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ONTOLOGY REPORT - ANNOTATIONS


Term:protein-lipid complex assembly
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Accession:GO:0065005 term browser browse the term
Definition:The aggregation, arrangement and bonding together of proteins and lipids to form a protein-lipid complex.


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protein-lipid complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOA4 apolipoprotein A4 IEA Ensembl GO_REF:0000107 NCBI chr 5:16,751,588...16,754,215
Ensembl chr 5:16,751,799...16,754,837
JBrowse link
chylomicron assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LPCAT3 lysophosphatidylcholine acyltransferase 3 IEA Ensembl GO_REF:0000107 NCBI chr27:38,028,438...38,068,854
Ensembl chr27:38,028,120...38,068,502
JBrowse link
G PLAGL2 PLAG1 like zinc finger 2 IEA Ensembl GO_REF:0000107 NCBI chr24:21,594,679...21,608,728
Ensembl chr24:21,597,754...21,608,696
JBrowse link
high-density lipoprotein particle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA1 ATP binding cassette subfamily A member 1 IEA Ensembl GO_REF:0000107 NCBI chr11:60,761,669...60,869,753
Ensembl chr11:60,761,655...60,890,496
JBrowse link
G ABCA7 ATP binding cassette subfamily A member 7 ISO (PMID:14570867) Alzheimers_University_of_Toronto PMID:14570867 NCBI chr20:57,668,371...57,684,111
Ensembl chr20:57,667,706...57,677,342
JBrowse link
G APOA1 apolipoprotein A1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:16,740,071...16,742,081
Ensembl chr 5:16,740,130...16,741,943
JBrowse link
G APOA2 apolipoprotein A2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr38:21,263,641...21,265,887
Ensembl chr38:21,262,789...21,265,887
JBrowse link
G APOA4 apolipoprotein A4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:16,751,588...16,754,215
Ensembl chr 5:16,751,799...16,754,837
JBrowse link
G APOA5 apolipoprotein A5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:16,774,117...16,777,535
Ensembl chr 5:16,774,501...16,777,768
JBrowse link
G APOE apolipoprotein E ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr 1:110,525,717...110,528,534
Ensembl chr 1:110,525,722...110,528,440
JBrowse link
G APOM apolipoprotein M IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:1,137,474...1,142,337
Ensembl chr12:1,140,316...1,142,331
JBrowse link
lipid tube assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BIN1 bridging integrator 1 ISO (PMID:19004523) Alzheimers_University_of_Toronto PMID:19004523 NCBI chr19:23,503,934...23,534,407
Ensembl chr19:23,375,363...23,534,303
JBrowse link
G SH3GL2 SH3 domain containing GRB2 like 2, endophilin A1 ISO RGD PMID:20484046 RGD:13464358 NCBI chr11:37,720,793...37,769,027
Ensembl chr11:37,577,053...37,767,572
JBrowse link
G SNX9 sorting nexin 9 IEA Ensembl GO_REF:0000107 NCBI chr 1:47,346,214...47,457,417
Ensembl chr 1:47,343,668...47,455,937
JBrowse link
plasma lipoprotein particle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MTTP microsomal triglyceride transfer protein ISO (PMID:8876250)
(PMID:16478722), (PMID:23475612), (PMID:26224785)
UniProt PMID:8876250, PMID:16478722, PMID:23475612, PMID:26224785 NCBI chr32:21,582,368...21,626,806
Ensembl chr32:21,570,801...21,628,624
JBrowse link
positive regulation of high-density lipoprotein particle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA1 ATP binding cassette subfamily A member 1 IEA Ensembl GO_REF:0000107 NCBI chr11:60,761,669...60,869,753
Ensembl chr11:60,761,655...60,890,496
JBrowse link
G NR1H2 nuclear receptor subfamily 1 group H member 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:106,332,691...106,339,168
Ensembl chr 1:106,332,798...106,339,135
JBrowse link
regulation of high-density lipoprotein particle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LCAT lecithin-cholesterol acyltransferase ISO (MGI:MGI:3848791|PMID:19065001) UniProtKB PMID:19065001 MGI:MGI:3848791 NCBI chr 5:81,556,047...81,559,313 JBrowse link
very-low-density lipoprotein particle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACSL3 acyl-CoA synthetase long chain family member 3 IEA Ensembl GO_REF:0000107 NCBI chr37:28,882,264...28,929,451
Ensembl chr37:28,864,147...28,938,866
JBrowse link
G ARF1 ADP ribosylation factor 1 ISO RGD PMID:15618550 RGD:9684856 NCBI chr14:835,476...836,424
Ensembl chr14:835,476...836,424
JBrowse link
G CES1 carboxylesterase 1 ISO (MGI:MGI:4440377|PMID:20197051) MGI PMID:20197051 MGI:MGI:4440377 NCBI chr 2:60,276,723...60,305,970
Ensembl chr 2:60,236,150...60,321,178
JBrowse link
G DGAT1 diacylglycerol O-acyltransferase 1 ISO (PMID:15308631) BHF-UCL PMID:15308631 NCBI chr13:37,745,395...37,761,337
Ensembl chr13:37,741,706...37,756,916
JBrowse link
G FECH ferrochelatase ISO (MGI:MGI:1930023|PMID:11160364) MGI PMID:11160364 MGI:MGI:1930023 NCBI chr 1:18,352,184...18,384,251
Ensembl chr 1:18,345,811...18,383,092
JBrowse link
G LPCAT3 lysophosphatidylcholine acyltransferase 3 IEA Ensembl GO_REF:0000107 NCBI chr27:38,028,438...38,068,854
Ensembl chr27:38,028,120...38,068,502
JBrowse link
G MFSD2A major facilitator superfamily domain containing 2A IEA Ensembl GO_REF:0000107 NCBI chr15:2,966,433...2,979,030
Ensembl chr15:2,966,461...2,978,968
JBrowse link
G SOAT1 sterol O-acyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:20,481,386...20,556,706
Ensembl chr 7:20,486,069...20,546,055
JBrowse link
G SOAT2 sterol O-acyltransferase 2 IEA Ensembl GO_REF:0000107 NCBI chr27:2,053,063...2,062,773
Ensembl chr27:2,053,067...2,062,329
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16187
    cellular process 15463
      cellular component organization or biogenesis 6050
        cellular component organization 5882
          cellular component assembly 2737
            protein-containing complex assembly 1438
              protein-lipid complex assembly 24
                lipid antigen assembly with MHC class Ib protein complex 0
                lipid tube assembly + 3
                plasma lipoprotein particle assembly + 21
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.