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ONTOLOGY REPORT - ANNOTATIONS


Term:protein-DNA complex assembly
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Accession:GO:0065004 term browser browse the term
Definition:The aggregation, arrangement and bonding together of proteins and DNA molecules to form a protein-DNA complex.


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protein-DNA complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EP300 E1A binding protein p300 ISO p53, CBP, p21/WAF1 promoter RGD PMID:9215639 RGD:2312285 NCBI chr 5:7,311,165...7,394,515
Ensembl chr 5:7,311,171...7,393,760
JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:37,219,887...37,231,321
Ensembl chr 1:37,219,883...37,231,385
JBrowse link
G HNF1B HNF1 homeobox B ISO RGD PMID:9545279 RGD:2312721 NCBI chr12:39,143,119...39,201,631
Ensembl chr12:39,143,121...39,313,511
JBrowse link
G PIAS1 protein inhibitor of activated STAT 1 ISO RGD PMID:16135793 RGD:2303115 NCBI chr 1:165,957,114...166,087,242
Ensembl chr 1:165,853,126...166,087,240
JBrowse link
G TCF4 transcription factor 4 IEA Ensembl GO_REF:0000107 NCBI chr 1:104,718,809...105,079,919
Ensembl chr 1:104,719,137...105,079,919
JBrowse link
CENP-A containing nucleosome assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPP centromere protein P IEA InterPro GO_REF:0000002 NCBI chr 3:42,053,074...42,309,745
Ensembl chr 3:42,053,058...42,308,381
JBrowse link
G HJURP Holliday junction recognition protein IEA Ensembl GO_REF:0000107 NCBI chr15:134,106,561...134,123,163
Ensembl chr15:134,106,569...134,123,107
JBrowse link
G MIS18A MIS18 kinetochore protein A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:195,912,044...195,928,309
Ensembl chr13:195,911,299...195,928,292
JBrowse link
G NASP nuclear autoantigenic sperm protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369
JBrowse link
G OIP5 Opa interacting protein 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:130,036,478...130,054,058
Ensembl chr 1:130,036,480...130,047,043
JBrowse link
centromere complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPI centromere protein I IEA InterPro GO_REF:0000002 NCBI chr  X:82,776,375...82,826,651
Ensembl chr  X:82,776,443...82,828,410
JBrowse link
G CENPV centromere protein V ISO (PMID:18772885) UniProtKB PMID:18772885 NCBI chr12:59,200,041...59,215,941
Ensembl chr12:59,200,031...59,209,664
JBrowse link
DNA recombinase assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DMC1 DNA meiotic recombinase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:9,431,236...9,470,333
Ensembl chr 5:9,431,307...9,470,549
JBrowse link
G RAD51 RAD51 recombinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:130,592,414...130,640,326
Ensembl chr 1:130,586,647...130,640,136
JBrowse link
G RAD52 RAD52 homolog, DNA repair protein IEA InterPro GO_REF:0000002 NCBI chr 5:68,140,846...68,223,587
Ensembl chr 5:68,133,699...68,223,662
JBrowse link
G SWI5 SWI5 homologous recombination repair protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:268,720,232...268,726,527
Ensembl chr 1:268,719,554...268,726,527
JBrowse link
DNA replication preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDT1 chromatin licensing and DNA replication factor 1 ISO (PMID:11125146) CAFA PMID:11125146 NCBI chr 6:893,377...897,706 JBrowse link
G GMNN geminin DNA replication inhibitor IEA Ensembl GO_REF:0000107 NCBI chr 7:19,585,968...19,595,346
Ensembl chr 7:19,585,999...19,599,879
JBrowse link
DNA replication-dependent nucleosome assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASF1A anti-silencing function 1A histone chaperone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:43,200,339...43,215,019
Ensembl chr 1:43,200,414...43,214,913
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:65,063,186...65,072,681
Ensembl chr 2:65,062,766...65,072,681
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A IEA Ensembl GO_REF:0000107 NCBI chr 2:74,380,706...74,411,875
Ensembl chr 2:74,380,708...74,411,825
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B IEA Ensembl GO_REF:0000107 NCBI chr13:200,048,096...200,074,902
Ensembl chr13:200,048,131...200,072,556
JBrowse link
G HAT1 histone acetyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr15:78,022,147...78,079,669
Ensembl chr15:78,022,154...78,079,665
JBrowse link
G HIST1H3E histone cluster 1, H3e ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 7:20,853,945...20,855,172
Ensembl chr 7:20,896,374...20,896,784
JBrowse link
G IPO4 importin 4 IEA Ensembl GO_REF:0000107 NCBI chr 7:75,109,844...75,118,739
Ensembl chr 7:75,100,272...75,118,741
JBrowse link
G LOC100158117 histone H4 IEA Ensembl GO_REF:0000107 NCBI chr 7:21,595,863...21,596,243 JBrowse link
G LOC100621389 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 4:99,208,554...99,208,961 JBrowse link
G LOC106504121 histone H3.1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 7:20,872,535...20,875,411
Ensembl chr 7:20,896,374...20,896,784
JBrowse link
G LOC110261477 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 7:20,773,579...20,773,986 JBrowse link
G LOC110261673 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 7:20,910,487...20,912,374
Ensembl chr 7:20,908,345...20,912,379
JBrowse link
G LOC110261674 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 7:21,224,973...21,225,379 JBrowse link
G NASP nuclear autoantigenic sperm protein IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:88,987,092...89,006,815 JBrowse link
G TM9SF1 transmembrane 9 superfamily member 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:75,103,971...75,110,027
Ensembl chr 7:75,100,272...75,118,741
JBrowse link
DNA replication-independent nucleosome assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASF1A anti-silencing function 1A histone chaperone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:43,200,339...43,215,019
Ensembl chr 1:43,200,414...43,214,913
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:65,063,186...65,072,681
Ensembl chr 2:65,062,766...65,072,681
JBrowse link
G ATRX ATRX chromatin remodeler IEA Ensembl GO_REF:0000107 NCBI chr  X:61,584,028...61,872,341
Ensembl chr  X:61,584,848...61,872,288
JBrowse link
G CABIN1 calcineurin binding protein 1 IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr14:49,686,196...49,787,723
Ensembl chr14:49,686,197...49,787,688
JBrowse link
G H3-3A H3 histone, family 3A IEA Ensembl GO_REF:0000107 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000
JBrowse link
G HAT1 histone acetyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr15:78,022,147...78,079,669
Ensembl chr15:78,022,154...78,079,665
JBrowse link
G HIRA histone cell cycle regulator IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:51,029,117...51,102,409
Ensembl chr14:51,029,126...51,102,506
JBrowse link
G IPO4 importin 4 IEA Ensembl GO_REF:0000107 NCBI chr 7:75,109,844...75,118,739
Ensembl chr 7:75,100,272...75,118,741
JBrowse link
G LOC100158117 histone H4 IEA Ensembl GO_REF:0000107 NCBI chr 7:21,595,863...21,596,243 JBrowse link
G LOC100521680 histone H3.3 IEA Ensembl GO_REF:0000107 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
JBrowse link
G LOC100621389 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 4:99,208,554...99,208,961 JBrowse link
G LOC110261477 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 7:20,773,579...20,773,986 JBrowse link
G LOC110261673 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 7:20,910,487...20,912,374
Ensembl chr 7:20,908,345...20,912,379
JBrowse link
G LOC110261674 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 7:21,224,973...21,225,379 JBrowse link
G NASP nuclear autoantigenic sperm protein IEA Ensembl GO_REF:0000107 NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:88,987,092...89,006,815 JBrowse link
G TM9SF1 transmembrane 9 superfamily member 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:75,103,971...75,110,027
Ensembl chr 7:75,100,272...75,118,741
JBrowse link
G UBN1 ubinuclein 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:37,512,306...37,555,255
Ensembl chr 3:37,512,314...37,555,185
JBrowse link
kinetochore assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APITD1 apoptosis-inducing, TAF9-like domain 1 IEA InterPro GO_REF:0000002 NCBI chr 6:70,700,802...70,711,719
Ensembl chr 6:70,701,694...70,711,717
JBrowse link
G CENPA centromere protein A IEA Ensembl GO_REF:0000107 NCBI chr 3:112,263,912...112,272,638
Ensembl chr 3:112,263,913...112,272,621
JBrowse link
G CENPC centromere protein C IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 8:65,237,825...65,315,788
Ensembl chr 8:65,238,088...65,315,714
JBrowse link
G CENPE centromere protein E IEA Ensembl GO_REF:0000107 NCBI chr 8:117,888,968...117,965,325
Ensembl chr 8:117,889,009...117,965,792
JBrowse link
G CENPH centromere protein H IEA InterPro GO_REF:0000002 NCBI chr16:47,353,319...47,378,746
Ensembl chr16:47,353,324...47,378,745
JBrowse link
G CENPK centromere protein K IEA InterPro GO_REF:0000002 NCBI chr16:44,008,673...44,080,565
Ensembl chr16:44,041,485...44,080,526
JBrowse link
G CENPN centromere protein N IEA InterPro GO_REF:0000002 NCBI chr 6:7,227,981...7,254,927
Ensembl chr 6:7,227,982...7,254,866
JBrowse link
G CENPT centromere protein T IEA InterPro GO_REF:0000002 NCBI chr 6:28,450,568...28,456,620
Ensembl chr 6:28,446,687...28,456,230
JBrowse link
G CENPW centromere protein W IEA Ensembl GO_REF:0000107 NCBI chr 1:36,405,693...36,695,989
Ensembl chr 1:36,417,053...36,695,954
JBrowse link
G CENPX centromere protein X IEA InterPro GO_REF:0000002 NCBI chr12:991,618...994,849 JBrowse link
G DLGAP5 DLG associated protein 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:184,500,791...184,550,028
Ensembl chr 1:184,499,914...184,550,020
JBrowse link
G MIS12 MIS12 kinetochore complex component IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:51,505,376...51,508,337
Ensembl chr12:51,505,381...51,507,943
JBrowse link
G POGZ pogo transposable element derived with ZNF domain IEA Ensembl GO_REF:0000107 NCBI chr 4:97,776,579...97,833,287
Ensembl chr 4:97,776,589...97,833,285
JBrowse link
late meiotic recombination nodule assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCMDC2 minichromosome maintenance domain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr 4:67,850,585...67,892,438
Ensembl chr 4:67,847,817...67,895,867
JBrowse link
meiotic DNA recombinase assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD51C RAD51 paralog C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:34,975,949...35,018,112
Ensembl chr12:34,975,957...35,019,018
JBrowse link
meiotic recombination nodule assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCMDC2 minichromosome maintenance domain containing 2 ISO (MGI:MGI:5805564|PMID:27760146) MGI PMID:27760146 MGI:MGI:5805564 NCBI chr 4:67,850,585...67,892,438
Ensembl chr 4:67,847,817...67,895,867
JBrowse link
mitotic DNA replication preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC45 cell division cycle 45 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:51,133,111...51,158,604
Ensembl chr14:51,133,408...51,158,606
JBrowse link
negative regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGB1 high mobility group box 1 ISS UniProt GO_REF:0000024 NCBI chr11:7,195,556...7,321,071 JBrowse link
G THRA thyroid hormone receptor alpha IEA Ensembl GO_REF:0000107 NCBI chr12:22,270,506...22,296,684
Ensembl chr12:22,270,062...22,296,618
JBrowse link
nucleosome assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANP32B acidic nuclear phosphoprotein 32 family member B ISO (PMID:20538007) UniProtKB PMID:20538007 NCBI chr 1:239,842,062...239,868,404
Ensembl chr 1:239,842,063...239,919,984
JBrowse link
G ASF1A anti-silencing function 1A histone chaperone ISO (PMID:11897662) MGI PMID:11897662 NCBI chr 1:43,200,339...43,215,019
Ensembl chr 1:43,200,414...43,214,913
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone ISO (MGI:MGI:2675150|PMID:12842904) MGI PMID:12842904 MGI:MGI:2675150 NCBI chr 2:65,063,186...65,072,681
Ensembl chr 2:65,062,766...65,072,681
JBrowse link
G ATRX ATRX chromatin remodeler ISO (PMID:20651253) UniProtKB PMID:20651253 NCBI chr  X:61,584,028...61,872,341
Ensembl chr  X:61,584,848...61,872,288
JBrowse link
G BRD2 bromodomain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr 7:25,096,579...25,162,591
Ensembl chr 7:25,150,658...25,165,433
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:200,048,096...200,074,902
Ensembl chr13:200,048,131...200,072,556
JBrowse link
G DAXX death domain associated protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:29,676,854...29,681,145
Ensembl chr 7:29,676,854...29,681,110
JBrowse link
G GRWD1 glutamate rich WD repeat containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:53,849,673...53,856,229
Ensembl chr 6:53,849,850...53,859,385
JBrowse link
G H1-3 H1.3 linker histone, cluster member IEA InterPro GO_REF:0000002 Ensembl chr 7:20,862,942...20,882,693 JBrowse link
G H1-4 H1.4 linker histone, cluster member IEA InterPro GO_REF:0000002 Ensembl chr 7:20,819,639...20,854,590 JBrowse link
G H1-6 H1.6 linker histone, cluster member IEA InterPro GO_REF:0000002 NCBI chr 7:20,774,135...20,777,244 JBrowse link
G H1FOO oocyte-specific H1 histone IEA InterPro GO_REF:0000002 NCBI chr13:68,921,491...68,943,061
Ensembl chr13:68,938,024...68,942,744
JBrowse link
G H2AFY H2A histone family, member Y IEA UniProt GO_REF:0000104 NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,535,131...137,623,889
JBrowse link
G H2BC11 H2B clustered histone 11 IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 7:21,219,627...21,227,153 JBrowse link
G H3-3A H3 histone, family 3A ISO (PMID:21636898)
(PMID:25615412)
UniProtKB PMID:21636898, PMID:25615412 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000
JBrowse link
G HIST1H2BD histone cluster 1, H2bd IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,821,090...20,829,491
Ensembl chr 7:20,821,091...20,829,493
JBrowse link
G HIST1H3E histone cluster 1, H3e ISO (PMID:20498094), (PMID:21636898), (PMID:24699735)
(PMID:25615412)
UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 7:20,853,945...20,855,172
Ensembl chr 7:20,896,374...20,896,784
JBrowse link
G HMGB1 high mobility group box 1 IDA (PMID:2465778) AgBase PMID:2465778 NCBI chr11:7,195,556...7,321,071 JBrowse link
G HMGB2 high mobility group box 2 IDA (PMID:2465778) AgBase PMID:2465778 NCBI chr14:16,709,966...16,712,288
Ensembl chr14:16,710,047...16,717,126
JBrowse link
G HP1BP3 heterochromatin protein 1 binding protein 3 IEA InterPro GO_REF:0000002 NCBI chr 6:78,975,551...79,007,921
Ensembl chr 6:78,975,550...79,007,214
JBrowse link
G KAT6B lysine acetyltransferase 6B IEA InterPro GO_REF:0000002 NCBI chr14:77,390,790...77,597,674
Ensembl chr14:77,375,758...77,597,674
JBrowse link
G LOC100152135 histone H2B type 1-A-like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,465,043...20,466,398
Ensembl chr 7:20,465,129...20,465,512
JBrowse link
G LOC100152878 histone H2B type 1-A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,467,395...20,471,314 JBrowse link
G LOC100155267 histone H2B type 2-F-like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:45,760,877...45,761,561 JBrowse link
G LOC100156127 histone H2B type 1-M IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,842,185...20,842,659 JBrowse link
G LOC100156937 histone H2B type 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,862,784...20,863,395
Ensembl chr 7:20,897,623...20,907,522
JBrowse link
G LOC100158117 histone H4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:21,595,863...21,596,243 JBrowse link
G LOC100510904 histone H1.0 IEA InterPro GO_REF:0000002 NCBI chr 5:10,038,944...10,041,242
Ensembl chr 5:10,038,951...10,041,080
JBrowse link
G LOC100515302 histone H2B type 3-B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:51,687,852...51,694,237
Ensembl chr 2:51,693,136...51,693,516
JBrowse link
G LOC100517800 histone H2A-Bbd type 2/3 ISO (PMID:22795134) UniProtKB PMID:22795134 NCBI chr  X:125,277,575...125,280,752 JBrowse link
G LOC100519930 histone H2B subacrosomal variant-like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:49,000,352...49,001,341 JBrowse link
G LOC100521680 histone H3.3 ISO (PMID:21636898)
(PMID:25615412)
UniProtKB PMID:21636898, PMID:25615412 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
JBrowse link
G LOC100525798 nucleosome assembly protein 1-like 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:58,969,577...59,176,807
Ensembl chr  X:58,966,830...58,972,091
JBrowse link
G LOC100621389 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 4:99,208,554...99,208,961 JBrowse link
G LOC100625034 testis-specific Y-encoded protein 4-like IEA InterPro GO_REF:0000002 NCBI chr  Y:40,190,400...40,192,431 JBrowse link
G LOC100738859 histone H2B type 2-E IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:99,169,471...99,171,665
Ensembl chr 4:99,169,485...99,186,310
JBrowse link
G LOC102160938 late histone H2B.L4-like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:6,017,053...6,022,069
Ensembl chr18:6,019,516...6,022,049
JBrowse link
G LOC102161782 histone H3 ISO (PMID:21636898), (PMID:25615412) UniProtKB PMID:21636898, PMID:25615412 NCBI chr 4:99,187,225...99,187,722 JBrowse link
G LOC102162202 histone H2B type 2-E IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:99,189,505...99,191,226
Ensembl chr 4:99,169,485...99,186,310
JBrowse link
G LOC106504121 histone H3.1 ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 7:20,872,535...20,875,411
Ensembl chr 7:20,896,374...20,896,784
JBrowse link
G LOC106506652 putative testis-specific Y-encoded-like protein 3 IEA InterPro GO_REF:0000002 NCBI chr17:35,836,203...35,838,807 JBrowse link
G LOC110259305 histone H3.1 ISO (PMID:20498094)
(PMID:25615412)
UniProtKB PMID:20498094, PMID:25615412 NCBI chr 2:51,709,942...51,710,952 JBrowse link
G LOC110261477 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 7:20,773,579...20,773,986 JBrowse link
G LOC110261673 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 7:20,910,487...20,912,374
Ensembl chr 7:20,908,345...20,912,379
JBrowse link
G LOC110261674 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 7:21,224,973...21,225,379 JBrowse link
G MACROH2A2 macroH2A.2 histone IEA UniProt GO_REF:0000104 NCBI chr14:73,002,385...73,055,228
Ensembl chr14:73,003,117...73,055,226
JBrowse link
G MCM2 minichromosome maintenance complex component 2 IEA Ensembl GO_REF:0000107 NCBI chr13:72,630,378...72,651,270
Ensembl chr13:72,630,380...72,657,620
JBrowse link
G NAA60 N-alpha-acetyltransferase 60, NatF catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr 3:38,763,444...38,812,862
Ensembl chr 3:38,755,420...38,782,056
JBrowse link
G NAP1L1 nucleosome assembly protein 1 like 1 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 5:39,329,628...39,363,699
Ensembl chr 5:39,328,051...39,363,711
JBrowse link
G NAP1L4 nucleosome assembly protein 1 like 4 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 2:2,070,140...2,117,503
Ensembl chr 2:2,067,870...2,117,487
JBrowse link
G NASP nuclear autoantigenic sperm protein ISO (PMID:25615412) UniProtKB PMID:25615412 NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369
JBrowse link
G NEFH neurofilament heavy IEA InterPro GO_REF:0000002 NCBI chr14:46,559,698...46,568,686
Ensembl chr14:46,559,860...46,569,910
JBrowse link
G NPM1 nucleophosmin 1 ISO (PMID:11602260) UniProtKB PMID:11602260 NCBI chr16:52,767,263...52,781,862
Ensembl chr16:52,765,296...52,781,740
JBrowse link
G PADI4 peptidyl arginine deiminase 4 IEA Ensembl GO_REF:0000107 NCBI chr 6:75,935,909...75,966,275
Ensembl chr 6:75,935,903...75,966,169
JBrowse link
G RSF1 remodeling and spacing factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:12,121,824...12,278,120
Ensembl chr 9:12,121,825...12,278,120
JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein IEA Ensembl GO_REF:0000107 NCBI chr14:42,223,752...42,259,992
Ensembl chr14:42,223,725...42,297,113
JBrowse link
G SET SET nuclear proto-oncogene IEA InterPro GO_REF:0000002 NCBI chr 1:269,050,447...269,064,462 JBrowse link
G SHPRH SNF2 histone linker PHD RING helicase IEA InterPro GO_REF:0000002 NCBI chr 1:19,612,915...19,697,444
Ensembl chr 1:19,612,823...19,695,272
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 IEA Ensembl GO_REF:0000107 NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,575...84,224,871
JBrowse link
G SMYD3 SET and MYND domain containing 3 IEA Ensembl GO_REF:0000107 NCBI chr10:18,267,598...19,019,520
Ensembl chr10:18,267,603...19,019,537
JBrowse link
G SOX9 SRY-box transcription factor 9 ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315
JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:40,581,816...40,604,040 JBrowse link
G TSPYL1 TSPY like 1 IEA InterPro GO_REF:0000002 NCBI chr 1:81,906,168...81,909,461
Ensembl chr 1:81,908,075...81,909,613
JBrowse link
G TSPYL2 TSPY like 2 IEA InterPro GO_REF:0000002 NCBI chr  X:45,909,688...45,916,859
Ensembl chr  X:45,909,686...45,916,941
JBrowse link
G TSPYL5 TSPY like 5 IEA InterPro GO_REF:0000002 NCBI chr 4:39,362,945...39,367,405
Ensembl chr 4:39,362,962...39,369,885
JBrowse link
nucleotide-excision repair, preincision complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GTF2H5 general transcription factor IIH subunit 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:8,928,280...8,935,030
Ensembl chr 1:8,917,240...8,934,919
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPV centromere protein V IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:59,200,041...59,215,941
Ensembl chr12:59,200,031...59,209,664
JBrowse link
G DICER1 dicer 1, ribonuclease III ISO (MGI:MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:MGI:3528782 NCBI chr 7:116,361,630...116,436,471
Ensembl chr 7:116,361,630...116,436,519
JBrowse link
G H3-3A H3 histone, family 3A IEA Ensembl GO_REF:0000107 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000
JBrowse link
G HELLS helicase, lymphoid specific IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:105,923,727...105,967,003
Ensembl chr14:105,923,552...105,966,998
JBrowse link
G LOC100521680 histone H3.3 IEA Ensembl GO_REF:0000107 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
JBrowse link
positive regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHR aryl hydrocarbon receptor ISO (MGI:MGI:62922|PMID:8215422) MGI PMID:8215422 MGI:MGI:62922 NCBI chr 9:86,511,866...86,555,950
Ensembl chr 9:86,511,369...86,555,943
JBrowse link
G CAND1 cullin associated and neddylation dissociated 1 ISO PMID:10567521 UniProt PMID:10567521 RGD:8553447 NCBI chr 5:31,657,508...31,700,163
Ensembl chr 5:31,657,623...31,696,866
JBrowse link
G CREB1 cAMP responsive element binding protein 1 ISO RGD PMID:16891311 RGD:1625706 NCBI chr15:110,705,548...110,773,037
Ensembl chr15:110,697,408...110,771,755
JBrowse link
G ESR1 estrogen receptor 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:14,217,032...14,604,906
Ensembl chr 1:14,217,036...14,493,363
JBrowse link
G IKZF1 IKAROS family zinc finger 1 ISO (MGI:MGI:5317044|PMID:21245044) MGI PMID:21245044 MGI:MGI:5317044 NCBI chr 9:136,372,202...136,464,942
Ensembl chr 9:136,372,724...136,464,942
JBrowse link
G PSMC2 proteasome 26S subunit, ATPase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:103,362,684...103,376,048
Ensembl chr 9:103,362,598...103,376,346
JBrowse link
G PSMC3 proteasome 26S subunit, ATPase 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:15,185,482...15,191,189
Ensembl chr 2:15,066,547...15,193,085
JBrowse link
G PSMC4 proteasome 26S subunit, ATPase 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:48,406,237...48,414,470
Ensembl chr 6:48,406,376...48,416,216
JBrowse link
G PSMC6 proteasome 26S subunit, ATPase 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:182,329,070...182,354,959
Ensembl chr 1:182,328,521...182,354,958
JBrowse link
G RAPSN receptor associated protein of the synapse IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:15,166,968...15,181,011
Ensembl chr 2:15,066,547...15,193,085
JBrowse link
G TP53 tumor protein p53 IEA Ensembl GO_REF:0000107 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,643...52,953,819
JBrowse link
G WNT10B Wnt family member 10B IEA Ensembl GO_REF:0000107 NCBI chr 5:14,997,377...15,013,928
Ensembl chr 5:14,997,381...15,013,919
JBrowse link
positive regulation of shelterin complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TERF1 telomeric repeat binding factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 4:62,797,244...62,831,459
Ensembl chr 4:62,796,999...62,831,422
JBrowse link
pre-replicative complex assembly involved in nuclear cell cycle DNA replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCM2 minichromosome maintenance complex component 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:72,630,378...72,651,270
Ensembl chr13:72,630,380...72,657,620
JBrowse link
G MCM3 minichromosome maintenance complex component 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:46,084,648...46,104,425
Ensembl chr 7:46,084,661...46,104,375
JBrowse link
G MCM4 minichromosome maintenance complex component 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:79,674,737...79,686,964
Ensembl chr 4:79,674,737...79,687,307
JBrowse link
G MCM5 minichromosome maintenance complex component 5 IBA (PMID:21873635) GO_Central PMID:21873635
G MCM6 minichromosome maintenance complex component 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:15,923,638...15,978,587
Ensembl chr15:15,917,042...15,985,405
JBrowse link
G MCM7 minichromosome maintenance complex component 7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:8,005,890...8,014,047
Ensembl chr 3:8,005,900...8,014,053
JBrowse link
G MCMDC2 minichromosome maintenance domain containing 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:67,850,585...67,892,438
Ensembl chr 4:67,847,817...67,895,867
JBrowse link
G ORC3 origin recognition complex subunit 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:55,982,132...56,044,244
Ensembl chr 1:55,954,159...56,042,895
JBrowse link
protein localization to kinetochore involved in kinetochore assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPT centromere protein T IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:28,450,568...28,456,620
Ensembl chr 6:28,446,687...28,456,230
JBrowse link
regulation of centromere complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3-3A H3 histone, family 3A IEA Ensembl GO_REF:0000107 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000
JBrowse link
G LOC100521680 histone H3.3 IEA Ensembl GO_REF:0000107 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
JBrowse link
regulation of kinetochore assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RNF4 ring finger protein 4 IEA Ensembl GO_REF:0000107 NCBI chr 8:1,353,532...1,380,637
Ensembl chr 8:1,353,236...1,380,637
JBrowse link
G SENP6 SUMO specific peptidase 6 IEA Ensembl GO_REF:0000107 NCBI chr 1:90,166,997...90,299,981
Ensembl chr 1:90,167,944...90,299,981
JBrowse link
G TRAPPC12 trafficking protein particle complex 12 IEA Ensembl GO_REF:0000107 NCBI chr 3:131,307,185...131,357,996
Ensembl chr 3:131,307,204...131,358,001
JBrowse link
regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF7IP activating transcription factor 7 interacting protein IEA Ensembl GO_REF:0000107 NCBI chr 5:58,022,734...58,149,980
Ensembl chr 5:58,022,740...58,150,185
JBrowse link
RNA polymerase I preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ2A bromodomain adjacent to zinc finger domain 2A IEA GOC GO_REF:0000108 NCBI chr 5:21,932,527...21,983,033
Ensembl chr 5:21,933,894...21,983,021
JBrowse link
G PIH1D1 PIH1 domain containing 1 IEA GOC GO_REF:0000108 NCBI chr 6:54,524,172...54,529,700
Ensembl chr 6:54,524,172...54,537,588
JBrowse link
G POLR1E RNA polymerase I subunit E IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:238,197,659...238,219,475
Ensembl chr 1:238,197,666...238,220,524
JBrowse link
G RRN3 RRN3 homolog, RNA polymerase I transcription factor IEA GOC GO_REF:0000108 NCBI chr 3:7,537,131...7,571,990
Ensembl chr 3:7,537,133...7,572,391
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 IEA GOC GO_REF:0000108 NCBI chr 2:69,717,175...69,810,301
Ensembl chr 2:69,662,238...69,810,298
JBrowse link
G TAF1B TATA-box binding protein associated factor, RNA polymerase I subunit B IEA Ensembl GO_REF:0000107 NCBI chr 3:126,527,381...126,586,403
Ensembl chr 3:126,527,383...126,586,274
JBrowse link
G TAF1C TATA-box binding protein associated factor, RNA polymerase I subunit C IEA GOC GO_REF:0000108 NCBI chr 6:4,448,672...4,457,109
Ensembl chr 6:4,448,780...4,457,499
JBrowse link
G UBTF upstream binding transcription factor IEA GOC GO_REF:0000108 NCBI chr12:18,989,833...19,006,145
Ensembl chr12:18,989,836...19,006,141
JBrowse link
RNA polymerase II preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRF2 BRF2 RNA polymerase III transcription initiation factor subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:48,568,207...48,573,036
Ensembl chr15:48,568,202...48,573,035
JBrowse link
G DR1 down-regulator of transcription 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:123,815,088...123,835,875
Ensembl chr 4:123,815,456...123,835,826
JBrowse link
G GTF2A2 general transcription factor IIA subunit 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:112,371,276...112,399,541
Ensembl chr 1:112,344,223...112,399,541
JBrowse link
G GTF2B general transcription factor IIB IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:127,522,802...127,559,605
Ensembl chr 4:127,522,524...127,571,378
JBrowse link
G GTF2F2 general transcription factor IIF subunit 2 ISO RGD PMID:7929273 RGD:9681417 NCBI chr11:21,987,410...22,144,921
Ensembl chr11:21,983,822...22,144,954
JBrowse link
G LOC110259058 transcription initiation factor TFIID subunit 11 pseudogene IBA (PMID:21873635) GO_Central PMID:21873635
G TAF11 TATA-box binding protein associated factor 11 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:30,799,992...30,811,771
Ensembl chr 7:30,799,965...30,811,768
JBrowse link
G TAF12 TATA-box binding protein associated factor 12 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:85,618,679...85,643,087
Ensembl chr 6:85,618,688...85,643,076
JBrowse link
G TAF7 TATA-box binding protein associated factor 7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:142,949,271...142,952,611
Ensembl chr 2:142,947,310...142,952,507
JBrowse link
G TAF7L TATA-box binding protein associated factor 7 like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:82,930,258...82,951,065
Ensembl chr  X:82,930,264...82,951,042
JBrowse link
G TBP TATA-box binding protein ISO (PMID:9841876) CAFA PMID:9841876 NCBI chr 1:5,669...23,675 JBrowse link
RNA polymerase III preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:47,801,273...47,909,513
Ensembl chr16:47,801,315...47,908,852
JBrowse link
G BRF1 BRF1 RNA polymerase III transcription initiation factor subunit IBA (PMID:21873635) GO_Central PMID:21873635
transcription preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRF1 BRF1 RNA polymerase III transcription initiation factor subunit IEA InterPro GO_REF:0000002
G GTF2B general transcription factor IIB IEA InterPro GO_REF:0000002 NCBI chr 4:127,522,802...127,559,605
Ensembl chr 4:127,522,524...127,571,378
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16524
    cellular process 15756
      cellular component organization or biogenesis 5964
        cellular component organization 5795
          protein-containing complex subunit organization 1592
            protein-DNA complex subunit organization 194
              protein-DNA complex assembly 154
                DNA recombinase assembly + 6
                DNA replication preinitiation complex assembly + 3
                centromere complex assembly + 27
                dosage compensation complex assembly involved in dosage compensation by hyperactivation of X chromosome 0
                dosage compensation complex assembly involved in dosage compensation by hypoactivation of X chromosome 0
                nucleosome assembly + 77
                nucleotide-excision repair, preincision complex assembly 1
                pre-replicative complex assembly + 8
                protein-DNA ISRE complex assembly 0
                shelterin complex assembly + 1
                telomere-telomerase complex assembly 0
                transcription preinitiation complex assembly + 36
Path 2
Term Annotations click to browse term
  biological_process 16524
    cellular process 15756
      cellular component organization or biogenesis 5964
        cellular component organization 5795
          cellular component assembly 2693
            protein-containing complex assembly 1409
              cellular protein-containing complex assembly 951
                protein-DNA complex assembly 154
                  DNA recombinase assembly + 6
                  DNA replication preinitiation complex assembly + 3
                  centromere complex assembly + 27
                  dosage compensation complex assembly involved in dosage compensation by hyperactivation of X chromosome 0
                  dosage compensation complex assembly involved in dosage compensation by hypoactivation of X chromosome 0
                  nucleosome assembly + 77
                  nucleotide-excision repair, preincision complex assembly 1
                  pre-replicative complex assembly + 8
                  protein-DNA ISRE complex assembly 0
                  shelterin complex assembly + 1
                  telomere-telomerase complex assembly 0
                  transcription preinitiation complex assembly + 36
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.