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ONTOLOGY REPORT - ANNOTATIONS


Term:protein-lipid complex assembly
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Accession:GO:0065005 term browser browse the term
Definition:The aggregation, arrangement and bonding together of proteins and lipids to form a protein-lipid complex.


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protein-lipid complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOA4 apolipoprotein A4 IMP (PMID:16159879) BHF-UCL PMID:16159879 NCBI chr11:116,820,700...116,823,304
Ensembl chr11:116,820,700...116,823,304
JBrowse link
chylomicron assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOA1 apolipoprotein A1 TAS Reactome Reactome:R-HSA-8963888 NCBI chr11:116,835,751...116,837,950
Ensembl chr11:116,835,751...116,837,622
Ensembl chr11:116,835,751...116,837,622
JBrowse link
G APOA2 apolipoprotein A2 TAS Reactome Reactome:R-HSA-8963888 NCBI chr 1:161,222,292...161,223,628
Ensembl chr 1:161,222,292...161,223,631
JBrowse link
G APOA4 apolipoprotein A4 TAS (PMID:16159879) BHF-UCL PMID:16159879 Reactome:R-HSA-8963888 NCBI chr11:116,820,700...116,823,304
Ensembl chr11:116,820,700...116,823,304
JBrowse link
G APOB apolipoprotein B TAS Reactome Reactome:R-HSA-8963888 NCBI chr 2:21,001,429...21,044,073
Ensembl chr 2:21,001,429...21,044,073
JBrowse link
G APOC2 apolipoprotein C2 TAS Reactome Reactome:R-HSA-8963888 NCBI chr19:44,946,051...44,949,565
Ensembl chr19:44,945,971...44,949,566
Ensembl chr19:44,945,971...44,949,566
JBrowse link
G APOC3 apolipoprotein C3 TAS Reactome Reactome:R-HSA-8963888 NCBI chr11:116,829,907...116,833,072
Ensembl chr11:116,829,706...116,833,072
JBrowse link
G APOE apolipoprotein E TAS Reactome Reactome:R-HSA-8963888 NCBI chr19:44,905,796...44,909,393
Ensembl chr19:44,905,791...44,909,393
JBrowse link
G LPCAT3 lysophosphatidylcholine acyltransferase 3 ISS UniProt GO_REF:0000024 NCBI chr12:6,976,185...7,018,508
Ensembl chr12:6,976,185...7,018,477
JBrowse link
G MTTP microsomal triglyceride transfer protein TAS Reactome Reactome:R-HSA-8963888 NCBI chr 4:99,564,130...99,623,997
Ensembl chr 4:99,563,761...99,623,999
JBrowse link
G P4HB prolyl 4-hydroxylase subunit beta TAS Reactome Reactome:R-HSA-8963888 NCBI chr17:81,843,159...81,860,535
Ensembl chr17:81,843,161...81,860,624
JBrowse link
G PLAGL2 PLAG1 like zinc finger 2 IEA Ensembl GO_REF:0000107 NCBI chr20:32,192,504...32,207,743
Ensembl chr20:32,192,504...32,207,743
JBrowse link
high-density lipoprotein particle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA1 ATP binding cassette subfamily A member 1 TAS
IMP
(PMID:10431236), (PMID:14754908), (PMID:17305370) Reactome
BHF-UCL
PMID:10431236, PMID:14754908, PMID:17305370 Reactome:R-HSA-8963896 NCBI chr 9:104,781,006...104,928,232
Ensembl chr 9:104,781,006...104,928,155
JBrowse link
G ABCA7 ATP binding cassette subfamily A member 7 IDA (PMID:14570867) Alzheimers_University_of_Toronto PMID:14570867 NCBI chr19:1,040,107...1,065,572
Ensembl chr19:1,039,997...1,065,572
Ensembl chr19:1,039,997...1,065,572
JBrowse link
G APOA1 apolipoprotein A1 IDA
IBA
TAS
(PMID:190223)
(PMID:21873635)
BHF-UCL
GO_Central
Reactome
PMID:190223, PMID:21873635 Reactome:R-HSA-8963896 NCBI chr11:116,835,751...116,837,950
Ensembl chr11:116,835,751...116,837,622
Ensembl chr11:116,835,751...116,837,622
JBrowse link
G APOA2 apolipoprotein A2 IDA
IBA
(PMID:218942)
(PMID:21873635)
BHF-UCL
GO_Central
PMID:218942, PMID:21873635 NCBI chr 1:161,222,292...161,223,628
Ensembl chr 1:161,222,292...161,223,631
JBrowse link
G APOA4 apolipoprotein A4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:116,820,700...116,823,304
Ensembl chr11:116,820,700...116,823,304
JBrowse link
G APOA5 apolipoprotein A5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:116,789,367...116,792,420
Ensembl chr11:116,789,367...116,792,420
JBrowse link
G APOE apolipoprotein E IDA (PMID:14754908), (PMID:17305370) UniProt PMID:14754908, PMID:17305370 NCBI chr19:44,905,796...44,909,393
Ensembl chr19:44,905,791...44,909,393
JBrowse link
G APOM apolipoprotein M ISS
IBA
(PMID:15793583)
(PMID:21873635)
BHF-UCL
GO_Central
PMID:15793583, PMID:21873635 NCBI chr 6:31,652,404...31,658,210
Ensembl chr 6:31,652,416...31,658,210
JBrowse link
G BMP1 bone morphogenetic protein 1 TAS Reactome Reactome:R-HSA-8963896 NCBI chr 8:22,165,372...22,212,326
Ensembl chr 8:22,165,140...22,212,326
JBrowse link
G PRKACA protein kinase cAMP-activated catalytic subunit alpha TAS Reactome Reactome:R-HSA-8963896 NCBI chr19:14,091,688...14,117,762
Ensembl chr19:14,091,688...14,118,084
JBrowse link
G PRKACB protein kinase cAMP-activated catalytic subunit beta TAS Reactome Reactome:R-HSA-8963896 NCBI chr 1:84,078,079...84,238,498
Ensembl chr 1:84,078,062...84,238,498
JBrowse link
G PRKACG protein kinase cAMP-activated catalytic subunit gamma TAS Reactome Reactome:R-HSA-8963896 NCBI chr 9:69,012,504...69,014,113
Ensembl chr 9:69,012,504...69,014,113
Ensembl chr 9:69,012,504...69,014,113
JBrowse link
G ZDHHC8 zinc finger DHHC-type palmitoyltransferase 8 TAS Reactome Reactome:R-HSA-8963896 NCBI chr22:20,131,804...20,148,007
Ensembl chr22:20,129,456...20,148,007
JBrowse link
lipid tube assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BIN1 bridging integrator 1 IMP (PMID:19004523) Alzheimers_University_of_Toronto PMID:19004523 NCBI chr 2:127,048,023...127,107,154
Ensembl chr 2:127,048,027...127,107,288
JBrowse link
G SH3GL2 SH3 domain containing GRB2 like 2, endophilin A1 IEA Ensembl GO_REF:0000107 NCBI chr 9:17,579,066...17,797,124
Ensembl chr 9:17,579,066...17,797,124
JBrowse link
G SNX9 sorting nexin 9 IDA (PMID:17948057) UniProtKB PMID:17948057 NCBI chr 6:157,716,046...157,945,077
Ensembl chr 6:157,700,387...157,945,077
JBrowse link
lipid tube assembly involved in organelle fusion term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PCDHGA3 protocadherin gamma subfamily A, 3 IEA Ensembl GO_REF:0000107 NCBI chr 5:141,343,829...141,512,975
Ensembl chr 5:141,343,829...141,512,979
Ensembl chr 5:141,343,829...141,512,979
JBrowse link
plasma lipoprotein particle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MTTP microsomal triglyceride transfer protein IMP
IDA
(PMID:8876250)
(PMID:16478722), (PMID:23475612), (PMID:26224785)
UniProt PMID:8876250, PMID:16478722, PMID:23475612, PMID:26224785 NCBI chr 4:99,564,130...99,623,997
Ensembl chr 4:99,563,761...99,623,999
JBrowse link
positive regulation of high-density lipoprotein particle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA1 ATP binding cassette subfamily A member 1 ISS UniProt GO_REF:0000024 NCBI chr 9:104,781,006...104,928,232
Ensembl chr 9:104,781,006...104,928,155
JBrowse link
G NR1H2 nuclear receptor subfamily 1 group H member 2 IEA Ensembl GO_REF:0000107 NCBI chr19:50,376,457...50,383,388
Ensembl chr19:50,329,653...50,383,388
JBrowse link
regulation of high-density lipoprotein particle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA1 ATP binding cassette subfamily A member 1 TAS (PMID:24097981) BHF-UCL PMID:24097981 NCBI chr 9:104,781,006...104,928,232
Ensembl chr 9:104,781,006...104,928,155
JBrowse link
G LCAT lecithin-cholesterol acyltransferase IEA Ensembl GO_REF:0000107 NCBI chr16:67,939,750...67,944,120
Ensembl chr16:67,939,750...67,944,131
JBrowse link
very-low-density lipoprotein particle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACSL3 acyl-CoA synthetase long chain family member 3 IMP (PMID:18003621) UniProtKB PMID:18003621 NCBI chr 2:222,861,036...222,944,639
Ensembl chr 2:222,860,942...222,944,639
JBrowse link
G APOB apolipoprotein B IC
TAS
(PMID:15308631) BHF-UCL
Reactome
PMID:15308631 Reactome:R-HSA-8866423 NCBI chr 2:21,001,429...21,044,073
Ensembl chr 2:21,001,429...21,044,073
JBrowse link
G APOC1 apolipoprotein C1 TAS (PMID:18992221) Reactome PMID:18992221 Reactome:R-HSA-8866423 NCBI chr19:44,914,325...44,919,346
Ensembl chr19:44,914,247...44,919,349
JBrowse link
G APOC3 apolipoprotein C3 TAS (PMID:18399797) BHF-UCL PMID:18399797 NCBI chr11:116,829,907...116,833,072
Ensembl chr11:116,829,706...116,833,072
JBrowse link
G APOC4 apolipoprotein C4 TAS Reactome Reactome:R-HSA-8866423 NCBI chr19:44,942,237...44,945,496
Ensembl chr19:44,942,237...44,945,496
JBrowse link
G ARF1 ADP ribosylation factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:228,082,708...228,099,212
Ensembl chr 1:228,082,660...228,099,212
JBrowse link
G CES1 carboxylesterase 1 ISO (MGI:MGI:4440377|PMID:20197051) MGI PMID:20197051 MGI:MGI:4440377 NCBI chr16:55,802,851...55,833,127
Ensembl chr16:55,802,851...55,833,337
JBrowse link
G DGAT1 diacylglycerol O-acyltransferase 1 IMP (PMID:15308631) BHF-UCL PMID:15308631 NCBI chr 8:144,314,584...144,326,852
Ensembl chr 8:144,314,584...144,326,910
JBrowse link
G FECH ferrochelatase ISO (MGI:MGI:1930023|PMID:11160364) MGI PMID:11160364 MGI:MGI:1930023 NCBI chr18:57,544,377...57,586,708
Ensembl chr18:57,544,389...57,586,702
Ensembl chr18:57,544,389...57,586,702
JBrowse link
G LPCAT3 lysophosphatidylcholine acyltransferase 3 ISS UniProt GO_REF:0000024 NCBI chr12:6,976,185...7,018,508
Ensembl chr12:6,976,185...7,018,477
JBrowse link
G MFSD2A major facilitator superfamily domain containing 2A ISS ARUK-UCL GO_REF:0000024 NCBI chr 1:39,955,145...39,969,956
Ensembl chr 1:39,955,112...39,969,968
JBrowse link
G MTTP microsomal triglyceride transfer protein TAS Reactome Reactome:R-HSA-8866423 NCBI chr 4:99,564,130...99,623,997
Ensembl chr 4:99,563,761...99,623,999
JBrowse link
G P4HB prolyl 4-hydroxylase subunit beta TAS Reactome Reactome:R-HSA-8866423 NCBI chr17:81,843,159...81,860,535
Ensembl chr17:81,843,161...81,860,624
JBrowse link
G SOAT1 sterol O-acyltransferase 1 IMP (PMID:15308631) BHF-UCL PMID:15308631 NCBI chr 1:179,293,719...179,358,680
Ensembl chr 1:179,293,714...179,358,680
JBrowse link
G SOAT2 sterol O-acyltransferase 2 IMP (PMID:15308631) BHF-UCL PMID:15308631 NCBI chr12:53,103,486...53,124,535
Ensembl chr12:53,103,486...53,124,535
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18670
    cellular process 17686
      cellular component organization or biogenesis 7146
        cellular component organization 6956
          cellular component assembly 3236
            protein-containing complex assembly 1788
              protein-lipid complex assembly 36
                lipid antigen assembly with MHC class Ib protein complex 0
                lipid tube assembly + 4
                plasma lipoprotein particle assembly + 32
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.