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ONTOLOGY REPORT - ANNOTATIONS


Term:vitamin D3 metabolic process
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Accession:GO:0070640 term browser browse the term
Definition:The chemical reactions and pathways involving vitamin D3, (3S,5Z,7E)-9,10-secocholesta-5,7,10(19)-trien-3-ol.
Synonyms:exact_synonym: calciol metabolic process;   cholecalciferol metabolic process;   vitamin D3 metabolism


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vitamin D3 metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 Fibroblast growth factor receptor 1 ISO
IEA
MGI:MGI:95525 (MGI:MGI:5548021|PMID:24259513)
GO_REF:0000107
RGD
Ensembl
PMID:24259513 GO_REF:0000107, MGI:MGI:5548021 NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
JBrowse link
G Fgfr4 fibroblast growth factor receptor 4 ISO MGI:MGI:95522 (MGI:MGI:5548021|PMID:24259513) RGD PMID:24259513 MGI:MGI:5548021 NCBI chr17:9,990,072...10,004,339
Ensembl chr17:9,990,078...10,004,321
JBrowse link
calcitriol biosynthetic process from calciol term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp27a1 cytochrome P450, family 27, subfamily a, polypeptide 1 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:15465040)
Ensembl
RGD
PMID:15465040, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 9:81,968,285...81,998,213
Ensembl chr 9:81,968,332...81,998,169
JBrowse link
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 ISO
IBA
(PMID:15795327), (PMID:16549446), (PMID:17023519), (PMID:22862690), (PMID:9415400)
PMID:21873635
(MGI:MGI:3590419|PMID:15972816)
RGD PMID:9415400, PMID:15795327, PMID:15972816, PMID:16549446, PMID:17023519, PMID:22862690, PMID:21873635 MGI:MGI:3590419, RGD:13792537 NCBI chr 7:70,333,150...70,340,006
Ensembl chr 7:70,335,061...70,340,005
JBrowse link
G Cyp2r1 cytochrome P450, family 2, subfamily r, polypeptide 1 ISO (PMID:15465040), (PMID:18511070) RGD PMID:15465040, PMID:18511070 NCBI chr 1:184,060,521...184,106,604
Ensembl chr 1:184,093,920...184,106,200
JBrowse link
G LOC100909462 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      small molecule metabolic process 1870
        alcohol metabolic process 358
          secondary alcohol metabolic process 149
            vitamin D3 metabolic process 6
              calcitriol biosynthetic process from calciol 4
              vitamin D3 biosynthetic process 0
              vitamin D3 catabolic process 0
Path 2
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      small molecule metabolic process 1870
        vitamin metabolic process 81
          fat-soluble vitamin metabolic process 39
            vitamin D metabolic process 18
              vitamin D3 metabolic process 6
                calcitriol biosynthetic process from calciol 4
                vitamin D3 biosynthetic process 0
                vitamin D3 catabolic process 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.