Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:histone H3 deacetylation
go back to main search page
Accession:GO:0070932 term browser browse the term
Definition:The modification of histone H3 by the removal of one or more acetyl groups.


show annotations for term's descendants           Sort by:
 
histone H3 deacetylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn3 ataxin 3 IEP RGD PMID:17079677 RGD:5688291 NCBI chr 6:125,817,420...125,853,461
Ensembl chr 6:125,819,640...125,853,461
JBrowse link
G Elk4 ETS transcription factor ELK4 ISO (PMID:22722849) RGD PMID:22722849 NCBI chr13:48,788,262...48,813,267
Ensembl chr13:48,790,509...48,813,260
JBrowse link
G Hdac1 histone deacetylase 1 IMP
IBA
ISO
PMID:21873635
(MGI:MGI:5567917|PMID:15226430)
(PMID:12590135)
RGD PMID:12590135, PMID:15226430, PMID:19765194, PMID:21873635 MGI:MGI:5567917, RGD:2316171, RGD:13792537 NCBI chr 5:147,716,664...147,743,723
Ensembl chr 5:147,716,664...147,743,723
JBrowse link
G Hdac1l histone deacetylase 1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:84,893,145...84,894,599
Ensembl chr 9:84,893,145...84,894,599
JBrowse link
G Hdac2 histone deacetylase 2 IMP
IBA
ISO
PMID:21873635
(MGI:MGI:5567917|PMID:15226430)
RGD PMID:15226430, PMID:24441681, PMID:21873635 MGI:MGI:5567917, RGD:9590255, RGD:13792537 NCBI chr20:43,084,870...43,108,198
Ensembl chr20:43,084,870...43,108,198
JBrowse link
G Hdac3 histone deacetylase 3 IEP
IBA
IEA
PMID:21873635
GO_REF:0000108
GOC PMID:17079677, PMID:21873635 GO_REF:0000108, RGD:5688291, RGD:13792537 NCBI chr18:31,073,057...31,094,347
Ensembl chr18:31,073,058...31,094,303
JBrowse link
G Hdac4 histone deacetylase 4 ISO (PMID:12590135) RGD PMID:12590135 NCBI chr 9:99,052,945...99,299,715
Ensembl chr 9:99,057,089...99,299,715
JBrowse link
G Hdac5 histone deacetylase 5 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:90,140,183...90,169,853
Ensembl chr10:90,140,183...90,151,042
JBrowse link
G Hdac7 histone deacetylase 7 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:139,280,396...139,319,108
Ensembl chr 7:139,281,187...139,318,455
JBrowse link
G Hdac8 histone deacetylase 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:72,163,777...72,370,058
Ensembl chr  X:72,163,777...72,370,044
JBrowse link
G Hdac9 histone deacetylase 9 ISO (PMID:12590135) RGD PMID:12590135 NCBI chr 6:53,487,367...54,358,694
Ensembl chr 6:53,488,883...54,059,119
JBrowse link
G Per1 period circadian regulator 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5014424|PMID:21680841)
Ensembl
UniProt
RGD
PMID:21680841 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5014424 NCBI chr10:55,681,761...55,696,557
Ensembl chr10:55,687,050...55,695,994
JBrowse link
G Per2 period circadian regulator 2 ISO
ISS
(MGI:MGI:5014424|PMID:21680841)
GO_REF:0000024
RGD
UniProt
PMID:21680841 GO_REF:0000024, MGI:MGI:5014424 NCBI chr 9:98,555,154...98,597,362
Ensembl chr 9:98,555,169...98,597,359
JBrowse link
G Sfpq splicing factor proline and glutamine rich ISO (MGI:MGI:5014424|PMID:21680841) RGD PMID:21680841 MGI:MGI:5014424 NCBI chr 5:145,079,803...145,088,517
Ensembl chr 5:145,079,803...145,088,498
JBrowse link
G Sirt1 sirtuin 1 IMP
IBA
ISO
PMID:21873635
(PMID:17505061), (PMID:20027304)
RGD PMID:17505061, PMID:20027304, PMID:20089851, PMID:21873635, PMID:21873635 RGD:2316169, RGD:13792537, RGD:13792537 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
G Sirt2 sirtuin 2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5502462|PMID:23908241)
(PMID:23908241)
Ensembl
UniProt
RGD
PMID:23908241 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5502462 NCBI chr 1:86,948,866...86,971,954
Ensembl chr 1:86,948,918...86,971,952
JBrowse link
G Sirt3 sirtuin 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:213,613,502...213,636,061
Ensembl chr 1:213,613,513...213,635,546
JBrowse link
G Sirt6 sirtuin 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:10,937,622...10,943,048
Ensembl chr 7:10,937,599...10,943,063
JBrowse link
G Sirt7 sirtuin 7 ISS
ISO
IBA
GO_REF:0000024
(MGI:MGI:5789069|PMID:27225932), (MGI:MGI:6377981|PMID:31226208), (MGI:MGI:6378020|PMID:31256246)
PMID:21873635
(PMID:22722849), (PMID:26907567), (PMID:28655758), (PMID:30420520), (PMID:30653310)
UniProt
RGD
PMID:22722849, PMID:26907567, PMID:27225932, PMID:28655758, PMID:30420520, PMID:30653310, PMID:31226208, PMID:31256246, PMID:21873635 GO_REF:0000024, MGI:MGI:5789069, MGI:MGI:6377981, MGI:MGI:6378020, RGD:13792537 NCBI chr10:109,796,046...109,802,821
Ensembl chr10:109,796,020...109,802,739
JBrowse link
G Smarcad1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1` ISO
ISS
(PMID:21549307)
GO_REF:0000024
RGD
UniProt
PMID:21549307 GO_REF:0000024 NCBI chr 4:95,884,020...95,945,248
Ensembl chr 4:95,884,743...95,945,248
JBrowse link
histone H3-K9 deacetylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt1 sirtuin 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
G Sirt6 sirtuin 6 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:10,937,622...10,943,048
Ensembl chr 7:10,937,599...10,943,063
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    cellular process 18788
      cellular component organization or biogenesis 6766
        cellular component organization 6510
          chromatin organization 847
            covalent chromatin modification 513
              histone modification 498
                histone deacetylation 87
                  histone H3 deacetylation 20
                    histone H3-K4 deacetylation 0
                    histone H3-K56 deacetylation 0
                    histone H3-K9 deacetylation 2
Path 2
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      organic substance metabolic process 11636
        macromolecule metabolic process 10081
          macromolecule modification 4142
            protein modification process 3937
              cellular protein modification process 3937
                protein deacylation 121
                  protein deacetylation 109
                    histone deacetylation 87
                      histone H3 deacetylation 20
                        histone H3-K4 deacetylation 0
                        histone H3-K56 deacetylation 0
                        histone H3-K9 deacetylation 2
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.