ONTOLOGY REPORT - ANNOTATIONS


Term:nuclear retention of pre-mRNA at the site of transcription
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Accession:GO:0071033 term browser browse the term
Definition:The process involved in retention of aberrant or improperly formed mRNAs, e.g. those that are incorrectly or incompletely spliced or that have incorrectly formed 3'-ends, within the nucleus at the site of transcription.


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nuclear retention of pre-mRNA at the site of transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pcid2 PCI domain containing 2 JBrowse link 16 81,757,582 81,783,047 RGD:13792537
nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exosc2 exosome component 2 JBrowse link 3 10,151,734 10,161,997 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:13792537
nuclear retention of unspliced pre-mRNA at the site of transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:1624291
RGD:1600115
G Prpf18 pre-mRNA processing factor 18 JBrowse link 17 77,601,914 77,632,507 RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17895
    localization 5951
      macromolecule localization 2917
        RNA localization 155
          intracellular mRNA localization 14
            nuclear retention of pre-mRNA at the site of transcription 5
              nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription 2
              nuclear retention of unspliced pre-mRNA at the site of transcription 2
Path 2
Term Annotations click to browse term
  biological_process 17895
    metabolic process 10649
      cellular metabolic process 9739
        cellular aromatic compound metabolic process 5076
          nucleobase-containing compound metabolic process 4872
            nucleic acid metabolic process 4428
              RNA metabolic process 3960
                RNA catabolic process 236
                  mRNA catabolic process 206
                    nuclear-transcribed mRNA catabolic process 107
                      nuclear mRNA surveillance 13
                        nuclear retention of pre-mRNA at the site of transcription 5
                          nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription 2
                          nuclear retention of unspliced pre-mRNA at the site of transcription 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.