ONTOLOGY REPORT - ANNOTATIONS


Term:ribonucleoprotein complex localization
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Accession:GO:0071166 term browser browse the term
Definition:Any process in which a ribonucleoprotein complex is transported to, or maintained in, a specific location within a cell.
Synonyms:exact_synonym: RNP localization;   cellular ribonucleoprotein complex localization;   establishment and maintenance of ribonucleoprotein complex localization;   ribonucleoprotein complex localisation


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ribonucleoprotein complex localization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Prpf31 pre-mRNA processing factor 31 JBrowse link 1 64,150,786 64,162,461 RGD:1624291
RGD:1600115
mRNA export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh5 alkB homolog 5, RNA demethylase JBrowse link 10 46,906,314 46,927,759 RGD:1624291
RGD:13792537
RGD:1600115
G Alyref Aly/REF export factor JBrowse link 10 109,768,593 109,774,639 RGD:1624291
G Chtop chromatin target of PRMT1 JBrowse link 2 189,887,850 189,900,079 RGD:1624291
G Da2-19 uncharacterized LOC302729 JBrowse link X 48,196,789 48,213,506 RGD:1600115
RGD:13792537
G Ddx25 DEAD-box helicase 25 JBrowse link 8 36,744,686 36,760,720 RGD:1600115
RGD:1624291
G Ddx39a DExD-box helicase 39A JBrowse link 19 24,846,530 24,854,886 RGD:1624291
RGD:1600115
G Ddx39b DExD-box helicase 39B JBrowse link 20 4,806,103 4,818,600 RGD:1624291
RGD:1600115
G Eif5a eukaryotic translation initiation factor 5A JBrowse link 10 56,527,075 56,531,615 RGD:1624291
G Fyttd1 forty-two-three domain containing 1 JBrowse link 11 71,113,931 71,136,694 RGD:1600115
RGD:13792537
RGD:1624291
G Gle1 GLE1 RNA export mediator JBrowse link 3 8,498,098 8,530,218 RGD:13792537
G Hhex hematopoietically expressed homeobox JBrowse link 1 256,101,994 256,107,581 RGD:1624291
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 4 81,237,496 81,241,281 RGD:9685424
RGD:1624291
RGD:1600115
RGD:9685477
G LOC679894 similar to THO complex subunit 2 (Tho2) JBrowse link 14 6,561,962 6,601,906 RGD:13792537
G Mcm3ap minichromosome maintenance complex component 3 associated protein JBrowse link 20 12,879,304 12,917,069 RGD:13792537
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link 5 61,734,118 61,767,098 RGD:1600115
RGD:13792537
RGD:1624291
G Nup107 nucleoporin 107 JBrowse link 7 60,781,724 60,825,225 RGD:1624291
RGD:1600115
RGD:13792537
RGD:8553287
G Nup133 nucleoporin 133 JBrowse link 19 56,681,965 56,731,404 RGD:1624291
RGD:1600115
G Nup155 nucleoporin 155 JBrowse link 2 57,206,665 57,258,242 RGD:1624291
RGD:1600115
G Nup160 nucleoporin 160 JBrowse link 3 79,496,239 79,562,163 RGD:1624291
RGD:1600115
G Nup214 nucleoporin 214 JBrowse link 3
3
9,227,869
10,993,584
9,236,878
11,070,638
RGD:1624291
RGD:1600115
G Nup85 nucleoporin 85 JBrowse link 10 104,118,999 104,137,258 RGD:13792537
G Nup88 nucleoporin 88 JBrowse link 10 57,581,828 57,606,171 RGD:13792537
G Nxf1 nuclear RNA export factor 1 JBrowse link 1 224,957,535 224,970,728 RGD:1600115
RGD:1624291
G Nxf3 nuclear RNA export factor 3 JBrowse link X 106,562,957 106,587,487 RGD:1624291
G Nxf7 nuclear RNA export factor 7 JBrowse link X 106,049,075 106,066,334 RGD:1624291
G Poldip3 DNA polymerase delta interacting protein 3 JBrowse link 7 123,992,167 124,020,596 RGD:1600115
G Rae1 ribonucleic acid export 1 JBrowse link 3 171,012,984 171,030,392 RGD:1600115
G Rbm15b RNA binding motif protein 15B JBrowse link 8 115,618,242 115,623,068 RGD:1600115
RGD:1624291
G Sarnp SAP domain containing ribonucleoprotein JBrowse link 7 3,246,220 3,300,467 RGD:1624291
RGD:1600115
G Sem1 SEM1, 26S proteasome complex subunit JBrowse link 4 32,067,444 32,087,600 RGD:1600115
G Srsf3 serine and arginine rich splicing factor 3 JBrowse link 20 6,288,285 6,298,218 RGD:1600115
RGD:1624291
G Thoc1 THO complex 1 JBrowse link 18 1,142,540 1,177,084 RGD:1624291
G Thoc2 THO complex 2 JBrowse link X 128,153,824 128,268,327 RGD:1624291
RGD:13792537
G Thoc3 THO complex 3 JBrowse link 17 10,676,943 10,686,134 RGD:1624291
RGD:13792537
G Thoc5 THO complex 5 JBrowse link 14 85,138,219 85,171,729 RGD:1624291
RGD:13792537
G Thoc6 THO complex 6 JBrowse link 10 12,989,135 12,994,495 RGD:1624291
RGD:1600115
G Thoc7 THO complex 7 JBrowse link 15 12,569,235 12,584,101 RGD:1624291
RGD:13792537
G Ythdc1 YTH domain containing 1 JBrowse link 14 22,971,834 23,002,326 RGD:1600115
RGD:1624291
mRNA export from nucleus in response to heat stress term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Polr2d RNA polymerase II subunit D JBrowse link 18 24,570,762 24,577,894 RGD:13792537
G Tpr translocated promoter region, nuclear basket protein JBrowse link 13 67,611,685 67,672,833 RGD:1624291
RGD:1600115
poly(A)+ mRNA export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eny2 ENY2, transcription and export complex 2 subunit JBrowse link 7 83,348,656 83,358,430 RGD:13792537
RGD:1624291
G Gle1 GLE1 RNA export mediator JBrowse link 3 8,498,098 8,530,218 RGD:1600115
G Hhex hematopoietically expressed homeobox JBrowse link 1 256,101,994 256,107,581 RGD:1624291
RGD:1600115
G LOC500827 similar to hypothetical protein FLJ35821 JBrowse link 7 40,316,165 40,350,482 RGD:13792537
G Mcm3ap minichromosome maintenance complex component 3 associated protein JBrowse link 20 12,879,304 12,917,069 RGD:13792537
RGD:1624291
G Nup93 nucleoporin 93 JBrowse link 19 11,159,769 11,263,980 RGD:13792537
G Nxf1 nuclear RNA export factor 1 JBrowse link 1 224,957,535 224,970,728 RGD:1624291
RGD:13792537
RGD:1600115
G Nxf2 nuclear RNA export factor 2 JBrowse link X 105,772,718 105,793,324 RGD:13792537
G Nxf3 nuclear RNA export factor 3 JBrowse link X 106,562,957 106,587,487 RGD:1624291
RGD:13792537
G Nxf7 nuclear RNA export factor 7 JBrowse link X 106,049,075 106,066,334 RGD:1624291
RGD:13792537
G Pabpn1 poly(A) binding protein, nuclear 1 JBrowse link 15 33,555,640 33,560,251 RGD:1624291
RGD:1600115
G Pcid2 PCI domain containing 2 JBrowse link 16 81,757,582 81,783,047 RGD:13792537
G Poldip3 DNA polymerase delta interacting protein 3 JBrowse link 7 123,992,167 124,020,596 RGD:1624291
RGD:1600115
G Thoc2 THO complex 2 JBrowse link X 128,153,824 128,268,327 RGD:1624291
G Zc3h11a zinc finger CCCH-type containing 11A JBrowse link 13 50,196,042 50,234,862 RGD:1624291
RGD:13792537
G Zc3h3 zinc finger CCCH type containing 3 JBrowse link 7 116,787,762 116,872,536 RGD:13792537
positive regulation of ribosomal small subunit export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Riok2 RIO kinase 2 JBrowse link 1 59,130,008 59,146,457 RGD:1624291
RGD:1600115
regulation of mRNA export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akap8l A-kinase anchoring protein 8 like JBrowse link 7 14,340,168 14,369,835 RGD:1624291
RGD:1600115
G Iws1 interacts with SUPT6H, CTD assembly factor 1 JBrowse link 18 24,849,508 24,891,339 RGD:1600115
RGD:13792537
RGD:1624291
G Setd2 SET domain containing 2, histone lysine methyltransferase JBrowse link 8 118,802,478 118,888,224 RGD:1624291
RGD:1600115
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor JBrowse link 10 65,470,470 65,507,581 RGD:1624291
RGD:1600115
G Thoc2 THO complex 2 JBrowse link X 128,153,824 128,268,327 RGD:1624291
RGD:1600115
G Thoc5 THO complex 5 JBrowse link 14 85,138,219 85,171,729 RGD:1624291
G Tpr translocated promoter region, nuclear basket protein JBrowse link 13 67,611,685 67,672,833 RGD:1624291
ribosomal large subunit export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nmd3 NMD3 ribosome export adaptor JBrowse link 2 166,402,838 166,428,331 RGD:1624291
RGD:13792537
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:1624291
RGD:13792537
G Nup88 nucleoporin 88 JBrowse link 10 57,581,828 57,606,171 RGD:13792537
G Ran RAN, member RAS oncogene family JBrowse link 12 31,319,556 31,324,105 RGD:1624291
RGD:1600115
G Rrs1 ribosome biogenesis regulator 1 homolog JBrowse link 5 9,430,710 9,432,343 RGD:13792537
G Sdad1 SDA1 domain containing 1 JBrowse link 14 17,247,381 17,274,228 RGD:1600115
G Xpo1 exportin 1 JBrowse link 14 108,007,421 108,049,088 RGD:1624291
RGD:13792537
G Zfp593 zinc finger protein 593 JBrowse link 5 152,462,522 152,464,850 RGD:13792537
ribosomal small subunit export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ltv1 LTV1 ribosome biogenesis factor JBrowse link 1 7,323,043 7,335,766 RGD:13792537
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:1624291
RGD:13792537
G Nup88 nucleoporin 88 JBrowse link 10 57,581,828 57,606,171 RGD:13792537
G Ran RAN, member RAS oncogene family JBrowse link 12 31,319,556 31,324,105 RGD:1624291
RGD:1600115
G Rps15 ribosomal protein S15 JBrowse link 7 12,282,134 12,283,573 RGD:1624291
G Xpo1 exportin 1 JBrowse link 14 108,007,421 108,049,088 RGD:1624291
RGD:13792537
ribosomal subunit export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abce1 ATP binding cassette subfamily E member 1 JBrowse link 19 31,867,960 31,892,863 RGD:13792537
G Eif6 eukaryotic translation initiation factor 6 JBrowse link 3 151,356,867 151,363,201 RGD:1600115
RGD:13792537
G Xpo1 exportin 1 JBrowse link 14 108,007,421 108,049,088 RGD:1624291
rRNA export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:1624291
RGD:13792537
G Rpsa ribosomal protein SA JBrowse link 8 128,806,053 128,809,987 RGD:13792537
G Tsc1 TSC complex subunit 1 JBrowse link 3 7,219,955 7,269,063 RGD:1624291
RGD:1600115
tRNA export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nol6 nucleolar protein 6 JBrowse link 5 57,444,448 57,473,803 RGD:13792537
G Ssb small RNA binding exonuclease protection factor La JBrowse link 3 56,092,425 56,102,008 RGD:1624291
G Xpot exportin for tRNA JBrowse link 7 63,688,646 63,728,988 RGD:1624291
tRNA re-export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Xpot exportin for tRNA JBrowse link 7 63,688,646 63,728,988 RGD:13792537

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Term Annotations click to browse term
  biological_process 17896
    localization 5958
      cellular localization 2645
        ribonucleoprotein complex localization 70
          negative regulation of ribonucleoprotein complex localization + 0
          positive regulation of ribonucleoprotein complex localization + 1
          regulation of ribonucleoprotein complex localization + 8
          ribonucleoprotein complex export from nucleus + 69
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.