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ONTOLOGY REPORT - ANNOTATIONS


Term:tRNA threonylcarbamoyladenosine metabolic process
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Accession:GO:0070525 term browser browse the term
Definition:The chemical reactions and pathways involving tRNA threonylcarbamoyladenosine, a modified nucleoside found in some tRNA molecules.
Synonyms:exact_synonym: t6A metabolic process;   t6A metabolism;   threonylcarbamoyladenosine metabolism


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tRNA threonylcarbamoyladenosine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctag2 cancer/testis antigen 2 JBrowse link X 148,421,627 148,422,921 RGD:13792537
G Lage3 L antigen family, member 3 JBrowse link X 156,355,376 156,356,799 RGD:13792537
G LOC102552182 L antigen family member 3-like JBrowse link X 156,152,984 156,155,156 RGD:13792537
G LOC685619 similar to TP53-regulating kinase (p53-related protein kinase) (Nori-2) JBrowse link 3 162,164,354 162,168,272 RGD:13792537
G LOC690348 similar to ESO3 protein JBrowse link X 156,227,459 156,230,351 RGD:13792537
G Tp53rk TP53 regulating kinase JBrowse link 3 163,552,166 163,555,925 RGD:13792537
mitochondrial tRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 JBrowse link X 21,696,796 21,699,241 RGD:1600115
RGD:1624291
G Trmt5 tRNA methyltransferase 5 JBrowse link 6 96,164,579 96,171,680 RGD:1624291
RGD:13792537
mitochondrial tRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 JBrowse link 3 149,835,953 149,870,429 RGD:1624291
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mto1 mitochondrial tRNA translation optimization 1 JBrowse link 8 85,807,703 85,832,263 RGD:1624291
RGD:13792537
tRNA threonylcarbamoyladenosine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Osgep O-sialoglycoprotein endopeptidase JBrowse link 15 27,842,447 27,849,866 RGD:1600115
RGD:1624291
G Osgepl1 O-sialoglycoprotein endopeptidase-like 1 JBrowse link 9 53,084,042 53,098,029 RGD:1600115
G Tprkb Tp53rk binding protein JBrowse link 4 117,589,527 117,604,481 RGD:1600115
RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19676
    metabolic process 11952
      organic substance metabolic process 11358
        macromolecule metabolic process 9814
          nucleic acid metabolic process 4821
            RNA metabolic process 4321
              tRNA threonylcarbamoyladenosine metabolic process 13
                mitochondrial tRNA modification + 4
                tRNA threonylcarbamoyladenosine modification + 3
Path 2
Term Annotations click to browse term
  biological_process 19676
    metabolic process 11952
      cellular metabolic process 10780
        cellular aromatic compound metabolic process 5534
          nucleobase-containing compound metabolic process 5310
            nucleic acid metabolic process 4821
              RNA metabolic process 4321
                tRNA threonylcarbamoyladenosine metabolic process 13
                  mitochondrial tRNA modification + 4
                  tRNA threonylcarbamoyladenosine modification + 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.