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ONTOLOGY REPORT - ANNOTATIONS


Term:protein-DNA complex assembly
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Accession:GO:0065004 term browser browse the term
Definition:The aggregation, arrangement and bonding together of proteins and DNA molecules to form a protein-DNA complex.


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protein-DNA complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 ISO (MGI:MGI:1354027|PMID:10692439), (MGI:MGI:3624193|PMID:16603706) MGI PMID:10692439, PMID:16603706 MGI:MGI:1354027, MGI:MGI:3624193 NCBI chr 1:64,630,656...64,646,546 JBrowse link
G HNF1B HNF1 homeobox B ISO RGD PMID:9545279 RGD:2312721 NCBI chr 9:37,437,992...37,493,200
Ensembl chr 9:37,438,583...37,492,993
JBrowse link
G PIAS1 protein inhibitor of activated STAT 1 ISO RGD PMID:16135793 RGD:2303115 NCBI chr30:32,116,363...32,232,530
Ensembl chr30:32,119,311...32,228,945
JBrowse link
G TCF4 transcription factor 4 IEA Ensembl GO_REF:0000107 NCBI chr 1:20,060,788...20,417,367
Ensembl chr 1:20,060,788...20,417,348
JBrowse link
G ZC3H7B zinc finger CCCH-type containing 7B ISO p53, CBP, p21/WAF1 promoter RGD PMID:9215639 RGD:2312285 NCBI chr10:23,882,379...23,944,850
Ensembl chr10:23,884,981...23,920,131
JBrowse link
CENP-A containing nucleosome assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPP centromere protein P IEA InterPro GO_REF:0000002 NCBI chr 1:98,801,384...99,019,371
Ensembl chr 1:98,799,939...99,019,334
JBrowse link
G HJURP Holliday junction recognition protein IEA Ensembl GO_REF:0000107 NCBI chr25:45,215,165...45,230,603
Ensembl chr25:45,215,380...45,230,547
JBrowse link
G ITGB3BP integrin subunit beta 3 binding protein IEA InterPro GO_REF:0000002 NCBI chr 5:46,645,858...46,716,170
Ensembl chr 5:46,681,412...46,701,509
JBrowse link
G MIS18A MIS18 kinetochore protein A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr31:27,025,657...27,039,001
Ensembl chr31:27,025,709...27,039,028
JBrowse link
G NASP nuclear autoantigenic sperm protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:14,742,008...14,782,186
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G OIP5 Opa interacting protein 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:8,377,407...8,396,222
Ensembl chr30:8,381,395...8,396,096
JBrowse link
centromere complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPI centromere protein I IEA InterPro GO_REF:0000002 NCBI chr  X:75,035,147...75,112,991
Ensembl chr  X:75,035,141...75,211,971
JBrowse link
G CENPO centromere protein O IEA InterPro GO_REF:0000002 NCBI chr17:19,132,721...19,154,431
Ensembl chr17:19,141,588...19,154,658
JBrowse link
G CENPV centromere protein V ISO (PMID:18772885) UniProtKB PMID:18772885 NCBI chr 5:39,568,115...39,582,900
Ensembl chr 5:39,567,790...39,582,897
JBrowse link
DNA recombinase assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DMC1 DNA meiotic recombinase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:26,228,662...26,265,377
Ensembl chr10:26,230,428...26,264,820
JBrowse link
G RAD51 RAD51 recombinase ISS
IEA
IBA
(PMID:21873635) UniProtKB
Ensembl
GO_Central
PMID:21873635 GO_REF:0000024, GO_REF:0000107 NCBI chr30:7,842,540...7,877,128
Ensembl chr30:7,842,540...7,877,606
JBrowse link
G RAD52 RAD52 homolog, DNA repair protein IEA InterPro GO_REF:0000002 NCBI chr27:42,915,334...43,032,293
Ensembl chr27:42,915,634...42,951,323
JBrowse link
G SWI5 SWI5 homologous recombination repair protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:55,229,510...55,234,645
Ensembl chr 9:55,229,550...55,234,489
JBrowse link
DNA replication preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDT1 chromatin licensing and DNA replication factor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:64,566,035...64,570,361
Ensembl chr 5:64,566,043...64,570,748
JBrowse link
G GMNN geminin DNA replication inhibitor IEA Ensembl GO_REF:0000107 NCBI chr35:22,796,558...22,805,961
Ensembl chr35:22,798,386...22,805,959
JBrowse link
DNA replication-dependent nucleosome assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1A1 aldo-keto reductase family 1 member A1 IEA Ensembl GO_REF:0000107 NCBI chr15:14,792,398...14,808,805
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G ASF1A anti-silencing function 1A histone chaperone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:58,821,324...58,834,935
Ensembl chr 1:58,821,521...58,946,475
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:48,398,615...48,406,889 JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A IEA Ensembl GO_REF:0000107 NCBI chr20:55,248,286...55,276,425
Ensembl chr20:55,248,288...55,276,900
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B IEA Ensembl GO_REF:0000107 NCBI chr31:31,599,840...31,620,436
Ensembl chr31:31,600,448...31,619,784
JBrowse link
G H3C1 H3 clustered histone 1 IEA Ensembl GO_REF:0000107 NCBI chr35:23,975,775...23,977,803
Ensembl chr35:23,977,201...23,977,611
JBrowse link
G H3C12 H3 clustered histone 12 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr35:25,058,040...25,060,132
Ensembl chr35:25,059,288...25,059,698
JBrowse link
G H3C2 H3 clustered histone 2 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr35:23,989,431...23,989,871 JBrowse link
G H3C7 H3 clustered histone 7 IEA Ensembl GO_REF:0000107 NCBI chr35:24,174,818...24,177,957
Ensembl chr35:24,177,521...24,177,931
JBrowse link
G H4-16 H4 histone 16 IEA Ensembl GO_REF:0000107 NCBI chr27:31,839,899...31,840,463
Ensembl chr27:31,840,011...31,840,322
JBrowse link
G H4C11 H4 clustered histone 11 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr35:25,009,935...25,012,013
Ensembl chr35:25,011,693...25,011,998
JBrowse link
G H4C13 H4 clustered histone 13 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr35:25,015,108...25,051,906 JBrowse link
G H4C14 H4 clustered histone 14 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr17:59,129,585...59,130,048
Ensembl chr17:59,129,682...59,129,993
JBrowse link
G H4C8 H4 clustered histone 8 IEA Ensembl GO_REF:0000107 NCBI chr35:24,174,401...24,194,848
Ensembl chr27:31,840,011...31,840,322
Ensembl chr17:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
JBrowse link
G H4C9 H4 clustered histone 9 IEA Ensembl GO_REF:0000107 NCBI chr35:24,555,412...24,556,402
Ensembl chr35:24,556,015...24,556,326
JBrowse link
G HAT1 histone acetyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr36:16,310,269...16,378,029
Ensembl chr36:16,310,710...16,378,017
JBrowse link
G IPO4 importin 4 IEA Ensembl GO_REF:0000107 NCBI chr 8:4,171,525...4,180,666
Ensembl chr 8:4,171,527...4,181,151
JBrowse link
G NASP nuclear autoantigenic sperm protein IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr15:14,742,008...14,782,186
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 2:68,638,459...68,660,942
Ensembl chr 2:68,638,498...68,660,910
JBrowse link
DNA replication-independent nucleosome assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1A1 aldo-keto reductase family 1 member A1 IEA Ensembl GO_REF:0000107 NCBI chr15:14,792,398...14,808,805
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G ASF1A anti-silencing function 1A histone chaperone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:58,821,324...58,834,935
Ensembl chr 1:58,821,521...58,946,475
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:48,398,615...48,406,889 JBrowse link
G ATRX ATRX chromatin remodeler IEA Ensembl GO_REF:0000107 NCBI chr  X:59,772,067...60,107,016
Ensembl chr  X:59,774,585...60,106,980
JBrowse link
G CABIN1 calcineurin binding protein 1 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr26:28,366,264...28,517,570
Ensembl chr26:28,366,265...28,517,656
JBrowse link
G H3-3A H3.3 histone A IEA Ensembl GO_REF:0000107 NCBI chr 7:38,797,168...38,805,417
Ensembl chr 7:38,797,448...38,805,416
JBrowse link
G H3-3B H3.3 histone B IEA Ensembl GO_REF:0000107 NCBI chr 9:4,805,655...4,808,076
Ensembl chr 9:4,805,650...4,833,503
JBrowse link
G H4-16 H4 histone 16 IEA Ensembl GO_REF:0000107 NCBI chr27:31,839,899...31,840,463
Ensembl chr27:31,840,011...31,840,322
JBrowse link
G H4C11 H4 clustered histone 11 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr35:25,009,935...25,012,013
Ensembl chr35:25,011,693...25,011,998
JBrowse link
G H4C13 H4 clustered histone 13 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr35:25,015,108...25,051,906 JBrowse link
G H4C14 H4 clustered histone 14 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr17:59,129,585...59,130,048
Ensembl chr17:59,129,682...59,129,993
JBrowse link
G H4C8 H4 clustered histone 8 IEA Ensembl GO_REF:0000107 NCBI chr35:24,174,401...24,194,848
Ensembl chr27:31,840,011...31,840,322
Ensembl chr17:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
JBrowse link
G H4C9 H4 clustered histone 9 IEA Ensembl GO_REF:0000107 NCBI chr35:24,555,412...24,556,402
Ensembl chr35:24,556,015...24,556,326
JBrowse link
G HAT1 histone acetyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr36:16,310,269...16,378,029
Ensembl chr36:16,310,710...16,378,017
JBrowse link
G HIRA histone cell cycle regulator IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr26:29,777,984...29,867,992
Ensembl chr26:29,778,086...29,867,559
JBrowse link
G IPO4 importin 4 IEA Ensembl GO_REF:0000107 NCBI chr 8:4,171,525...4,180,666
Ensembl chr 8:4,171,527...4,181,151
JBrowse link
G NASP nuclear autoantigenic sperm protein IEA Ensembl GO_REF:0000107 NCBI chr15:14,742,008...14,782,186
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 2:68,638,459...68,660,942
Ensembl chr 2:68,638,498...68,660,910
JBrowse link
G UBN1 ubinuclein 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:36,542,266...36,581,789
Ensembl chr 6:36,544,405...36,581,797
JBrowse link
kinetochore assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPA centromere protein A IEA Ensembl GO_REF:0000107 NCBI chr17:20,808,320...20,833,747
Ensembl chr17:20,811,663...20,819,568
JBrowse link
G CENPC centromere protein C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:58,013,218...58,091,347
Ensembl chr13:58,013,212...58,231,200
JBrowse link
G CENPE centromere protein E IEA Ensembl GO_REF:0000107 NCBI chr32:24,447,373...24,530,407
Ensembl chr32:24,447,358...24,530,382
JBrowse link
G CENPH centromere protein H IEA InterPro GO_REF:0000002 NCBI chr 2:54,267,782...54,299,083
Ensembl chr 2:54,267,826...54,298,869
JBrowse link
G CENPK centromere protein K IEA InterPro GO_REF:0000002 NCBI chr 2:51,262,475...51,300,016
Ensembl chr 2:51,263,185...51,292,425
JBrowse link
G CENPN centromere protein N IEA InterPro GO_REF:0000002 NCBI chr 5:70,798,322...70,820,927
Ensembl chr 5:70,798,886...70,820,960
JBrowse link
G CENPT centromere protein T IEA Ensembl GO_REF:0000107 NCBI chr 5:81,641,261...81,647,047
Ensembl chr 5:81,641,426...81,647,039
JBrowse link
G CENPW centromere protein W IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:65,171,785...65,178,357
Ensembl chr 1:65,171,779...65,178,559
JBrowse link
G DLGAP5 DLG associated protein 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:30,998,806...31,038,614
Ensembl chr 8:30,994,402...31,036,540
JBrowse link
G LOC102154136 protein MIS12 homolog IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:42,965,045...42,966,881 JBrowse link
G MIS12 MIS12 kinetochore complex component IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:31,314,067...31,319,392 JBrowse link
G POGZ pogo transposable element derived with ZNF domain IEA Ensembl GO_REF:0000107 NCBI chr17:60,464,609...60,511,735
Ensembl chr17:60,465,230...60,511,934
JBrowse link
late meiotic recombination nodule assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCMDC2 minichromosome maintenance domain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr29:16,424,088...16,462,094
Ensembl chr29:16,426,318...16,460,599
JBrowse link
meiotic DNA recombinase assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD51C RAD51 paralog C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:33,289,675...33,347,411
Ensembl chr 9:33,289,742...33,326,405
JBrowse link
meiotic recombination nodule assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCMDC2 minichromosome maintenance domain containing 2 ISO (MGI:MGI:5805564|PMID:27760146) MGI PMID:27760146 MGI:MGI:5805564 NCBI chr29:16,424,088...16,462,094
Ensembl chr29:16,426,318...16,460,599
JBrowse link
negative regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGB1 high mobility group box 1 IEA Ensembl GO_REF:0000107 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G THRA thyroid hormone receptor alpha IEA Ensembl GO_REF:0000107 NCBI chr 9:22,469,466...22,493,445
Ensembl chr 9:22,468,594...22,493,445
JBrowse link
nucleosome assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANP32B acidic nuclear phosphoprotein 32 family member B ISO (PMID:20538007) UniProtKB PMID:20538007 NCBI chr11:55,230,017...55,272,744
Ensembl chr11:55,243,854...55,350,194
JBrowse link
G ASF1A anti-silencing function 1A histone chaperone ISO (PMID:11897662) MGI PMID:11897662 NCBI chr 1:58,821,324...58,834,935
Ensembl chr 1:58,821,521...58,946,475
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone ISO (MGI:MGI:2675150|PMID:12842904) MGI PMID:12842904 MGI:MGI:2675150 NCBI chr20:48,398,615...48,406,889 JBrowse link
G ATRX ATRX chromatin remodeler ISO (PMID:20651253) UniProtKB PMID:20651253 NCBI chr  X:59,772,067...60,107,016
Ensembl chr  X:59,774,585...60,106,980
JBrowse link
G BRD2 bromodomain containing 2 ISS UniProtKB GO_REF:0000024 NCBI chr12:2,534,034...2,546,029
Ensembl chr12:2,534,034...2,546,029
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:55,248,286...55,276,425
Ensembl chr20:55,248,288...55,276,900
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr31:31,599,840...31,620,436
Ensembl chr31:31,600,448...31,619,784
JBrowse link
G DAXX death domain associated protein IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr12:2,755,960...2,760,687
Ensembl chr12:2,755,960...2,761,340
JBrowse link
G GRWD1 glutamate rich WD repeat containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:107,814,402...107,821,107
Ensembl chr 1:107,815,063...107,820,858
JBrowse link
G H1-0 H1.0 linker histone IEA InterPro GO_REF:0000002 NCBI chr10:26,827,748...26,829,909
Ensembl chr10:26,829,089...26,829,673
JBrowse link
G H1-2 H1.2 linker histone, cluster member IEA InterPro GO_REF:0000002 NCBI chr35:24,009,304...24,011,602 JBrowse link
G H1-4 H1.4 linker histone, cluster member IEA InterPro GO_REF:0000002
G H1-5 H1.5 linker histone, cluster member IEA InterPro GO_REF:0000002 NCBI chr35:25,045,883...25,046,775
Ensembl chr35:25,046,023...25,046,703
JBrowse link
G H1-6 H1.6 linker histone, cluster member IEA InterPro GO_REF:0000002 NCBI chr35:24,046,374...24,065,892
Ensembl chr35:24,044,188...24,047,810
JBrowse link
G H1-8 H1.8 linker histone IEA InterPro GO_REF:0000002 NCBI chr20:5,614,822...5,619,136
Ensembl chr20:5,617,001...5,624,352
JBrowse link
G H1-9 H1.9 linker histone IEA InterPro GO_REF:0000002 Ensembl chr 9:26,169,774...26,170,316 JBrowse link
G H2AB1 H2A.B variant histone 1 ISO (PMID:22795134) UniProtKB PMID:22795134 NCBI chr  X:122,910,412...122,913,373
Ensembl chr  X:122,910,968...122,913,382
JBrowse link
G H2AB3 H2A.B variant histone 3 ISO (PMID:22795134) UniProtKB PMID:22795134 NCBI chr  X:123,309,084...123,310,276 JBrowse link
G H2BC1 H2B clustered histone 1 ISO (MGI:MGI:5502464|PMID:23884607)
(MGI:MGI:3702345|PMID:17261847)
UniProtKB
MGI
PMID:17261847, PMID:23884607 MGI:MGI:3702345, MGI:MGI:5502464 NCBI chr35:23,677,952...23,678,432 JBrowse link
G H2BC13 H2B clustered histone 13 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,999,666...25,000,124
Ensembl chr35:24,999,692...25,000,072
JBrowse link
G H2BC14 H2B clustered histone 14 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:25,006,472...25,035,326
Ensembl chr35:25,006,510...25,006,890
JBrowse link
G H2BC15 H2B clustered histone 15 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:25,031,173...25,035,326
Ensembl chr35:25,031,264...25,031,644
JBrowse link
G H2BC18 H2B clustered histone 18 IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr17:59,093,578...59,120,934 JBrowse link
G H2BC2 H2B clustered histone 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:23,690,580...23,691,133
Ensembl chr35:23,690,707...23,691,090
JBrowse link
G H2BC3 H2B clustered histone 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,001,132...24,001,599 JBrowse link
G H2BC4 H2B clustered histone 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,062,068...24,066,934
Ensembl chr35:24,066,399...24,066,779
JBrowse link
G H2BC5 H2B clustered histone 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,093,447...24,102,443
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
JBrowse link
G H2BC6 H2B clustered histone 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,115,034...24,115,551
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
JBrowse link
G H2BC8 H2B clustered histone 8 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,130,229...24,131,736
Ensembl chr35:24,131,296...24,131,676
JBrowse link
G H2BC9 H2B clustered histone 9 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,178,907...24,179,379
Ensembl chr35:24,178,933...24,179,313
JBrowse link
G H2BU1 H2B.U histone 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:603,716...604,222
Ensembl chr14:603,816...604,196
JBrowse link
G H2BU2 H2B.U histone 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:596,292...599,815
Ensembl chr14:599,408...599,788
JBrowse link
G H2BW1 H2B.W histone 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:77,312,494...77,339,851
Ensembl chr  X:77,312,498...77,340,383
JBrowse link
G H3-3A H3.3 histone A ISO (PMID:21636898)
(PMID:25615412)
UniProtKB PMID:21636898, PMID:25615412 NCBI chr 7:38,797,168...38,805,417
Ensembl chr 7:38,797,448...38,805,416
JBrowse link
G H3-3B H3.3 histone B ISO (PMID:25615412)
(PMID:21636898)
UniProtKB PMID:21636898, PMID:25615412 NCBI chr 9:4,805,655...4,808,076
Ensembl chr 9:4,805,650...4,833,503
JBrowse link
G H3-4 H3.4 histone ISO (PMID:20498094)
(PMID:25615412)
UniProtKB PMID:20498094, PMID:25615412 NCBI chr14:627,178...627,587
Ensembl chr14:627,190...627,581
JBrowse link
G H3C1 H3 clustered histone 1 ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr35:23,975,775...23,977,803
Ensembl chr35:23,977,201...23,977,611
JBrowse link
G H3C12 H3 clustered histone 12 ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr35:25,058,040...25,060,132
Ensembl chr35:25,059,288...25,059,698
JBrowse link
G H3C13 H3 clustered histone 13 IEA Ensembl GO_REF:0000107 NCBI chr17:59,121,020...59,129,410
Ensembl chr17:59,121,976...59,122,386
JBrowse link
G H3C14 H3 clustered histone 14 ISO (PMID:21636898), (PMID:25615412) UniProtKB PMID:21636898, PMID:25615412 NCBI chr17:59,145,128...59,146,186 JBrowse link
G H3C15 H3 clustered histone 15 ISO (PMID:21636898), (PMID:25615412) UniProtKB PMID:21636898, PMID:25615412 NCBI chr17:59,158,336...59,183,035 JBrowse link
G H3C2 H3 clustered histone 2 ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr35:23,989,431...23,989,871 JBrowse link
G H4-16 H4 histone 16 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:31,839,899...31,840,463
Ensembl chr27:31,840,011...31,840,322
JBrowse link
G H4C11 H4 clustered histone 11 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:25,009,935...25,012,013
Ensembl chr35:25,011,693...25,011,998
JBrowse link
G H4C13 H4 clustered histone 13 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr35:25,015,108...25,051,906 JBrowse link
G H4C14 H4 clustered histone 14 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr17:59,129,585...59,130,048
Ensembl chr17:59,129,682...59,129,993
JBrowse link
G H4C7 H4 clustered histone 7 IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr35:24,174,554...24,174,829 JBrowse link
G H4C8 H4 clustered histone 8 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,174,401...24,194,848
Ensembl chr27:31,840,011...31,840,322
Ensembl chr17:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
JBrowse link
G H4C9 H4 clustered histone 9 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,555,412...24,556,402
Ensembl chr35:24,556,015...24,556,326
JBrowse link
G HMGB1 high mobility group box 1 ISO (PMID:2465778) AgBase PMID:2465778 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G HMGB2 high mobility group box 2 ISS AgBase GO_REF:0000024 NCBI chr25:23,939,024...23,941,720
Ensembl chr25:23,939,027...23,941,606
JBrowse link
G HP1BP3 heterochromatin protein 1 binding protein 3 IEA InterPro GO_REF:0000002 NCBI chr 2:78,164,239...78,203,032
Ensembl chr 2:78,164,173...78,201,555
JBrowse link
G KAT6A lysine acetyltransferase 6A IEA InterPro GO_REF:0000002 NCBI chr16:23,604,629...23,717,047
Ensembl chr16:23,604,200...23,724,252
JBrowse link
G KAT6B lysine acetyltransferase 6B IEA InterPro GO_REF:0000002 NCBI chr 4:25,131,580...25,303,355
Ensembl chr 4:25,131,844...25,301,825
JBrowse link
G LOC111094860 protein SET-like IEA InterPro GO_REF:0000002 NCBI chr  X:62,802,664...62,803,091 JBrowse link
G LOC403555 SET translocation IEA InterPro GO_REF:0000002 NCBI chr  X:91,851,844...91,869,284 JBrowse link
G MACROH2A1 macroH2A.1 histone IEA UniProtKB GO_REF:0000104 NCBI chr11:23,369,957...23,448,235
Ensembl chr11:23,370,300...23,438,219
JBrowse link
G MACROH2A2 macroH2A.2 histone IEA UniProtKB GO_REF:0000104 NCBI chr 4:21,057,935...21,087,097
Ensembl chr 4:21,057,947...21,086,730
JBrowse link
G MCM2 minichromosome maintenance complex component 2 IEA Ensembl GO_REF:0000107 NCBI chr20:1,682,928...1,702,689
Ensembl chr20:1,682,886...1,702,366
JBrowse link
G NAA60 N-alpha-acetyltransferase 60, NatF catalytic subunit ISO (PMID:21981917) UniProtKB PMID:21981917 NCBI chr 6:37,759,233...37,784,224
Ensembl chr 6:37,761,497...37,793,290
JBrowse link
G NAP1L1 nucleosome assembly protein 1 like 1 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr15:19,141,803...19,175,576
Ensembl chr15:19,143,284...19,175,581
JBrowse link
G NAP1L2 nucleosome assembly protein 1 like 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:57,085,962...57,088,235
Ensembl chr  X:57,086,769...57,088,157
JBrowse link
G NAP1L3 nucleosome assembly protein 1 like 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:69,231,981...69,233,827
Ensembl chr  X:69,232,078...69,233,499
JBrowse link
G NAP1L4 nucleosome assembly protein 1 like 4 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr18:46,910,366...46,946,710
Ensembl chr18:46,911,278...46,945,525
JBrowse link
G NAP1L5 nucleosome assembly protein 1 like 5 IEA InterPro GO_REF:0000002 NCBI chr32:11,956,795...11,958,754
Ensembl chr32:11,958,122...11,958,658
JBrowse link
G NASP nuclear autoantigenic sperm protein ISO (PMID:25615412) UniProtKB PMID:25615412 NCBI chr15:14,742,008...14,782,186
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G NPM1 nucleophosmin 1 ISO (PMID:11602260) UniProtKB PMID:11602260 NCBI chr 4:40,756,464...40,770,174
Ensembl chr 4:40,756,465...40,770,175
JBrowse link
G PADI4 peptidyl arginine deiminase 4 ISO (MGI:MGI:5545819|PMID:24463520) UniProtKB PMID:24463520 MGI:MGI:5545819 NCBI chr 2:80,912,814...80,942,767
Ensembl chr 2:80,905,391...80,993,973
JBrowse link
G RSF1 remodeling and spacing factor 1 IEA Ensembl GO_REF:0000107 NCBI chr21:20,968,356...21,124,308
Ensembl chr21:20,968,193...21,119,642
JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein IEA Ensembl GO_REF:0000107 NCBI chr26:18,308,065...18,345,903
Ensembl chr26:18,308,733...18,345,353
JBrowse link
G SET SET nuclear proto-oncogene IEA InterPro GO_REF:0000002 NCBI chr 9:54,896,464...54,907,698 JBrowse link
G SHPRH SNF2 histone linker PHD RING helicase IEA InterPro GO_REF:0000002 NCBI chr 1:37,076,318...37,170,664
Ensembl chr 1:37,077,949...37,163,041
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 IEA Ensembl GO_REF:0000107 NCBI chr15:42,731,147...42,771,577
Ensembl chr15:42,731,426...42,770,624
JBrowse link
G SMYD3 SET and MYND domain containing 3 IEA Ensembl GO_REF:0000107 NCBI chr 7:36,561,080...37,250,336
Ensembl chr 7:36,565,901...37,250,578
JBrowse link
G SOX9 SRY-box transcription factor 9 ISS UniProtKB GO_REF:0000024 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr21:41,021,317...41,042,955
Ensembl chr21:41,023,629...41,042,492
JBrowse link
G TSPYL1 TSPY like 1 IEA InterPro GO_REF:0000002 NCBI chr12:71,933,904...71,937,508
Ensembl chr12:71,935,792...71,937,285
JBrowse link
G TSPYL2 TSPY like 2 IEA InterPro GO_REF:0000002 NCBI chr  X:45,001,112...45,008,023
Ensembl chr  X:45,001,100...45,007,869
JBrowse link
G TSPYL5 TSPY like 5 IEA InterPro GO_REF:0000002 NCBI chr29:41,500,395...41,503,975
Ensembl chr29:41,503,312...41,503,956
JBrowse link
nucleotide-excision repair, preincision complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GTF2H5 general transcription factor IIH subunit 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:47,669,196...47,681,370
Ensembl chr 1:47,669,248...47,681,368
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPV centromere protein V IEA Ensembl GO_REF:0000107 NCBI chr 5:39,568,115...39,582,900
Ensembl chr 5:39,567,790...39,582,897
JBrowse link
G DICER1 dicer 1, ribonuclease III ISO (MGI:MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:MGI:3528782 NCBI chr 8:63,970,245...64,029,438
Ensembl chr 8:63,972,027...64,019,879
JBrowse link
G H3-3A H3.3 histone A IEA Ensembl GO_REF:0000107 NCBI chr 7:38,797,168...38,805,417
Ensembl chr 7:38,797,448...38,805,416
JBrowse link
G H3-3B H3.3 histone B IEA Ensembl GO_REF:0000107 NCBI chr 9:4,805,655...4,808,076
Ensembl chr 9:4,805,650...4,833,503
JBrowse link
G HELLS helicase, lymphoid specific IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:8,660,866...8,705,570
Ensembl chr28:8,661,008...8,705,580
JBrowse link
positive regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHR aryl hydrocarbon receptor ISO (MGI:MGI:62922|PMID:8215422) MGI PMID:8215422 MGI:MGI:62922 NCBI chr14:31,743,704...31,793,484
Ensembl chr14:31,686,170...31,791,444
JBrowse link
G CAND1 cullin associated and neddylation dissociated 1 ISO PMID:10567521 UniProt PMID:10567521 RGD:8553447 NCBI chr10:9,652,176...9,683,373
Ensembl chr10:9,641,732...9,680,118
JBrowse link
G CREB1 cAMP responsive element binding protein 1 ISO RGD PMID:16891311 RGD:1625706 NCBI chr37:15,921,214...15,978,492
Ensembl chr37:15,939,138...15,977,556
JBrowse link
G ESR1 estrogen receptor 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:42,081,952...42,368,544
Ensembl chr 1:42,081,969...42,368,544
JBrowse link
G IKZF1 IKAROS family zinc finger 1 ISO (MGI:MGI:5317044|PMID:21245044) MGI PMID:21245044 MGI:MGI:5317044 NCBI chr18:1,661,851...1,750,987
Ensembl chr18:1,661,690...1,770,768
JBrowse link
G LOC100687259 26S proteasome regulatory subunit 10B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr32:35,814,756...35,816,311 JBrowse link
G PSMC2 proteasome 26S subunit, ATPase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:16,845,593...16,859,010
Ensembl chr18:16,845,594...16,858,911
JBrowse link
G PSMC3 proteasome 26S subunit, ATPase 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:42,212,083...42,218,958 JBrowse link
G PSMC4 proteasome 26S subunit, ATPase 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:113,548,351...113,557,725
Ensembl chr 1:113,548,373...113,557,630
JBrowse link
G PSMC5 proteasome 26S subunit, ATPase 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:11,783,422...11,787,624
Ensembl chr 9:11,783,466...11,787,617
JBrowse link
G TP53 tumor protein p53 IEA Ensembl GO_REF:0000107 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109
JBrowse link
G WNT10B Wnt family member 10B IEA Ensembl GO_REF:0000107 NCBI chr27:5,599,905...5,605,506
Ensembl chr27:5,601,089...5,605,501
JBrowse link
positive regulation of shelterin complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TERF1 telomeric repeat binding factor 1 IEA Ensembl GO_REF:0000107 NCBI chr29:21,664,378...21,701,491
Ensembl chr29:21,664,186...21,700,495
JBrowse link
pre-replicative complex assembly involved in nuclear cell cycle DNA replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCM2 minichromosome maintenance complex component 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:1,682,928...1,702,689
Ensembl chr20:1,682,886...1,702,366
JBrowse link
G MCM3 minichromosome maintenance complex component 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:19,924,017...19,945,576
Ensembl chr12:19,920,210...19,945,605
JBrowse link
G MCM4 minichromosome maintenance complex component 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr29:244,634...261,154
Ensembl chr29:244,656...260,991
JBrowse link
G MCM5 minichromosome maintenance complex component 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:28,721,421...28,738,457
Ensembl chr10:28,721,660...28,738,390
JBrowse link
G MCM6 minichromosome maintenance complex component 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:38,627,154...38,660,312
Ensembl chr19:38,627,183...38,660,280
JBrowse link
G MCM7 minichromosome maintenance complex component 7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:9,492,654...9,499,846
Ensembl chr 6:9,492,573...9,499,855
JBrowse link
G MCMDC2 minichromosome maintenance domain containing 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr29:16,424,088...16,462,094
Ensembl chr29:16,426,318...16,460,599
JBrowse link
G ORC3 origin recognition complex subunit 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:47,047,341...47,108,126
Ensembl chr12:47,047,195...47,108,117
JBrowse link
regulation of centromere complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3-3A H3.3 histone A IEA Ensembl GO_REF:0000107 NCBI chr 7:38,797,168...38,805,417
Ensembl chr 7:38,797,448...38,805,416
JBrowse link
G H3-3B H3.3 histone B IEA Ensembl GO_REF:0000107 NCBI chr 9:4,805,655...4,808,076
Ensembl chr 9:4,805,650...4,833,503
JBrowse link
regulation of kinetochore assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RNF4 ring finger protein 4 IEA Ensembl GO_REF:0000107 NCBI chr 3:61,721,752...61,759,797
Ensembl chr 3:61,723,124...61,759,730
JBrowse link
G SENP6 SUMO specific peptidase 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:37,218,707...37,336,244
Ensembl chr12:37,218,839...37,335,692
JBrowse link
G TRAPPC12 trafficking protein particle complex 12 IEA Ensembl GO_REF:0000107 NCBI chr17:1,988,952...2,072,854
Ensembl chr17:1,999,613...2,072,502
JBrowse link
regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF7IP activating transcription factor 7 interacting protein IEA Ensembl GO_REF:0000107 NCBI chr27:32,082,615...32,194,954
Ensembl chr27:32,086,675...32,177,364
JBrowse link
RNA polymerase I preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ2A bromodomain adjacent to zinc finger domain 2A IEA GOC GO_REF:0000108 NCBI chr10:834,018...868,817
Ensembl chr10:836,465...863,874
JBrowse link
G POLR1E RNA polymerase I subunit E IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr11:53,793,324...53,808,725
Ensembl chr11:53,793,042...53,808,724
JBrowse link
G RRN3 RRN3 homolog, RNA polymerase I transcription factor IEA GOC GO_REF:0000108 NCBI chr 6:28,478,770...28,507,722
Ensembl chr 6:28,478,829...28,507,696
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 IEA GOC GO_REF:0000108 NCBI chr20:50,175,489...50,268,865
Ensembl chr20:50,175,687...50,268,836
JBrowse link
G TAF1B TATA-box binding protein associated factor, RNA polymerase I subunit B IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107 NCBI chr17:6,873,275...6,940,432
Ensembl chr17:6,873,360...6,937,789
JBrowse link
G TAF1C TATA-box binding protein associated factor, RNA polymerase I subunit C IEA GOC GO_REF:0000108 NCBI chr 5:68,175,196...68,184,267
Ensembl chr 5:68,175,014...68,184,277
JBrowse link
G UBTF upstream binding transcription factor IEA GOC GO_REF:0000108 NCBI chr 9:19,177,778...19,189,805
Ensembl chr 9:19,179,174...19,189,181
JBrowse link
RNA polymerase II preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRF2 BRF2 RNA polymerase III transcription initiation factor subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:27,543,588...27,547,712
Ensembl chr16:27,543,858...27,547,106
JBrowse link
G DR1 down-regulator of transcription 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:55,687,581...55,717,118
Ensembl chr 6:55,693,752...55,716,516
JBrowse link
G GTF2A2 general transcription factor IIA subunit 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:24,502,825...24,522,248
Ensembl chr30:24,484,701...24,522,207
JBrowse link
G GTF2B general transcription factor IIB IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:59,491,986...59,527,142
Ensembl chr 6:59,492,055...59,527,054
JBrowse link
G GTF2F2 general transcription factor IIF subunit 2 ISO RGD PMID:7929273 RGD:9681417 NCBI chr22:5,757,445...5,904,725
Ensembl chr22:5,757,960...5,904,814
JBrowse link
G TAF1 TATA-box binding protein associated factor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:55,693,091...55,764,268 JBrowse link
G TAF11 TATA-box binding protein associated factor 11 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:4,088,203...4,095,300
Ensembl chr12:4,088,680...4,094,125
JBrowse link
G TAF12 TATA-box binding protein associated factor 12 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:71,865,274...71,898,236
Ensembl chr 2:71,865,289...71,898,236
JBrowse link
G TAF7 TATA-box binding protein associated factor 7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:36,295,387...36,297,681
Ensembl chr 2:36,295,911...36,296,960
JBrowse link
G TAF7L TATA-box binding protein associated factor 7 like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:75,219,448...75,238,309
Ensembl chr  X:75,220,248...75,239,041
JBrowse link
G TBP TATA-box binding protein IEA Ensembl GO_REF:0000107 NCBI chr12:72,458,959...72,479,271
Ensembl chr12:72,459,041...72,479,124
JBrowse link
RNA polymerase III preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:54,654,406...54,743,443
Ensembl chr 2:54,654,481...54,740,787
JBrowse link
G BRF1 BRF1 RNA polymerase III transcription initiation factor subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:72,588,578...72,632,259
Ensembl chr 8:72,588,693...72,632,263
JBrowse link
transcription preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRF1 BRF1 RNA polymerase III transcription initiation factor subunit IEA InterPro GO_REF:0000002 NCBI chr 8:72,588,578...72,632,259
Ensembl chr 8:72,588,693...72,632,263
JBrowse link
G BRF2 BRF2 RNA polymerase III transcription initiation factor subunit IEA InterPro GO_REF:0000002 NCBI chr16:27,543,588...27,547,712
Ensembl chr16:27,543,858...27,547,106
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16162
    cellular process 15440
      cellular component organization or biogenesis 6022
        cellular component organization 5853
          protein-containing complex subunit organization 1621
            protein-DNA complex subunit organization 206
              protein-DNA complex assembly 167
                DNA recombinase assembly + 6
                DNA replication preinitiation complex assembly + 2
                centromere complex assembly + 28
                dosage compensation complex assembly involved in dosage compensation by hyperactivation of X chromosome 0
                dosage compensation complex assembly involved in dosage compensation by hypoactivation of X chromosome 0
                nucleosome assembly + 92
                nucleotide-excision repair, preincision complex assembly 1
                pre-replicative complex assembly + 8
                protein-DNA ISRE complex assembly 0
                shelterin complex assembly + 1
                telomere-telomerase complex assembly 0
                transcription preinitiation complex assembly + 35
Path 2
Term Annotations click to browse term
  biological_process 16162
    cellular process 15440
      cellular component organization or biogenesis 6022
        cellular component organization 5853
          cellular component assembly 2718
            protein-containing complex assembly 1433
              cellular protein-containing complex assembly 984
                protein-DNA complex assembly 167
                  DNA recombinase assembly + 6
                  DNA replication preinitiation complex assembly + 2
                  centromere complex assembly + 28
                  dosage compensation complex assembly involved in dosage compensation by hyperactivation of X chromosome 0
                  dosage compensation complex assembly involved in dosage compensation by hypoactivation of X chromosome 0
                  nucleosome assembly + 92
                  nucleotide-excision repair, preincision complex assembly 1
                  pre-replicative complex assembly + 8
                  protein-DNA ISRE complex assembly 0
                  shelterin complex assembly + 1
                  telomere-telomerase complex assembly 0
                  transcription preinitiation complex assembly + 35
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.