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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular response to alkaloid
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Accession:GO:0071312 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkaloid stimulus. Alkaloids are a large group of nitrogenous substances found in naturally in plants, many of which have extracts that are pharmacologically active.


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cellular response to alkaloid term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb1a ATP binding cassette subfamily B member 1A JBrowse link 4 22,339,829 22,517,642 RGD:8657336
G Bcl2l1 Bcl2-like 1 JBrowse link 3 148,259,594 148,314,191 RGD:1624291
G Ddc dopa decarboxylase JBrowse link 14 91,905,919 91,996,816 RGD:5129084
G Htr1b 5-hydroxytryptamine receptor 1B JBrowse link 8 89,113,984 89,130,830 RGD:1624291
RGD:1600115
G Icam1 intercellular adhesion molecule 1 JBrowse link 8 22,035,287 22,047,049 RGD:4145373
G Mdm2 MDM2 proto-oncogene JBrowse link 7 60,719,060 60,743,618 RGD:2317366
G Mmp1 matrix metallopeptidase 1 JBrowse link 8 5,703,206 5,723,593 RGD:7207365
G Rad51 RAD51 recombinase JBrowse link 3 110,918,240 110,942,920 RGD:1624291
G Star steroidogenic acute regulatory protein JBrowse link 16 71,036,204 71,040,847 RGD:4145624
G Th tyrosine hydroxylase JBrowse link 1 216,073,034 216,080,287 RGD:5129084
G Trpv1 transient receptor potential cation channel, subfamily V, member 1 JBrowse link 10 59,799,123 59,824,208 RGD:8553505
cellular response to caffeine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cacna1s calcium voltage-gated channel subunit alpha1 S JBrowse link 13 52,889,570 52,964,558 RGD:1600115
G Casq2 calsequestrin 2 JBrowse link 2 204,512,361 204,568,643 RGD:1624291
RGD:1600115
G Chek1 checkpoint kinase 1 JBrowse link 8 39,181,162 39,201,588 RGD:2316109
G Gstm2 glutathione S-transferase mu 2 JBrowse link 2 210,778,041 210,782,807 RGD:1624291
G Ppargc1a PPARG coactivator 1 alpha JBrowse link 14 63,095,291 63,190,688 RGD:10059651
G Ryr1 ryanodine receptor 1 JBrowse link 1 87,959,596 88,066,252 RGD:1600115
RGD:1624291
G Ryr2 ryanodine receptor 2 JBrowse link 17 65,533,998 65,955,606 RGD:1624291
RGD:1600115
G Selenon selenoprotein N JBrowse link 5 152,748,497 152,765,489 RGD:1624291
RGD:1600115
G Slc8a1 solute carrier family 8 member A1 JBrowse link 6 4,244,076 4,564,262 RGD:1624291
G Tmem38a transmembrane protein 38a JBrowse link 16 18,960,197 18,974,942 RGD:1624291
RGD:1600115
G Tmem38b transmembrane protein 38B JBrowse link 5 70,639,156 70,675,055 RGD:1624291
RGD:1600115
G Trpa1 transient receptor potential cation channel, subfamily A, member 1 JBrowse link 5 3,783,247 3,836,485 RGD:10043374
cellular response to camptothecin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Blm BLM RecQ like helicase JBrowse link 1 142,246,773 142,332,616 RGD:1624291
RGD:1600115
G Fancb FA complementation group B JBrowse link X 31,124,018 31,140,790 RGD:1624291
G Rad51 RAD51 recombinase JBrowse link 3 110,918,240 110,942,920 RGD:1624291
RGD:1600115
G Recql5 RecQ like helicase 5 JBrowse link 10 104,443,735 104,482,889 RGD:1624291
RGD:1600115
G Spidr scaffold protein involved in DNA repair JBrowse link 11 89,009,931 89,260,361 RGD:1624291
RGD:1600115
cellular response to cocaine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccna2 cyclin A2 JBrowse link 2 123,274,727 123,282,266 RGD:10054470
G Crh corticotropin releasing hormone JBrowse link 2 104,459,999 104,461,863 RGD:8553798
G Crhbp corticotropin releasing hormone binding protein JBrowse link 2 25,141,471 25,153,334 RGD:8553798
G Ehmt2 euchromatic histone lysine methyltransferase 2 JBrowse link 20 4,576,033 4,592,980 RGD:1624291
RGD:1600115
cellular response to isoquinoline alkaloid term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Egr1 early growth response 1 JBrowse link 18 27,657,903 27,660,101 RGD:5131909
G Mecp2 methyl CpG binding protein 2 JBrowse link X 156,650,389 156,713,813 RGD:12790719
cellular response to morphine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adcy8 adenylate cyclase 8 JBrowse link 7 105,353,883 105,593,372 RGD:1600115
RGD:13825193
RGD:1624291
G Aif1 allograft inflammatory factor 1 JBrowse link 20 5,161,350 5,167,176 RGD:2313012
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:11557986
G Ccl5 C-C motif chemokine ligand 5 JBrowse link 10 70,739,764 70,744,303 RGD:4889899
G Kcnj6 potassium inwardly-rectifying channel, subfamily J, member 6 JBrowse link 11 35,011,007 35,262,362 RGD:6483056
G Oprm1 opioid receptor, mu 1 JBrowse link 1 43,454,803 43,704,948 RGD:1600115
G Ppp1r9b protein phosphatase 1, regulatory subunit 9B JBrowse link 10 82,800,704 82,816,735 RGD:1624291
RGD:1600115
G RT1-Bb RT1 class II, locus Bb JBrowse link 20 4,043,726 4,049,367 RGD:7488923
cellular response to staurosporine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Casp3 caspase 3 JBrowse link 16 48,845,011 48,863,249 RGD:1624291
RGD:1600115
G Casp6 caspase 6 JBrowse link 2 235,341,326 235,353,715 RGD:1624291
G Casp7 caspase 7 JBrowse link 1 277,190,557 277,242,779 RGD:1624291
G Plau plasminogen activator, urokinase JBrowse link 15 3,644,296 3,650,765 RGD:7241807
G Slc34a1 solute carrier family 34 member 1 JBrowse link 17 9,747,766 9,762,739 RGD:7243183

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18166
    response to stimulus 9928
      response to endogenous stimulus 2083
        cellular response to endogenous stimulus 1633
          cellular response to organonitrogen compound 832
            cellular response to alkaloid 46
              cellular response to caffeine + 12
              cellular response to camptothecin 5
              cellular response to cocaine 4
              cellular response to isoquinoline alkaloid + 10
              cellular response to staurosporine 5
              cellular response to tropane 0
Path 2
Term Annotations click to browse term
  biological_process 18166
    response to stimulus 9928
      response to chemical 6195
        response to organic substance 3747
          response to organonitrogen compound 1420
            response to alkaloid 183
              cellular response to alkaloid 46
                cellular response to caffeine + 12
                cellular response to camptothecin 5
                cellular response to cocaine 4
                cellular response to isoquinoline alkaloid + 10
                cellular response to staurosporine 5
                cellular response to tropane 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.