW_004936474 158,376 282,310 RGD:9068941
G Npc1 NPC intracellular cholesterol transporter 1 JBrowse link NW_004936550 2,983,172 3,032,222 RGD:9068941
G Nrbp2 nuclear receptor binding protein 2 JBrowse link NW_004936470 8,327,326 8,333,573 RGD:9068941
G Pink1 PTEN induced kinase 1 JBrowse link NW_004936474 6,574,471 6,589,478 RGD:9068941
G Poldip2 DNA polymerase delta interacting protein 2 JBrowse link NW_004936538 4,504,039 4,512,785 RGD:9068941
G Qsox1 quiescin sulfhydryl oxidase 1 JBrowse link NW_004936481 8,975,818 9,013,684 RGD:9068941
G Smcr8 SMCR8-C9orf72 complex subunit JBrowse link NW_004936741 1,838,974 1,848,742 RGD:9068941
G Tsc1 TSC complex subunit 1 JBrowse link NW_004936487 19,331,183 19,386,841 RGD:9068941
G Tsc2 TSC complex subunit 2 JBrowse link NW_004936694 1,958,152 1,993,373 RGD:9068941
G Usp36 ubiquitin specific peptidase 36 JBrowse link NW_004936594 3,194,842 3,228,701 RGD:9068941
negative regulation of macroautophagy by TORC1 signaling term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clec16a C-type lectin domain containing 16A JBrowse link NW_004936530 9,089,478 9,264,563 RGD:9068941
negative regulation of mitophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clec16a C-type lectin domain containing 16A JBrowse link NW_004936530 9,089,478 9,264,563 RGD:9068941
G Rnf41 ring finger protein 41 JBrowse link NW_004936646 605,302 630,645 RGD:9068941
G Tigar TP53 induced glycolysis regulatory phosphatase JBrowse link NW_004936606 4,518,525 4,540,109 RGD:9068941
G Tp53 tumor protein p53 JBrowse link NW_004936595 919,807 935,367 RGD:9068941
G Usp30 ubiquitin specific peptidase 30 JBrowse link NW_004936769 874,188 902,690 RGD:9068941
negative regulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Htra2 HtrA serine peptidase 2 JBrowse link NW_004936556 741,718 746,016 RGD:9068941
negative regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Vps13c vacuolar protein sorting 13 homolog C JBrowse link NW_004936471 22,661,899 22,842,144 RGD:9068941
parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hdac6 histone deacetylase 6 JBrowse link NW_004936721 757,500 778,416 RGD:9068941
G LOC101956249 optineurin JBrowse link NW_004936862 488,591 516,819 RGD:9068941
G Mfn2 mitofusin 2 JBrowse link NW_004936474 767,754 795,258 RGD:9068941
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link NW_004936489 12,118,538 12,913,664 RGD:9068941
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link NW_004936750 1,381,864 1,406,736 RGD:9068941
positive regulation by symbiont of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg5 autophagy related 5 JBrowse link NW_004936564 2,759,085 2,885,394 RGD:9068941
G Atg7 autophagy related 7 JBrowse link NW_004936602 1,938,720 2,179,239 RGD:9068941
G Irgm immunity related GTPase M JBrowse link NW_004936504 4,055,091 4,056,089 RGD:9068941
G Ulk1 unc-51 like autophagy activating kinase 1 JBrowse link NW_004936660 2,160,394 2,188,848 RGD:9068941
G Ulk2 unc-51 like autophagy activating kinase 2 JBrowse link NW_004936821 1,051,247 1,162,500 RGD:9068941
positive regulation of aggrephagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bag3 BAG cochaperone 3 JBrowse link NW_004936486 8,985,871 9,007,461 RGD:9068941
G Htt huntingtin JBrowse link NW_004936477 20,443,101 20,577,167 RGD:9068941
G LOC101965479 uncharacterized LOC101965479 JBrowse link NW_004936668 1,496,600 1,505,650 RGD:9068941
positive regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Becn1 beclin 1 JBrowse link NW_004936490 17,518,100 17,531,126 RGD:9068941
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link NW_004936704 653,434 736,660 RGD:9068941
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link NW_004936487 15,181,009 15,217,952 RGD:9068941
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha JBrowse link NW_004936520 5,383,737 5,540,176 RGD:9068941
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta JBrowse link NW_004936490 14,168,951 14,201,712 RGD:9068941
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma JBrowse link NW_004936646 1,737,088 1,748,056 RGD:9068941
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 JBrowse link NW_004936469 40,642,240 40,727,831 RGD:9068941
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 JBrowse link NW_004936650 1,944,291 2,054,847 RGD:9068941
G Ralb RAS like proto-oncogene B JBrowse link NW_004936469 50,237,804 50,279,483 RGD:9068941
G Sh3glb1 SH3 domain containing GRB2 like, endophilin B1 JBrowse link NW_004936732 2,066,848 2,097,947 RGD:9068941
G Ulk1 unc-51 like autophagy activating kinase 1 JBrowse link NW_004936660 2,160,394 2,188,848 RGD:9068941
positive regulation of autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adrb2 adrenoceptor beta 2 JBrowse link NW_004936504 5,985,407 5,987,453 RGD:9068941
G Calcoco2 calcium binding and coiled-coil domain 2 JBrowse link NW_004936490 12,576,752 12,609,273 RGD:9068941
G Clec16a C-type lectin domain containing 16A JBrowse link NW_004936530 9,089,478 9,264,563 RGD:9068941
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 JBrowse link NW_004936596 3,938 81,226 RGD:9068941
G Irgm immunity related GTPase M JBrowse link NW_004936504 4,055,091 4,056,089 RGD:9068941
G Smcr8 SMCR8-C9orf72 complex subunit JBrowse link NW_004936741 1,838,974 1,848,742 RGD:9068941
positive regulation of autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ager advanced glycosylation end-product specific receptor JBrowse link NW_004936727 1,418,342 1,422,005 RGD:9068941
G Ambra1 autophagy and beclin 1 regulator 1 JBrowse link NW_004936562 2,493,823 2,676,868 RGD:9068941
G Atg16l1 autophagy related 16 like 1 JBrowse link NW_004936525 3,973,574 4,010,442 RGD:9068941
G Atg7 autophagy related 7 JBrowse link NW_004936602 1,938,720 2,179,239 RGD:9068941
G Becn1 beclin 1 JBrowse link NW_004936490 17,518,100 17,531,126 RGD:9068941
G Dapk1 death associated protein kinase 1 JBrowse link NW_004936680 2,842,930 3,020,757 RGD:9068941
G Dcn decorin JBrowse link NW_004936507 7,887,259 7,923,055 RGD:9068941
G Dhrsx dehydrogenase/reductase X-linked JBrowse link NW_004936644 3,625,705 3,652,759 RGD:9068941
G Flcn folliculin JBrowse link NW_004936741 881,150 901,296 RGD:9068941
G Foxo1 forkhead box O1 JBrowse link NW_004936565 5,210,014 5,299,213 RGD:9068941
G Foxo3 forkhead box O3 JBrowse link NW_004936564 4,788,036 4,907,600 RGD:9068941
G Gsk3a glycogen synthase kinase 3 alpha JBrowse link NW_004936706 266,462 277,256 RGD:9068941
G Gsk3b glycogen synthase kinase 3 beta JBrowse link NW_004936536 6,730,070 6,893,818 RGD:9068941
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link NW_004936495 5,770,988 5,816,157 RGD:9068941
G Hmgb1 high mobility group box 1 JBrowse link NW_004936472 25,236,728 25,246,585 RGD:9068941
G Ifng interferon gamma JBrowse link NW_004936545 6,139,130 6,144,543 RGD:9068941
G Irgm immunity related GTPase M JBrowse link NW_004936504 4,055,091 4,056,089 RGD:9068941
G Kat5 lysine acetyltransferase 5 JBrowse link NW_004936599 3,767,526 3,775,416 RGD:9068941
G LOC101956249 optineurin JBrowse link NW_004936862 488,591 516,819 RGD:9068941
G Lrrk2 leucine rich repeat kinase 2 JBrowse link NW_004936607 628,469 761,117 RGD:9068941
G Map2k1 mitogen-activated protein kinase kinase 1 JBrowse link NW_004936471 26,589,251 26,628,302 RGD:9068941
G Mefv MEFV innate immuity regulator, pyrin JBrowse link NW_004936694 970,706 980,605 RGD:9068941
G Mid2 midline 2 JBrowse link NW_004936499 6,833,328 6,926,531 RGD:9068941
G Mtdh metadherin JBrowse link NW_004936470 45,016,099 45,079,709 RGD:9068941
G Ormdl3 ORMDL sphingolipid biosynthesis regulator 3 JBrowse link NW_004936490 15,069,435 15,076,112 RGD:9068941
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha JBrowse link NW_004936528 1,845,372 1,964,908 RGD:9068941
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase JBrowse link NW_004936721 839,876 844,488 RGD:9068941
G Plekhf1 pleckstrin homology and FYVE domain containing 1 JBrowse link NW_004936570 5,658,052 5,666,711 RGD:9068941
G Plk2 polo like kinase 2 JBrowse link NW_004936480 9,680,461 9,686,593 RGD:9068941
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link NW_004936518 1,817,051 1,843,376 RGD:9068941
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link NW_004936522 4,872,360 4,939,873 RGD:9068941
G Prkd1 protein kinase D1 JBrowse link NW_004936494 4,469,092 4,601,183 RGD:9068941
G Rnf152 ring finger protein 152 JBrowse link NW_004936497 3,357,464 3,421,813 RGD:9068941
G Rock1 Rho associated coiled-coil containing protein kinase 1 JBrowse link NW_004936550 730,462 874,601 RGD:9068941
G Sh3bp4 SH3 domain binding protein 4 JBrowse link NW_004936525 2,693,828 2,757,480 RGD:9068941
G Sh3glb1 SH3 domain containing GRB2 like, endophilin B1 JBrowse link NW_004936732 2,066,848 2,097,947 RGD:9068941
G Stk11 serine/threonine kinase 11 JBrowse link NW_004936588 579,816 601,033 RGD:9068941
G Svip small VCP interacting protein JBrowse link NW_004936654 3,452,781 3,459,161 RGD:9068941
G Tfeb transcription factor EB JBrowse link NW_004936476 18,189,096 18,233,622 RGD:9068941
G Ticam1 toll like receptor adaptor molecule 1 JBrowse link NW_004936588 2,818,909 2,827,797 RGD:9068941
G Tmem59 transmembrane protein 59 JBrowse link NW_004936522 7,105,240 7,126,701 RGD:9068941
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 JBrowse link NW_004936544 7,882,710 7,891,668 RGD:9068941
G Tpcn1 two pore segment channel 1 JBrowse link NW_004936668 3,111,038 3,162,163 RGD:9068941
G Trim21 tripartite motif containing 21 JBrowse link NW_004936498 690,481 697,305 RGD:9068941
G Trim65 tripartite motif containing 65 JBrowse link NW_004936594 1,053,651 1,077,224 RGD:9068941
G Trim8 tripartite motif containing 8 JBrowse link NW_004936600 3,244,888 3,259,042 RGD:9068941
G Tsc2 TSC complex subunit 2 JBrowse link NW_004936694 1,958,152 1,993,373 RGD:9068941
G Ufl1 UFM1 specific ligase 1 JBrowse link NW_004936699 1,131,385 1,163,310 RGD:9068941
G Ulk1 unc-51 like autophagy activating kinase 1 JBrowse link NW_004936660 2,160,394 2,188,848 RGD:9068941
G Xbp1 X-box binding protein 1 JBrowse link NW_004936657 2,891,171 2,895,409 RGD:9068941
G Zc3h12a zinc finger CCCH-type containing 12A JBrowse link NW_004936474 19,714,145 19,722,512 RGD:9068941
positive regulation of autophagy in response to ER overload term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2l11 BCL2 like 11 JBrowse link NW_004936783 15,493 50,959 RGD:9068941
G Bid BH3 interacting domain death agonist JBrowse link NW_004936807 708,340 750,127 RGD:9068941
G Ddit3 DNA damage inducible transcript 3 JBrowse link NW_004936646 1,665,019 1,669,212 RGD:9068941
positive regulation of autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bnip3 BCL2 interacting protein 3 JBrowse link NW_004936486 18,449,371 18,460,435 RGD:9068941
G Fbxo7 F-box protein 7 JBrowse link NW_004936492 7,261,442 7,276,779 RGD:9068941
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link NW_004936495 5,770,988 5,816,157 RGD:9068941
G Htt huntingtin JBrowse link NW_004936477 20,443,101 20,577,167 RGD:9068941
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link NW_004936489 12,118,538 12,913,664 RGD:9068941
positive regulation of autophagy of mitochondrion in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp5if1 ATP synthase inhibitory factor subunit 1 JBrowse link NW_004936474 12,396,416 12,399,760 RGD:9068941
G Gba glucosylceramidase beta JBrowse link NW_004936580 4,715,869 4,720,752 RGD:9068941
G Hk2 hexokinase 2 JBrowse link NW_004936556 1,054,143 1,113,425 RGD:9068941
G Mul1 mitochondrial E3 ubiquitin protein ligase 1 JBrowse link NW_004936474 6,479,640 6,486,080 RGD:9068941
G Pink1 PTEN induced kinase 1 JBrowse link NW_004936474 6,574,471 6,589,478 RGD:9068941
positive regulation of chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Plk3 polo like kinase 3 JBrowse link NW_004936474 26,026,878 26,032,098 RGD:9068941
positive regulation of lipophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adrb2 adrenoceptor beta 2 JBrowse link NW_004936504 5,985,407 5,987,453 RGD:9068941
G Htt huntingtin JBrowse link NW_004936477 20,443,101 20,577,167 RGD:9068941
G Sesn2 sestrin 2 JBrowse link NW_004936474 12,416,652 12,436,799 RGD:9068941
G Sptlc1 serine palmitoyltransferase long chain base subunit 1 JBrowse link NW_004936796 886,946 948,254 RGD:9068941
G Sptlc2 serine palmitoyltransferase long chain base subunit 2 JBrowse link NW_004936488 6,313,189 6,404,425 RGD:9068941
positive regulation of macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bnip3 BCL2 interacting protein 3 JBrowse link NW_004936486 18,449,371 18,460,435 RGD:9068941
G Bnip3l BCL2 interacting protein 3 like JBrowse link NW_004936757 499,485 523,494 RGD:9068941
G C9orf72 C9orf72-SMCR8 complex subunit JBrowse link NW_004936611 2,074,655 2,101,846 RGD:9068941
G Dcn decorin JBrowse link NW_004936507 7,887,259 7,923,055 RGD:9068941
G Epm2a EPM2A glucan phosphatase, laforin JBrowse link NW_004936625 761,013 819,826 RGD:9068941
G Gnai3 G protein subunit alpha i3 JBrowse link NW_004936704 1,031,476 1,075,662 RGD:9068941
G Gpsm1 G protein signaling modulator 1 JBrowse link NW_004936669 1,442,550 1,469,563 RGD:9068941
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link NW_004936495 5,770,988 5,816,157 RGD:9068941
G Hmox1 heme oxygenase 1 JBrowse link NW_004936492 5,042,353 5,049,216 RGD:9068941
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma JBrowse link NW_004936809 1,280,254 1,306,964 RGD:9068941
G Il4 interleukin 4 JBrowse link NW_004936647 2,510,457 2,518,576 RGD:9068941
G Kdr kinase insert domain receptor JBrowse link NW_004936482 17,537,697 17,581,320 RGD:9068941
G Larp1 La ribonucleoprotein 1, translational regulator JBrowse link NW_004936515 8,039,887 8,125,006 RGD:9068941
G Map3k7 mitogen-activated protein kinase kinase kinase 7 JBrowse link NW_004936510 1,772,971 1,836,075 RGD:9068941
G Pafah1b2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 JBrowse link NW_004936542 2,390,904 2,417,596 RGD:9068941
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase JBrowse link NW_004936721 839,876 844,488 RGD:9068941
G Pink1 PTEN induced kinase 1 JBrowse link NW_004936474 6,574,471 6,589,478 RGD:9068941
G Rab12 RAB12, member RAS oncogene family JBrowse link NW_004936670 2,315,930 2,338,489 RGD:9068941
G Rufy4 RUN and FYVE domain containing 4 JBrowse link NW_004936569 654,904 676,012 RGD:9068941
G Scoc short coiled-coil protein JBrowse link NW_004936535 7,403,767 7,412,903 RGD:9068941
G Sesn2 sestrin 2 JBrowse link NW_004936474 12,416,652 12,436,799 RGD:9068941
G Sirt1 sirtuin 1 JBrowse link NW_004936521 10,296,097 10,316,673 RGD:9068941
G Sting1 stimulator of interferon response cGAMP interactor 1 JBrowse link NW_004936531 8,555,966 8,562,829 RGD:9068941
G Supt5h SPT5 homolog, DSIF elongation factor subunit JBrowse link NW_004936661 2,280,390 2,308,085 RGD:9068941
G Tbk1 TANK binding kinase 1 JBrowse link NW_004936545 2,763,755 2,809,229 RGD:9068941
G Trim13 tripartite motif containing 13 JBrowse link NW_004936565 2,976,681 2,989,036 RGD:9068941
G Tsc1 TSC complex subunit 1 JBrowse link NW_004936487 19,331,183 19,386,841 RGD:9068941
G Tsc2 TSC complex subunit 2 JBrowse link NW_004936694 1,958,152 1,993,373 RGD:9068941
G Wac WW domain containing adaptor with coiled-coil JBrowse link NW_004936613 2,793,706 2,862,984 RGD:9068941
positive regulation of mitophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link NW_004936489 12,118,538 12,913,664 RGD:9068941
G Vps13d vacuolar protein sorting 13 homolog D JBrowse link NW_004936474 955,081 1,194,200 RGD:9068941
positive regulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdc37 cell division cycle 37, HSP90 cochaperone JBrowse link NW_004936659 711,165 721,207 RGD:9068941
G Hdac6 histone deacetylase 6 JBrowse link NW_004936721 757,500 778,416 RGD:9068941
G Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 JBrowse link NW_004936751 478,978 622,818 RGD:9068941
G Pink1 PTEN induced kinase 1 JBrowse link NW_004936474 6,574,471 6,589,478 RGD:9068941
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link NW_004936489 12,118,538 12,913,664 RGD:9068941
G Tomm7 translocase of outer mitochondrial membrane 7 JBrowse link NW_004936478 30,787 36,952 RGD:9068941
positive regulation of xenophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC101956249 optineurin JBrowse link NW_004936862 488,591 516,819 RGD:9068941
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link NW_004936487 15,181,009 15,217,952 RGD:9068941
G Mapk3 mitogen-activated protein kinase 3 JBrowse link NW_004936501 12,342,670 12,390,650 RGD:9068941
G Nod1 nucleotide binding oligomerization domain containing 1 JBrowse link NW_004936478 6,717,354 6,768,293 RGD:9068941
G Nod2 nucleotide binding oligomerization domain containing 2 JBrowse link NW_004936475 3,708,069 3,742,845 RGD:9068941
G Ripk2 receptor interacting serine/threonine kinase 2 JBrowse link NW_004936544 3,606,925 3,653,248 RGD:9068941
G Tbk1 TANK binding kinase 1 JBrowse link NW_004936545 2,763,755 2,809,229 RGD:9068941
G Tlr2 toll like receptor 2 JBrowse link NW_004936576 522,234 531,660 RGD:9068941
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg16l1 autophagy related 16 like 1 JBrowse link NW_004936525 3,973,574 4,010,442 RGD:9068941
G Atg5 autophagy related 5 JBrowse link NW_004936564 2,759,085 2,885,394 RGD:9068941
G Irgm immunity related GTPase M JBrowse link NW_004936504 4,055,091 4,056,089 RGD:9068941
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link NW_004936765 909,118 946,788 RGD:9068941
protein localization to phagophore assembly site term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg16l1 autophagy related 16 like 1 JBrowse link NW_004936525 3,973,574 4,010,442 RGD:9068941
G Mfn2 mitofusin 2 JBrowse link NW_004936474 767,754 795,258 RGD:9068941
G Pacs2 phosphofurin acidic cluster sorting protein 2 JBrowse link NW_004936621 172,727 206,803 RGD:9068941
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link NW_004936517 4,009,938 4,145,518 RGD:9068941
G Stx17 syntaxin 17 JBrowse link NW_004936524 8,324,562 8,381,244 RGD:9068941
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link NW_004936765 909,118 946,788 RGD:9068941
protein targeting to lysosome involved in chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link NW_004936542 7,577,192 7,581,598 RGD:9068941
G Lamp2 lysosomal associated membrane protein 2 JBrowse link NW_004936479 9,584,221 9,622,330 RGD:9068941
protein targeting to vacuole involved in autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link NW_004936750 1,381,864 1,406,736 RGD:9068941
regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C9orf72 C9orf72-SMCR8 complex subunit JBrowse link NW_004936611 2,074,655 2,101,846 RGD:9068941
G Ift20 intraflagellar transport 20 JBrowse link NW_004936538 4,484,484 4,491,688 RGD:9068941
G Ift88 intraflagellar transport 88 JBrowse link NW_004936720 1,041,216 1,168,725 RGD:9068941
G Mtmr3 myotubularin related protein 3 JBrowse link NW_004936657 3,792,043 3,891,113 RGD:9068941
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing JBrowse link NW_004936950 242,071 323,204 RGD:9068941
G Rab1b RAB1B, member RAS oncogene family JBrowse link NW_004936599 3,317,258 3,324,208 RGD:9068941
G Rnf5 ring finger protein 5 JBrowse link NW_004936727 1,422,207 1,424,808 RGD:9068941
G Tbc1d14 TBC1 domain family member 14 JBrowse link NW_004936477 18,761,034 18,864,578 RGD:9068941
G Ubqln2 ubiquilin 2 JBrowse link NW_004936819 530,833 534,185 RGD:9068941
regulation of autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link NW_004936501 11,955,334 11,967,338 RGD:9068941
G Tbc1d25 TBC1 domain family member 25 JBrowse link NW_004936721 524,398 536,918 RGD:9068941
regulation of autophagosome size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp13a2 ATPase cation transporting 13A2 JBrowse link NW_004936474 3,968,216 3,980,821 RGD:9068941
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link NW_004936501 11,955,334 11,967,338 RGD:9068941
regulation of autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acer2 alkaline ceramidase 2 JBrowse link NW_004936652 1,289,445 1,329,236 RGD:9068941
G Atm ATM serine/threonine kinase JBrowse link NW_004936551 359,134 534,672 RGD:9068941
G Bcl2 BCL2 apoptosis regulator JBrowse link NW_004936497 2,209,136 2,373,580 RGD:9068941
G Bok BCL2 family apoptosis regulator BOK JBrowse link NW_004936745 344,837 350,950 RGD:9068941
G C9orf72 C9orf72-SMCR8 complex subunit JBrowse link NW_004936611 2,074,655 2,101,846 RGD:9068941
G Chmp4b charged multivesicular body protein 4B JBrowse link NW_004936561 6,756,360 6,798,964 RGD:9068941
G Cisd2 CDGSH iron sulfur domain 2 JBrowse link NW_004936520 514,747 527,576 RGD:9068941
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link NW_004936501 11,955,334 11,967,338 RGD:9068941
G Ddit3 DNA damage inducible transcript 3 JBrowse link NW_004936646 1,665,019 1,669,212 RGD:9068941
G Depp1 DEPP1 autophagy regulator JBrowse link NW_004936617 4,740,073 4,743,610 RGD:9068941
G Dram1 DNA damage regulated autophagy modulator 1 JBrowse link NW_004936492 12,171,642 12,206,845 RGD:9068941
G Dram2 DNA damage regulated autophagy modulator 2 JBrowse link NW_004936704 2,488,370 2,513,042 RGD:9068941
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit JBrowse link NW_004936501 2,301,072 2,329,346 RGD:9068941
G Fbxl2 F-box and leucine rich repeat protein 2 JBrowse link NW_004936473 23,567,251 23,659,708 RGD:9068941
G Gpr137b G protein-coupled receptor 137B JBrowse link NW_004936484 16,539,076 16,578,606 RGD:9068941
G Kat8 lysine acetyltransferase 8 JBrowse link NW_004936501 13,475,676 13,487,617 RGD:9068941
G Keap1 kelch like ECH associated protein 1 JBrowse link NW_004936659 785,059 793,775 RGD:9068941
G Lamp3 lysosomal associated membrane protein 3 JBrowse link NW_004936566 365,326 394,985 RGD:9068941
G Lmx1b LIM homeobox transcription factor 1 beta JBrowse link NW_004936487 14,513,303 14,587,771 RGD:9068941
G Lrrk2 leucine rich repeat kinase 2 JBrowse link NW_004936607 628,469 761,117 RGD:9068941
G Mapk15 mitogen-activated protein kinase 15 JBrowse link NW_004936470 8,420,850 8,425,996 RGD:9068941
G Mapt microtubule associated protein tau JBrowse link NW_004936541 2,381,411 2,479,984 RGD:9068941
G Mfsd8 major facilitator superfamily domain containing 8 JBrowse link NW_004936642 2,745,889 2,833,286 RGD:9068941
G Mtor mechanistic target of rapamycin kinase JBrowse link NW_004936474 158,376 282,310 RGD:9068941
G Nlrp6 NLR family pyrin domain containing 6 JBrowse link NW_004936888 145,642 151,716 RGD:9068941
G Nupr1 nuclear protein 1, transcriptional regulator JBrowse link NW_004936501 11,998,064 11,999,431 RGD:9068941
G Pik3r2 phosphoinositide-3-kinase regulatory subunit 2 JBrowse link NW_004936596 3,010,526 3,021,848 RGD:9068941
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha JBrowse link NW_004936520 5,383,737 5,540,176 RGD:9068941
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta JBrowse link NW_004936490 14,168,951 14,201,712 RGD:9068941
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma JBrowse link NW_004936646 1,737,088 1,748,056 RGD:9068941
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link NW_004936489 12,118,538 12,913,664 RGD:9068941
G Pycard PYD and CARD domain containing JBrowse link NW_004936501 13,550,702 13,552,774 RGD:9068941
G Rab39b RAB39B, member RAS oncogene family JBrowse link NW_004936927 492,114 498,030 RGD:9068941
G Rab8a RAB8A, member RAS oncogene family JBrowse link NW_004936596 4,385,788 4,403,393 RGD:9068941
G Rmc1 regulator of MON1-CCZ1 JBrowse link NW_004936550 2,962,667 2,983,451 RGD:9068941
G Smcr8 SMCR8-C9orf72 complex subunit JBrowse link NW_004936741 1,838,974 1,848,742 RGD:9068941
G Soga1 suppressor of glucose, autophagy associated 1 JBrowse link NW_004936561 4,249,878 4,315,108 RGD:9068941
G Tpcn2 two pore segment channel 2 JBrowse link NW_004936599 1,301,937 1,343,046 RGD:9068941
G Trib3 tribbles pseudokinase 3 JBrowse link NW_004936485 18,077,850 18,082,817 RGD:9068941
G Usp10 ubiquitin specific peptidase 10 JBrowse link NW_004936641 3,308,121 3,350,476 RGD:9068941
G Usp13 ubiquitin specific peptidase 13 JBrowse link NW_004936566 3,416,468 3,522,127 RGD:9068941
G Usp33 ubiquitin specific peptidase 33 JBrowse link NW_004936571 4,537,461 4,600,238 RGD:9068941
G Vps29 VPS29 retromer complex component JBrowse link NW_004936558 3,449,993 3,459,008 RGD:9068941
G Wdr24 WD repeat domain 24 JBrowse link NW_004936501 321,877 326,984 RGD:9068941
G Wdr41 WD repeat domain 41 JBrowse link NW_004936549 5,453,824 5,494,809 RGD:9068941
G Xbp1 X-box binding protein 1 JBrowse link NW_004936657 2,891,171 2,895,409 RGD:9068941
G Xpa XPA, DNA damage recognition and repair factor JBrowse link NW_004936524 6,467,365 6,493,556 RGD:9068941
G Zmpste24 zinc metallopeptidase STE24 JBrowse link NW_004936474 22,035,059 22,077,846 RGD:9068941
regulation of autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bnip3l BCL2 interacting protein 3 like JBrowse link NW_004936757 499,485 523,494 RGD:9068941
G Csnk2a2 casein kinase 2 alpha 2 JBrowse link NW_004936475 10,030,408 10,073,576 RGD:9068941
G Cttn cortactin JBrowse link NW_004936599 481,234 503,857 RGD:9068941
G Dnm1l dynamin 1 like JBrowse link NW_004936607 3,576,357 3,632,423 RGD:9068941
G Fbxw7 F-box and WD repeat domain containing 7 JBrowse link NW_004936689 2,261,163 2,449,951 RGD:9068941
G Fzd5 frizzled class receptor 5 JBrowse link NW_004936631 3,909,046 3,915,939 RGD:9068941
G Gsk3a glycogen synthase kinase 3 alpha JBrowse link NW_004936706 266,462 277,256 RGD:9068941
G Parl presenilin associated rhomboid like JBrowse link NW_004936578 5,945,765 5,992,972 RGD:9068941
G Srebf1 sterol regulatory element binding transcription factor 1 JBrowse link NW_004936741 1,408,669 1,419,717 RGD:9068941
G Srebf2 sterol regulatory element binding transcription factor 2 JBrowse link NW_004936492 115,923 174,614 RGD:9068941
G Usp36 ubiquitin specific peptidase 36 JBrowse link NW_004936594 3,194,842 3,228,701 RGD:9068941
G Vdac1 voltage dependent anion channel 1 JBrowse link NW_004936647 1,220,075 1,249,579 RGD:9068941
regulation of chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gfap glial fibrillary acidic protein JBrowse link NW_004936541 1,265,915 1,275,232 RGD:9068941
regulation of macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp13a2 ATPase cation transporting 13A2 JBrowse link NW_004936474 3,968,216 3,980,821 RGD:9068941
G Atp6v0a1 ATPase H+ transporting V0 subunit a1 JBrowse link NW_004936490 17,235,661 17,296,589 RGD:9068941
G Hdac6 histone deacetylase 6 JBrowse link NW_004936721 757,500 778,416 RGD:9068941
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link NW_004936522 4,872,360 4,939,873 RGD:9068941
G Ubqln2 ubiquilin 2 JBrowse link NW_004936819 530,833 534,185 RGD:9068941
reticulophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddrgk1 DDRGK domain containing 1 JBrowse link NW_004936485 15,516,348 15,526,380 RGD:9068941
G Retreg1 reticulophagy regulator 1 JBrowse link NW_004936480 19,114,753 19,253,346 RGD:9068941
G Sting1 stimulator of interferon response cGAMP interactor 1 JBrowse link NW_004936531 8,555,966 8,562,829 RGD:9068941
G Tex264 testis expressed 264, ER-phagy receptor JBrowse link NW_004936529 3,008,355 3,039,537 RGD:9068941
G Uba5 ubiquitin like modifier activating enzyme 5 JBrowse link NW_004936529 5,997,459 6,010,776 RGD:9068941
G Ufc1 ubiquitin-fold modifier conjugating enzyme 1 JBrowse link NW_004936903 449,042 462,727 RGD:9068941
G Ufl1 UFM1 specific ligase 1 JBrowse link NW_004936699 1,131,385 1,163,310 RGD:9068941
G Ufm1 ubiquitin fold modifier 1 JBrowse link NW_004937057 143,001 153,873 RGD:9068941
selective autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sqstm1 sequestosome 1 JBrowse link NW_004936739 943,080 955,296 RGD:9068941
substrate localization to autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link NW_004936750 1,381,864 1,406,736 RGD:9068941
suppression by virus of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg7 autophagy related 7 JBrowse link NW_004936602 1,938,720 2,179,239 RGD:9068941
xenophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg16l1 autophagy related 16 like 1 JBrowse link NW_004936525 3,973,574 4,010,442 RGD:9068941
G Calcoco2 calcium binding and coiled-coil domain 2 JBrowse link NW_004936490 12,576,752 12,609,273 RGD:9068941
G Lgals8 galectin 8 JBrowse link NW_004936484 16,357,433 16,374,675 RGD:9068941
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link NW_004936765 909,118 946,788 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11930
    cellular process 11112
      process utilizing autophagic mechanism 350
        autophagy + 350
        cytoplasm to vacuole transport by the Cvt pathway + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.