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ONTOLOGY REPORT - ANNOTATIONS


Term:protein-DNA complex assembly
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Accession:GO:0065004 term browser browse the term
Definition:The aggregation, arrangement and bonding together of proteins and DNA molecules to form a protein-DNA complex.


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protein-DNA complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EP300 E1A binding protein p300 ISO p53, CBP, p21/WAF1 promoter RGD PMID:9215639 RGD:2312285 NCBI chr22:21,986,467...22,076,921
Ensembl chr22:40,079,503...40,168,604
JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 ISO (MGI:MGI:1354027|PMID:10692439), (MGI:MGI:3624193|PMID:16603706) MGI PMID:10692439, PMID:16603706 MGI:MGI:1354027, MGI:MGI:3624193 NCBI chr 6:123,527,180...123,538,794
Ensembl chr 6:127,647,547...127,659,056
JBrowse link
G HNF1B HNF1 homeobox B ISO RGD PMID:9545279 RGD:2312721 NCBI chr17:19,333,485...19,392,147
Ensembl chr17:19,633,424...19,691,863
JBrowse link
G PIAS1 protein inhibitor of activated STAT 1 ISO RGD PMID:16135793 RGD:2303115 NCBI chr15:47,006,718...47,141,035
Ensembl chr15:65,276,530...65,410,105
JBrowse link
G TCF4 transcription factor 4 ISO (MGI:MGI:85411|PMID:8978694) BHF-UCL PMID:8978694 MGI:MGI:85411 NCBI chr18:48,603,069...48,969,010
Ensembl chr18:51,938,357...52,352,030
JBrowse link
CENP-A containing nucleosome assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HJURP Holliday junction recognition protein ISO (PMID:19410544), (PMID:19410545) UniProtKB PMID:19410544, PMID:19410545 NCBI chr2B:121,076,314...121,096,783
Ensembl chr2B:239,950,984...239,967,955
JBrowse link
G MIS18A MIS18 kinetochore protein A ISO (MGI:MGI:5438906|PMID:22516971) MGI PMID:22516971 MGI:MGI:5438906 NCBI chr21:18,635,735...18,646,611
Ensembl chr21:32,016,547...32,027,430
JBrowse link
centromere complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPV centromere protein V ISO (PMID:18772885) UniProtKB PMID:18772885 NCBI chr17:35,247,664...35,258,656 JBrowse link
DNA recombinase assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD51 RAD51 recombinase ISO (PMID:26681308) UniProtKB PMID:26681308 NCBI chr15:19,638,310...19,672,474
Ensembl chr15:37,891,056...37,925,207
JBrowse link
DNA replication preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDT1 chromatin licensing and DNA replication factor 1 ISO (PMID:11125146) CAFA PMID:11125146 NCBI chr16:69,516,728...69,522,419
Ensembl chr16:89,174,071...89,177,823
JBrowse link
G GMNN geminin DNA replication inhibitor ISO (PMID:11125146) CAFA PMID:11125146 NCBI chr 6:24,612,864...24,624,010
Ensembl chr 6:24,944,377...24,955,575
JBrowse link
DNA replication-dependent nucleosome assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASF1A anti-silencing function 1A histone chaperone ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:116,702,314...116,717,445
Ensembl chr 6:120,843,461...120,858,471
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr19:13,685,617...13,702,367
Ensembl chr19:14,411,127...14,428,917
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr19:3,425,182...3,461,646
Ensembl chr19:4,375,379...4,409,339
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr21:22,755,721...22,786,958
Ensembl chr21:36,113,971...36,143,575
JBrowse link
G HAT1 histone acetyltransferase 1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr2B:59,211,555...59,281,203
Ensembl chr2B:176,670,029...176,739,120
JBrowse link
G IPO4 importin 4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr14:4,956,456...4,965,305
Ensembl chr14:23,079,910...23,088,610
JBrowse link
G LOC100981824 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:26,971,978...26,975,626 JBrowse link
G LOC100985978 histone H3.1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:27,642,894...27,644,248 JBrowse link
G LOC100991861 histone H3.1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:25,865,046...25,865,544 JBrowse link
G LOC100992212 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:25,858,656...25,860,724 JBrowse link
G LOC112440133 histone H2A type 1-H ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:26,032,198...26,034,578
Ensembl chr 6:26,694,469...26,694,861
JBrowse link
G LOC112440134 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:26,022,725...26,024,812 JBrowse link
G LOC117974259 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr12:14,776,653...14,777,244 JBrowse link
G LOC117975185 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 1:125,196,600...125,205,588 JBrowse link
G NASP nuclear autoantigenic sperm protein ISO (PMID:14718166)
(MGI:MGI:3694318|PMID:16728391)
UniProtKB
UniProt
PMID:14718166, PMID:16728391 MGI:MGI:3694318 NCBI chr 1:44,885,433...44,920,159
Ensembl chr 1:46,242,841...46,278,737
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 1:31,944,257...31,974,763
Ensembl chr 1:33,111,234...33,140,518
JBrowse link
DNA replication-independent nucleosome assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASF1A anti-silencing function 1A histone chaperone ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:116,702,314...116,717,445
Ensembl chr 6:120,843,461...120,858,471
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr19:13,685,617...13,702,367
Ensembl chr19:14,411,127...14,428,917
JBrowse link
G ATRX ATRX chromatin remodeler ISO (PMID:22391447) UniProtKB PMID:22391447 NCBI chr  X:66,682,968...66,969,421
Ensembl chr  X:76,795,574...77,083,486
JBrowse link
G CABIN1 calcineurin binding protein 1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr22:4,816,411...4,984,760
Ensembl chr22:22,927,572...23,070,165
JBrowse link
G HAT1 histone acetyltransferase 1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr2B:59,211,555...59,281,203
Ensembl chr2B:176,670,029...176,739,120
JBrowse link
G IPO4 importin 4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr14:4,956,456...4,965,305
Ensembl chr14:23,079,910...23,088,610
JBrowse link
G LOC100970414 histone H3.3A ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447
JBrowse link
G LOC100977781 protein HIRA ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr22:2,087,846...2,191,192
Ensembl chr22:17,765,598...17,847,084
JBrowse link
G LOC100981824 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:26,971,978...26,975,626 JBrowse link
G LOC100988671 histone H3.3A ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106
JBrowse link
G LOC100992212 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:25,858,656...25,860,724 JBrowse link
G LOC112440134 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:26,022,725...26,024,812 JBrowse link
G LOC117974259 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr12:14,776,653...14,777,244 JBrowse link
G LOC117975185 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 1:125,196,600...125,205,588 JBrowse link
G NASP nuclear autoantigenic sperm protein ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 1:44,885,433...44,920,159
Ensembl chr 1:46,242,841...46,278,737
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 1:31,944,257...31,974,763
Ensembl chr 1:33,111,234...33,140,518
JBrowse link
G UBN1 ubinuclein 1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr16:3,771,623...3,806,575
Ensembl chr16:4,942,191...4,970,986
JBrowse link
kinetochore assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPA centromere protein A ISO (PMID:11682612) BHF-UCL PMID:11682612 NCBI chr2A:26,785,301...26,800,178 JBrowse link
G CENPC centromere protein C ISO (PMID:21529714) UniProtKB PMID:21529714 NCBI chr 4:56,503,353...56,615,246
Ensembl chr 4:62,895,561...62,968,383
JBrowse link
G CENPE centromere protein E ISO (PMID:9763420) UniProt PMID:9763420 NCBI chr 4:95,562,005...95,654,397
Ensembl chr 4:106,185,283...106,277,229
JBrowse link
G CENPT centromere protein T ISO (PMID:21529714) UniProtKB PMID:21529714 NCBI chr16:48,169,892...48,177,559
Ensembl chr16:67,557,661...67,564,735
JBrowse link
G CENPW centromere protein W ISO (PMID:21695110) UniProtKB PMID:21695110 NCBI chr 6:124,125,492...124,272,450
Ensembl chr 6:128,242,724...128,251,528
JBrowse link
G MIS12 MIS12 kinetochore complex component ISO (PMID:16585270) UniProtKB PMID:16585270 NCBI chr17:5,534,305...5,538,736
Ensembl chr17:5,529,017...5,529,634
JBrowse link
G POGZ pogo transposable element derived with ZNF domain ISO (PMID:20562864) UniProtKB PMID:20562864 NCBI chr 1:126,761,777...126,818,262
Ensembl chr 1:130,407,426...130,463,909
JBrowse link
late meiotic recombination nodule assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCMDC2 minichromosome maintenance domain containing 2 ISO (MGI:MGI:5805564|PMID:27760146) MGI PMID:27760146 MGI:MGI:5805564 NCBI chr 8:63,412,462...63,465,258 JBrowse link
meiotic recombination nodule assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCMDC2 minichromosome maintenance domain containing 2 ISO (MGI:MGI:5805564|PMID:27760146) MGI PMID:27760146 MGI:MGI:5805564 NCBI chr 8:63,412,462...63,465,258 JBrowse link
negative regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGB1 high mobility group box 1 ISO (PMID:8006019) UniProtKB PMID:8006019 NCBI chr13:11,737,942...11,894,923 JBrowse link
G THRA thyroid hormone receptor alpha ISO (PMID:8524305) UniProtKB PMID:8524305 NCBI chr17:17,196,459...17,226,263 JBrowse link
nucleosome assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANP32B acidic nuclear phosphoprotein 32 family member B ISO (PMID:20538007) UniProtKB PMID:20538007 NCBI chr 9:69,075,972...69,108,178 JBrowse link
G ASF1A anti-silencing function 1A histone chaperone ISO (PMID:11897662) MGI PMID:11897662 NCBI chr 6:116,702,314...116,717,445
Ensembl chr 6:120,843,461...120,858,471
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone ISO (MGI:MGI:2675150|PMID:12842904) MGI PMID:12842904 MGI:MGI:2675150 NCBI chr19:13,685,617...13,702,367
Ensembl chr19:14,411,127...14,428,917
JBrowse link
G ATRX ATRX chromatin remodeler ISO (PMID:20651253) UniProtKB PMID:20651253 NCBI chr  X:66,682,968...66,969,421
Ensembl chr  X:76,795,574...77,083,486
JBrowse link
G BRD2 bromodomain containing 2 ISO (PMID:18406326) UniProtKB PMID:18406326 NCBI chr 6:32,538,130...32,550,823
Ensembl chr 6:33,657,648...33,666,031
JBrowse link
G DAXX death domain associated protein ISO (PMID:20504901), (PMID:20651253)
(MGI:MGI:5567907|PMID:20651253)
UniProtKB PMID:20504901, PMID:20651253 MGI:MGI:5567907 NCBI chr 6:32,890,846...32,895,307
Ensembl chr 6:34,004,543...34,008,717
JBrowse link
G GRWD1 glutamate rich WD repeat containing 1 ISO (PMID:25990725)
(PMID:27552915)
UniProtKB PMID:25990725, PMID:27552915 NCBI chr19:45,447,004...45,455,976 JBrowse link
G HMGB1 high mobility group box 1 ISO (PMID:2465778) AgBase PMID:2465778 NCBI chr13:11,737,942...11,894,923 JBrowse link
G HMGB2 high mobility group box 2 ISO (PMID:2465778) AgBase PMID:2465778 NCBI chr 4:165,559,848...165,562,625
Ensembl chr 4:177,797,457...177,800,952
JBrowse link
G LOC100970414 histone H3.3A ISO (PMID:25615412)
(PMID:21636898)
UniProtKB PMID:21636898, PMID:25615412 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447
JBrowse link
G LOC100974795 histone H3.1t ISO (PMID:25615412)
(PMID:20498094)
UniProtKB PMID:20498094, PMID:25615412 NCBI chr 1:203,826,506...203,827,872
Ensembl chr 1:209,038,009...209,038,419
JBrowse link
G LOC100979289 histone H2B type 1-A ISO (MGI:MGI:3702345|PMID:17261847)
(PMID:24699735)
(MGI:MGI:5502464|PMID:23884607)
MGI
UniProtKB
PMID:17261847, PMID:23884607, PMID:24699735 MGI:MGI:3702345, MGI:MGI:5502464 NCBI chr 6:25,561,518...25,562,817
Ensembl chr 6:25,887,397...25,887,780
JBrowse link
G LOC100981824 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 6:26,971,978...26,975,626 JBrowse link
G LOC100985978 histone H3.1 ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 6:27,642,894...27,644,248 JBrowse link
G LOC100988671 histone H3.3A ISO (PMID:25615412)
(PMID:21636898)
UniProtKB PMID:21636898, PMID:25615412 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106
JBrowse link
G LOC100991861 histone H3.1 ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 6:25,865,046...25,865,544 JBrowse link
G LOC100992212 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 6:25,858,656...25,860,724 JBrowse link
G LOC100992822 histone H2A-Bbd type 2/3 ISO (PMID:22795134) UniProtKB PMID:22795134 NCBI chr  X:144,364,612...144,365,333 JBrowse link
G LOC112440133 histone H2A type 1-H ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 6:26,032,198...26,034,578
Ensembl chr 6:26,694,469...26,694,861
JBrowse link
G LOC112440134 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 6:26,022,725...26,024,812 JBrowse link
G LOC117974259 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr12:14,776,653...14,777,244 JBrowse link
G LOC117975185 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 1:125,196,600...125,205,588 JBrowse link
G LOC117977735 histone H2A-Bbd type 2/3 ISO (PMID:22795134) UniProtKB PMID:22795134 NCBI chr  X:144,849,954...144,850,606 JBrowse link
G LOC117980349 histone H3 ISO (PMID:21636898), (PMID:25615412) UniProtKB PMID:21636898, PMID:25615412 NCBI chr 1:125,196,255...125,197,305 JBrowse link
G MCM2 minichromosome maintenance complex component 2 ISO (MGI:MGI:2156014|PMID:10531422) MGI PMID:10531422 MGI:MGI:2156014 NCBI chr 3:124,643,362...124,667,121
Ensembl chr 3:131,950,887...131,974,641
JBrowse link
G NAA60 N-alpha-acetyltransferase 60, NatF catalytic subunit ISO (PMID:21981917) UniProtKB PMID:21981917 NCBI chr16:2,366,988...2,409,598
Ensembl chr16:3,543,418...3,586,299
JBrowse link
G NAP1L4 nucleosome assembly protein 1 like 4 ISO (MGI:MGI:5897488|PMID:28366643)
(PMID:9325046)
UniProtKB PMID:9325046, PMID:28366643 MGI:MGI:5897488 NCBI chr11:2,970,001...3,018,239
Ensembl chr11:2,997,726...3,044,848
JBrowse link
G NASP nuclear autoantigenic sperm protein ISO (PMID:25615412) UniProtKB PMID:25615412 NCBI chr 1:44,885,433...44,920,159
Ensembl chr 1:46,242,841...46,278,737
JBrowse link
G NPM1 nucleophosmin 1 ISO (PMID:11602260) UniProtKB PMID:11602260 NCBI chr 5:166,735,904...166,756,321
Ensembl chr 5:173,490,197...173,510,656
JBrowse link
G PADI4 peptidyl arginine deiminase 4 ISO (MGI:MGI:5545819|PMID:24463520) UniProtKB PMID:24463520 MGI:MGI:5545819 NCBI chr 1:16,255,680...16,311,256
Ensembl chr 1:17,311,436...17,365,426
JBrowse link
G RSF1 remodeling and spacing factor 1 ISO (PMID:12972596) UniProtKB PMID:12972596 NCBI chr11:72,724,124...72,885,063
Ensembl chr11:76,364,842...76,525,034
JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein ISO (PMID:24526689) UniProtKB PMID:24526689 NCBI chr12:106,093,738...106,132,710
Ensembl chr12:109,489,932...109,529,091
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO (PMID:12972596) UniProtKB PMID:12972596 NCBI chr 4:135,874,888...135,917,096
Ensembl chr 4:147,174,060...147,214,809
JBrowse link
G SMYD3 SET and MYND domain containing 3 ISO (MGI:MGI:5500979|PMID:23752591) MGI PMID:23752591 MGI:MGI:5500979 NCBI chr 1:221,371,348...222,125,774
Ensembl chr 1:226,737,960...227,481,191
JBrowse link
G SOX9 SRY-box transcription factor 9 ISO (PMID:20484372) UniProtKB PMID:20484372 NCBI chr17:66,028,737...66,034,122 JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 ISO (PMID:23378026) UniProtKB PMID:23378026 NCBI chr11:18,636,884...18,665,108
Ensembl chr11:18,321,700...18,580,419
JBrowse link
nucleotide-excision repair, preincision complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GTF2H5 general transcription factor IIH subunit 5 ISO (MGI:MGI:5506835|PMID:23637614) MGI PMID:23637614 MGI:MGI:5506835 NCBI chr 6:156,067,696...156,095,131
Ensembl chr 6:158,126,665...158,153,663
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPV centromere protein V ISO (PMID:18772885) UniProtKB PMID:18772885 NCBI chr17:35,247,664...35,258,656 JBrowse link
G DICER1 dicer 1, ribonuclease III ISO (MGI:MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:MGI:3528782 NCBI chr14:75,709,029...75,780,779
Ensembl chr14:95,036,385...95,107,940
JBrowse link
G HELLS helicase, lymphoid specific ISO (MGI:MGI:3041983|PMID:14612388) UniProtKB PMID:14612388 MGI:MGI:3041983 NCBI chr10:91,282,330...91,344,156
Ensembl chr10:94,790,292...94,847,209
JBrowse link
G LOC100970414 histone H3.3A ISO (MGI:MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:MGI:5694896 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447
JBrowse link
G LOC100988671 histone H3.3A ISO (MGI:MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:MGI:5694896 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106
JBrowse link
positive regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHR aryl hydrocarbon receptor ISO (MGI:MGI:62922|PMID:8215422) MGI PMID:8215422 MGI:MGI:62922 NCBI chr 7:17,949,254...17,998,737 JBrowse link
G CAND1 cullin associated and neddylation dissociated 1 ISO PMID:10567521 UniProt PMID:10567521 RGD:8553447 NCBI chr12:21,592,833...21,638,382
Ensembl chr12:22,099,962...22,145,013
JBrowse link
G CREB1 cAMP responsive element binding protein 1 ISO RGD PMID:16891311 RGD:1625706 NCBI chr2B:94,762,796...94,836,304
Ensembl chr2B:212,891,261...212,958,130
JBrowse link
G ESR1 estrogen receptor 1 ISO (PMID:9841876) CAFA PMID:9841876 NCBI chr 6:149,507,599...149,918,523
Ensembl chr 6:154,317,002...154,631,551
JBrowse link
G IKZF1 IKAROS family zinc finger 1 ISO (MGI:MGI:5317044|PMID:21245044) MGI PMID:21245044 MGI:MGI:5317044 NCBI chr 7:50,946,817...51,047,168
Ensembl chr 7:51,191,685...51,291,245
JBrowse link
G TP53 tumor protein p53 ISO (PMID:24289924) BHF-UCL PMID:24289924 NCBI chr17:7,699,449...7,717,812
Ensembl chr17:7,684,922...7,706,120
JBrowse link
G WNT10B Wnt family member 10B ISO (MGI:MGI:3820325|PMID:19056892) MGI PMID:19056892 MGI:MGI:3820325 NCBI chr12:39,771,163...39,785,411
Ensembl chr12:40,659,106...40,665,734
JBrowse link
positive regulation of shelterin complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TERF1 telomeric repeat binding factor 1 ISO (PMID:24270157) BHF-UCL PMID:24270157 NCBI chr 8:69,545,115...69,583,997 JBrowse link
regulation of centromere complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100988671 histone H3.3A ISO (MGI:MGI:5474379|PMID:23570311) MGI PMID:23570311 MGI:MGI:5474379 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106
JBrowse link
regulation of kinetochore assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RNF4 ring finger protein 4 ISO (PMID:20212317) UniProtKB PMID:20212317 NCBI chr 4:2,614,918...2,661,785
Ensembl chr 4:2,540,612...2,563,937
JBrowse link
G SENP6 SUMO specific peptidase 6 ISO (PMID:20212317) UniProtKB PMID:20212317 NCBI chr 6:73,445,608...73,562,018
Ensembl chr 6:76,736,477...76,852,422
JBrowse link
G TRAPPC12 trafficking protein particle complex 12 ISO (PMID:25918224) UniProtKB PMID:25918224 NCBI chr2A:3,388,191...3,490,496
Ensembl chr2A:3,311,765...3,411,768
JBrowse link
regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF7IP activating transcription factor 7 interacting protein ISO (PMID:12665582) UniProtKB PMID:12665582 NCBI chr12:14,373,084...14,504,286
Ensembl chr12:14,789,794...14,900,411
JBrowse link
RNA polymerase I preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLR1E RNA polymerase I subunit E ISO (MGI:MGI:1928312|PMID:8641287) MGI PMID:8641287 MGI:MGI:1928312 NCBI chr 9:37,331,149...37,348,652
Ensembl chr 9:38,255,067...38,272,498
JBrowse link
G TAF1B TATA-box binding protein associated factor, RNA polymerase I subunit B ISO (PMID:21921199) UniProtKB PMID:21921199 NCBI chr2A:9,834,385...9,927,129
Ensembl chr2A:9,996,146...10,087,740
JBrowse link
RNA polymerase II preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GTF2A2 general transcription factor IIA subunit 2 ISO (PMID:7958899), (PMID:8626665) BHF-UCL PMID:7958899, PMID:8626665 NCBI chr15:38,608,360...38,627,156
Ensembl chr15:56,913,452...56,932,052
JBrowse link
G GTF2B general transcription factor IIB ISO (PMID:8413225)
(PMID:3029109), (PMID:9841876)
UniProtKB PMID:3029109, PMID:8413225, PMID:9841876 NCBI chr 1:91,568,296...91,607,467
Ensembl chr 1:90,319,637...90,359,134
JBrowse link
G GTF2F2 general transcription factor IIF subunit 2 ISO RGD PMID:7929273 RGD:9681417 NCBI chr13:26,286,305...26,452,302
Ensembl chr 3:197,619,461...197,784,798
JBrowse link
G TBP TATA-box binding protein ISO (PMID:9841876) CAFA PMID:9841876 NCBI chr 6:168,714,214...168,732,744
Ensembl chr 6:173,800,240...173,826,909
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12529
    cellular process 11625
      cellular component organization or biogenesis 4979
        cellular component organization 4899
          protein-containing complex subunit organization 1248
            protein-DNA complex subunit organization 120
              protein-DNA complex assembly 85
                DNA recombinase assembly + 2
                DNA replication preinitiation complex assembly + 2
                centromere complex assembly + 17
                dosage compensation complex assembly involved in dosage compensation by hyperactivation of X chromosome 0
                dosage compensation complex assembly involved in dosage compensation by hypoactivation of X chromosome 0
                nucleosome assembly + 46
                nucleotide-excision repair, preincision complex assembly 1
                pre-replicative complex assembly + 0
                protein-DNA ISRE complex assembly 0
                shelterin complex assembly + 1
                telomere-telomerase complex assembly 0
                transcription preinitiation complex assembly + 16
Path 2
Term Annotations click to browse term
  biological_process 12529
    cellular process 11625
      cellular component organization or biogenesis 4979
        cellular component organization 4899
          cellular component assembly 2238
            protein-containing complex assembly 1084
              cellular protein-containing complex assembly 697
                protein-DNA complex assembly 85
                  DNA recombinase assembly + 2
                  DNA replication preinitiation complex assembly + 2
                  centromere complex assembly + 17
                  dosage compensation complex assembly involved in dosage compensation by hyperactivation of X chromosome 0
                  dosage compensation complex assembly involved in dosage compensation by hypoactivation of X chromosome 0
                  nucleosome assembly + 46
                  nucleotide-excision repair, preincision complex assembly 1
                  pre-replicative complex assembly + 0
                  protein-DNA ISRE complex assembly 0
                  shelterin complex assembly + 1
                  telomere-telomerase complex assembly 0
                  transcription preinitiation complex assembly + 16
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.