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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of mitochondrial gene expression
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Accession:GO:0062125 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of mitochondrial gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA).


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negative regulation of mitochondrial translation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Malsu1 mitochondrial assembly of ribosomal large subunit 1 ISO (PMID:22829778) RGD PMID:22829778 NCBI chr 4:78,735,279...78,744,102
Ensembl chr 4:78,735,279...78,744,102
JBrowse link
positive regulation of mitochondrial transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chchd10 coiled-coil-helix-coiled-coil-helix domain containing 10 ISO (MGI:MGI:5920587|PMID:28585542) RGD PMID:28585542 MGI:MGI:5920587 NCBI chr20:13,665,046...13,666,845
Ensembl chr20:13,665,031...13,667,333
JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 ISO (MGI:MGI:6120139|PMID:23283301) RGD PMID:23283301 MGI:MGI:6120139 NCBI chr 2:54,857,688...54,893,404
Ensembl chr 2:54,857,688...54,893,404
JBrowse link
G Sirt3 sirtuin 3 ISO (MGI:MGI:6120139|PMID:23283301) RGD PMID:23283301 MGI:MGI:6120139 NCBI chr 1:213,613,502...213,636,061
Ensembl chr 1:213,613,513...213,635,546
JBrowse link
positive regulation of mitochondrial translation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1qbp complement C1q binding protein ISO
IBA
ISS
(MGI:MGI:5487496|PMID:22904065)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:22904065, PMID:21873635 GO_REF:0000024, MGI:MGI:5487496, RGD:13792537 NCBI chr10:57,613,876...57,618,527
Ensembl chr10:57,613,879...57,618,527
JBrowse link
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 ISO MGI:MGI:5750452 (MGI:MGI:5635958|PMID:25738458) RGD PMID:25738458 MGI:MGI:5635958 NCBI chr 3:149,835,953...149,870,429
Ensembl chr 3:149,703,848...149,870,413
JBrowse link
G Coa3 cytochrome C oxidase assembly factor 3 ISO (PMID:23260140) RGD PMID:23260140 NCBI chr10:89,198,750...89,199,731
Ensembl chr10:89,198,749...89,199,736
JBrowse link
G Fastkd2 FAST kinase domains 2 ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:27667664)
UniProt
Ensembl
RGD
PMID:27667664 GO_REF:0000024, GO_REF:0000107 NCBI chr 9:70,448,386...70,471,420
Ensembl chr 9:70,450,444...70,470,550
JBrowse link
G Fastkd3 FAST kinase domains 3 ISO
ISS
(PMID:27789713)
GO_REF:0000024
RGD
UniProt
PMID:27789713 GO_REF:0000024 NCBI chr 1:37,734,400...37,742,932
Ensembl chr 1:37,734,403...37,742,932
JBrowse link
G Mief1 mitochondrial elongation factor 1 ISO (PMID:30215512) RGD PMID:30215512 NCBI chr 7:121,462,962...121,478,545
Ensembl chr 7:121,462,966...121,478,546
JBrowse link
G Mpv17l2 MPV17 mitochondrial inner membrane protein like 2 ISO (PMID:24948607) RGD PMID:24948607 NCBI chr16:20,432,734...20,435,125
Ensembl chr16:20,432,899...20,435,974
JBrowse link
G Mrps27 mitochondrial ribosomal protein S27 ISO (PMID:22841715) RGD PMID:22841715 NCBI chr 2:29,598,344...29,666,711
Ensembl chr 2:29,598,344...29,666,724
JBrowse link
G Ngrn neugrin, neurite outgrowth associated ISS
ISO
GO_REF:0000024
(PMID:27667664)
UniProt
RGD
PMID:27667664 GO_REF:0000024 NCBI chr 1:142,050,458...142,056,336
Ensembl chr 1:142,050,458...142,056,336
JBrowse link
G Nsun4 NOP2/Sun RNA methyltransferase 4 ISO (MGI:MGI:5573024|PMID:24516400) RGD PMID:24516400 MGI:MGI:5573024 NCBI chr 5:134,885,377...134,905,492
Ensembl chr 5:134,886,497...134,905,588
JBrowse link
G Rcc1l RCC1 like ISO (PMID:27667664) RGD PMID:27667664 NCBI chr12:25,561,871...25,592,337
Ensembl chr12:25,561,777...25,592,342
JBrowse link
G Rmnd1 required for meiotic nuclear division 1 homolog ISO
IBA
(PMID:25604853)
PMID:21873635
RGD PMID:25604853, PMID:21873635 RGD:13792537 NCBI chr 1:40,948,843...40,982,669
Ensembl chr 1:40,948,847...40,972,826
JBrowse link
G Rpusd3 RNA pseudouridine synthase D3 ISO (PMID:27667664) RGD PMID:27667664 NCBI chr 4:145,361,937...145,370,992
Ensembl chr 4:145,366,765...145,370,992
JBrowse link
G Rpusd4 RNA pseudouridine synthase D4 ISS
ISO
GO_REF:0000024
(PMID:27667664)
UniProt
RGD
PMID:27667664 GO_REF:0000024 NCBI chr 8:36,467,706...36,477,190
Ensembl chr 8:36,467,706...36,477,189
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit ISO
ISS
(PMID:27132592)
GO_REF:0000024
RGD
UniProt
PMID:27132592 GO_REF:0000024 NCBI chr11:47,047,342...47,052,420
Ensembl chr11:47,047,342...47,052,418
JBrowse link
G Trub2 TruB pseudouridine synthase family member 2 ISS
ISO
GO_REF:0000024
(PMID:27667664)
UniProt
RGD
PMID:27667664 GO_REF:0000024 NCBI chr 3:8,338,479...8,348,746
Ensembl chr 3:8,338,484...8,348,746
JBrowse link
G Uqcc1 ubiquinol-cytochrome c reductase complex assembly factor 1 ISO
IBA
(PMID:24385928)
PMID:21873635
RGD PMID:24385928, PMID:21873635 RGD:13792537 NCBI chr 3:151,384,965...151,474,112
Ensembl chr 3:151,384,954...151,474,135
JBrowse link
G Uqcc2 ubiquinol-cytochrome c reductase complex assembly factor 2 ISO
ISS
(PMID:24385928)
GO_REF:0000024
RGD
UniProt
PMID:24385928 GO_REF:0000024 NCBI chr20:5,712,200...5,723,902
Ensembl chr20:5,712,203...5,723,902
JBrowse link
regulation of mitochondrial transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl4 methyltransferase like 4 ISO
IEA
(PMID:32183942)
GO_REF:0000107
RGD
Ensembl
PMID:32183942 GO_REF:0000107 NCBI chr 9:119,871,519...119,953,248
Ensembl chr 9:119,873,170...119,897,268
JBrowse link
G Mtres1 mitochondrial transcription rescue factor 1 ISO
IBA
(PMID:31226201)
PMID:21873635
RGD PMID:31226201, PMID:21873635 RGD:13792537 NCBI chr20:48,276,101...48,294,975
Ensembl chr20:48,275,762...48,294,948
JBrowse link
regulation of mitochondrial translation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase ISO (PMID:27497299) RGD PMID:27497299 NCBI chr 6:111,456,096...111,476,829
Ensembl chr 6:111,456,187...111,477,090
JBrowse link
G Lrpprc leucine-rich pentatricopeptide repeat containing ISO MGI:MGI:5438913 (MGI:MGI:5438202|PMID:22045337) RGD PMID:22045337 MGI:MGI:5438202 NCBI chr 6:7,984,043...8,066,874
Ensembl chr 6:7,984,019...8,066,868
JBrowse link
G Mtg1 mitochondrial ribosome-associated GTPase 1 ISO (PMID:23396448) RGD PMID:23396448 NCBI chr 1:212,606,753...212,619,493
Ensembl chr 1:212,606,777...212,619,493
JBrowse link
G Mtg2 mitochondrial ribosome-associated GTPase 2 ISO (PMID:23396448) RGD PMID:23396448 NCBI chr 3:175,448,214...175,464,109
Ensembl chr 3:175,450,979...175,464,117
JBrowse link
G Nsun3 NOP2/Sun RNA methyltransferase 3 ISO (PMID:27356879), (PMID:27497299) RGD PMID:27356879, PMID:27497299 NCBI chr11:38,535,971...38,590,274
Ensembl chr11:38,536,165...38,590,107
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 ISO (PMID:29364879), (PMID:29452640)
(MGI:MGI:6148506|PMID:29323231), (MGI:MGI:6148666|PMID:29452640)
RGD PMID:29323231, PMID:29364879, PMID:29452640 MGI:MGI:6148506, MGI:MGI:6148666 NCBI chr 7:70,824,718...70,829,822
Ensembl chr 7:70,824,715...70,829,815
JBrowse link
G Taco1 translational activator of cytochrome c oxidase I IEA
ISO
GO_REF:0000107
MGI:MGI:5905291 (MGI:MGI:5881987|PMID:27319982)
Ensembl
RGD
PMID:27319982 GO_REF:0000107, MGI:MGI:5881987 NCBI chr10:94,260,148...94,268,276
Ensembl chr10:94,260,197...94,268,222
JBrowse link
G Tsfm Ts translation elongation factor, mitochondrial ISO
IEA
ISS
(PMID:27677415)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:27677415 GO_REF:0000024, GO_REF:0000107 NCBI chr 7:70,311,948...70,319,389
Ensembl chr 7:70,311,950...70,319,346
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    regulation of biological process 13071
      regulation of metabolic process 7007
        regulation of macromolecule metabolic process 6492
          regulation of gene expression 4799
            regulation of mitochondrial gene expression 32
              regulation of mitochondrial transcription + 5
              regulation of mitochondrial translation + 27
Path 2
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      organic substance metabolic process 11636
        macromolecule metabolic process 10081
          regulation of macromolecule metabolic process 6492
            regulation of gene expression 4799
              regulation of mitochondrial gene expression 32
                regulation of mitochondrial transcription + 5
                regulation of mitochondrial translation + 27
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.