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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular response to light stimulus
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Accession:GO:0071482 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.


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cellular response to light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:MGI:3696487|PMID:17234588) RGD PMID:17234588 MGI:MGI:3696487 NCBI chr13:56,270,519...56,462,893
Ensembl chr13:56,270,781...56,462,834
JBrowse link
G Gpr88 G-protein coupled receptor 88 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:219,258,346...219,263,819
Ensembl chr 2:219,258,347...219,262,901
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha IEP RGD PMID:17475674 RGD:9068879 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Kcne1 potassium voltage-gated channel subfamily E regulatory subunit 1 IEP RGD PMID:24202060 RGD:12910722 NCBI chr11:32,498,260...32,511,202
Ensembl chr11:32,498,261...32,508,420
JBrowse link
G Opn1mw opsin 1, medium wave sensitive IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:156,569,683...156,589,907
Ensembl chr  X:156,569,683...156,589,907
JBrowse link
G Opn1sw opsin 1, short wave sensitive IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:56,653,840...56,656,980
Ensembl chr 4:56,653,844...56,656,980
JBrowse link
G Opn3 opsin 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:93,716,481...93,746,994
Ensembl chr13:93,716,481...93,746,994
JBrowse link
G Opn4 opsin 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:10,943,353...10,966,602
Ensembl chr16:10,943,341...10,952,549
JBrowse link
G Opn5 opsin 5 ISO
IBA
(MGI:MGI:6376341|PMID:31607531)
PMID:21873635
RGD PMID:31607531, PMID:21873635 MGI:MGI:6376341, RGD:13792537 NCBI chr 9:21,045,457...21,092,517
Ensembl chr 9:21,045,457...21,093,172
JBrowse link
G Rgr retinal G protein coupled receptor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:14,286,323...14,300,972
Ensembl chr16:14,286,323...14,300,951
JBrowse link
G Rho rhodopsin ISO
IBA
IEA
(MGI:MGI:4849309|PMID:21052544)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:21052544, PMID:21873635 GO_REF:0000107, MGI:MGI:4849309, RGD:13792537 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
JBrowse link
G Rp1 RP1, axonemal microtubule associated ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 5:15,005,028...15,060,508
Ensembl chr 5:15,043,955...15,060,508
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO MGI:MGI:2386674 (MGI:MGI:1354839|PMID:10725384) RGD PMID:10725384 MGI:MGI:1354839 NCBI chr  X:14,271,012...14,331,745
Ensembl chr  X:14,271,017...14,331,486
JBrowse link
G Rrh retinal pigment epithelium derived rhodopsin homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:235,237,422...235,250,474
Ensembl chr 2:235,237,414...235,249,575
JBrowse link
G Trpm1 transient receptor potential cation channel, subfamily M, member 1 IEA
ISO
GO_REF:0000107
MGI:MGI:4421441 (MGI:MGI:4398796|PMID:19861548), (MGI:MGI:4420740|PMID:19966281), (MGI:MGI:4849309|PMID:21052544)
(PMID:19896109)
Ensembl
RGD
PMID:19861548, PMID:19896109, PMID:19966281, PMID:21052544 GO_REF:0000107, MGI:MGI:4398796, MGI:MGI:4420740, MGI:MGI:4849309 NCBI chr 1:124,983,391...125,101,759
Ensembl chr 1:124,983,452...125,099,573
JBrowse link
adaptation of rhodopsin mediated signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rdh11 retinol dehydrogenase 11 ISO MGI:MGI:3586379 (MGI:MGI:3584215|PMID:15790565) RGD PMID:15790565 MGI:MGI:3584215 NCBI chr 6:102,356,498...102,372,618
Ensembl chr 6:102,356,492...102,372,611
JBrowse link
G Rs1 retinoschisin 1 ISO MGI:MGI:3056058 (MGI:MGI:3055638|PMID:15326152) RGD PMID:15326152 MGI:MGI:3055638 NCBI chr  X:35,749,957...35,777,243
Ensembl chr  X:35,749,957...35,777,243
JBrowse link
cellular response to high light intensity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt2 AKT serine/threonine kinase 2 ISO
IEA
MGI:MGI:2158456 (MGI:MGI:3695811|PMID:17202487)
GO_REF:0000107
RGD
Ensembl
PMID:17202487 GO_REF:0000107, MGI:MGI:3695811 NCBI chr 1:84,400,939...84,451,223
Ensembl chr 1:84,411,726...84,450,162
JBrowse link
cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 ISO
ISS
(PMID:19424603)
GO_REF:0000024
RGD
UniProt
PMID:19424603 GO_REF:0000024 NCBI chr 4:85,551,503...85,563,683
Ensembl chr 4:85,551,502...85,569,360
JBrowse link
G Atf4 activating transcription factor 4 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 7:121,480,723...121,482,781
Ensembl chr 7:121,480,723...121,482,772
JBrowse link
G Atr ATR serine/threonine kinase ISO (PMID:9925639) RGD PMID:9925639 NCBI chr 8:103,673,578...103,770,886
Ensembl chr 8:103,673,411...103,770,947
JBrowse link
G Aurkb aurora kinase B ISO
ISS
(PMID:20959462)
GO_REF:0000024
RGD
UniProt
PMID:20959462 GO_REF:0000024 NCBI chr10:55,625,860...55,632,399
Ensembl chr10:55,626,741...55,634,991
JBrowse link
G Bak1 BCL2-antagonist/killer 1 ISO (PMID:15901672)
(MGI:MGI:3689797|PMID:15901672)
RGD PMID:15901672 MGI:MGI:3689797 NCBI chr20:5,609,620...5,618,899
Ensembl chr20:5,609,625...5,618,260
JBrowse link
G Bax BCL2 associated X, apoptosis regulator ISO
IEA
MGI:MGI:98834 (MGI:MGI:3042308|PMID:14963330)
GO_REF:0000107
RGD
Ensembl
PMID:14963330 GO_REF:0000107, MGI:MGI:3042308 NCBI chr 1:101,451,801...101,457,207
Ensembl chr 1:101,451,802...101,457,207
JBrowse link
G Bmf Bcl2 modifying factor ISO (PMID:23629966)
(MGI:MGI:5490676|PMID:23629966)
RGD PMID:23629966 MGI:MGI:5490676 NCBI chr 3:110,303,515...110,324,125
Ensembl chr 3:110,306,067...110,324,084
JBrowse link
G Casp9 caspase 9 ISO (PMID:15657060) RGD PMID:15657060 NCBI chr 5:160,356,211...160,373,774
Ensembl chr 5:160,355,833...160,373,778
JBrowse link
G Cdc25a cell division cycle 25A IEA
ISO
GO_REF:0000107
(PMID:19966869)
Ensembl
RGD
PMID:19966869 GO_REF:0000107 NCBI chr 8:117,953,223...117,971,552
Ensembl chr 8:117,953,444...117,971,519
JBrowse link
G Cops9 COP9 signalosome subunit 9 ISO (PMID:26456823) RGD PMID:26456823 NCBI chr 9:99,813,332...99,818,262
Ensembl chr 9:99,813,332...99,818,262
JBrowse link
G Crebbp CREB binding protein IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:24939902)
Ensembl
UniProt
RGD
PMID:24939902 GO_REF:0000024, GO_REF:0000107 NCBI chr10:11,590,994...11,721,039
Ensembl chr10:11,595,044...11,721,039
JBrowse link
G Ddias DNA damage-induced apoptosis suppressor ISO (MGI:MGI:3718924|PMID:17515607) RGD PMID:17515607 MGI:MGI:3718924 NCBI chr 1:157,675,754...157,700,064
Ensembl chr 1:157,675,765...157,700,064
JBrowse link
G Dhx36 DEAH-box helicase 36 ISS
ISO
GO_REF:0000024
(PMID:27940037)
UniProt
RGD
PMID:27940037 GO_REF:0000024 NCBI chr 2:152,785,844...152,824,549
Ensembl chr 2:152,785,844...152,824,547
JBrowse link
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 ISO (MGI:MGI:5700311|PMID:12176355) RGD PMID:12176355 MGI:MGI:5700311 NCBI chr 3:110,159,624...110,245,382
Ensembl chr 3:110,159,708...110,249,217
JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha ISO
ISS
(MGI:MGI:5700311|PMID:12176355)
GO_REF:0000024
RGD
UniProt
PMID:12176355 GO_REF:0000024, MGI:MGI:5700311 NCBI chr 6:102,048,372...102,073,041
Ensembl chr 6:102,048,372...102,073,041
JBrowse link
G Ep300 E1A binding protein p300 ISO (PMID:24939902) RGD PMID:24939902 NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO UniProtKB:Q15554 (PMID:17055345) RGD PMID:17055345 NCBI chr10:2,010,140...2,037,953
Ensembl chr10:2,010,648...2,037,891
JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 ISO (PMID:17873522) RGD PMID:17873522 NCBI chr 2:184,230,191...184,309,805
Ensembl chr 2:184,231,260...184,309,664
JBrowse link
G Fmr1 FMRP translational regulator 1 ISO
ISS
(MGI:MGI:5602914|PMID:24813610)
GO_REF:0000024
RGD
UniProt
PMID:24813610 GO_REF:0000024, MGI:MGI:5602914 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Ino80 INO80 complex ATPase subunit ISO (PMID:18026119) RGD PMID:18026119 NCBI chr 3:111,186,371...111,266,542
Ensembl chr 3:111,187,711...111,266,542
JBrowse link
G Kdm1a lysine demethylase 1A ISO (PMID:24217620) RGD PMID:24217620 NCBI chr 5:154,909,003...154,965,171
Ensembl chr 5:154,909,003...154,965,171
JBrowse link
G Mapk13 mitogen activated protein kinase 13 IEA
ISO
GO_REF:0000107
(PMID:9218798)
Ensembl
RGD
PMID:9218798 GO_REF:0000107 NCBI chr20:6,018,374...6,027,467
Ensembl chr20:6,018,374...6,027,473
JBrowse link
G Mapk9 mitogen-activated protein kinase 9 IMP RGD PMID:8875991 RGD:2304246 NCBI chr10:35,333,859...35,374,364
Ensembl chr10:35,333,859...35,374,355
JBrowse link
G Mettl3 methyltransferase-like 3 ISO (PMID:28297716) RGD PMID:28297716 NCBI chr15:28,710,299...28,721,491
Ensembl chr15:28,710,300...28,721,127
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO (PMID:17873522) RGD PMID:17873522 NCBI chr 7:102,586,313...102,591,240
Ensembl chr 7:102,586,313...102,591,240
JBrowse link
G N4bp1 Nedd4 binding protein 1 ISO (PMID:17592138)
(MGI:MGI:3829128|PMID:17592138)
RGD PMID:17592138 MGI:MGI:3829128 NCBI chr19:21,218,123...21,268,539
Ensembl chr19:21,218,465...21,266,964
JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase ISO (PMID:17996703) RGD PMID:17996703 NCBI chr 8:79,323,408...79,408,842
Ensembl chr 8:79,323,408...79,408,833
JBrowse link
G Nfatc4 nuclear factor of activated T-cells 4 ISO MGI:MGI:97583 (MGI:MGI:3709926|PMID:17242187) RGD PMID:17242187 MGI:MGI:3709926 NCBI chr15:34,493,163...34,502,238
Ensembl chr15:34,493,138...34,504,326
JBrowse link
G Noc2l NOC2-like nucleolar associated transcriptional repressor ISO (PMID:20959462) RGD PMID:20959462 NCBI chr 5:173,659,796...173,672,699
Ensembl chr 5:173,660,921...173,672,459
JBrowse link
G Npm1 nucleophosmin 1 ISO (PMID:19160485) RGD PMID:19160485 NCBI chr10:18,080,949...18,091,062
Ensembl chr10:18,080,950...18,090,950
JBrowse link
G Nsmce3 NSE3 homolog, SMC5-SMC6 complex component ISO (PMID:27427983) RGD PMID:27427983 NCBI chr 1:125,663,987...125,665,314 JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 ISO (PMID:24289924) RGD PMID:24289924 NCBI chr13:98,857,255...98,889,444
Ensembl chr13:98,857,177...98,889,716
JBrowse link
G Pbk PDZ binding kinase ISO MGI:MGI:5293435 (MGI:MGI:5293269|PMID:21715333) RGD PMID:21715333 MGI:MGI:5293269 NCBI chr15:42,489,253...42,500,377
Ensembl chr15:42,489,377...42,500,395
JBrowse link
G Pcna proliferating cell nuclear antigen IEP
ISS
ISO
GO_REF:0000024
(PMID:24939902)
UniProt
RGD
PMID:24939902, PMID:8905661 GO_REF:0000024, RGD:10448977 NCBI chr 3:124,880,698...124,884,570
Ensembl chr 3:124,880,698...124,884,570
JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 ISO MGI:MGI:103296|MGI:MGI:2149414 (MGI:MGI:3709926|PMID:17242187) RGD PMID:17242187 MGI:MGI:3709926 NCBI chr 2:31,742,326...31,826,882
Ensembl chr 2:31,745,088...31,826,867
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO
ISS
(PMID:24939902)
GO_REF:0000024
RGD
UniProt
PMID:24939902 GO_REF:0000024 NCBI chr 1:100,538,066...100,554,105
Ensembl chr 1:100,537,900...100,554,488
JBrowse link
G Polk DNA polymerase kappa ISO (PMID:28297716) RGD PMID:28297716 NCBI chr 2:27,305,718...27,364,906
Ensembl chr 2:27,305,728...27,364,906
JBrowse link
G Ppp1r15a protein phosphatase 1, regulatory subunit 15A IEP RGD PMID:9811446 RGD:9999409 NCBI chr 1:101,511,899...101,515,043
Ensembl chr 1:101,511,901...101,514,974
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 IEP RGD PMID:22306367 RGD:5688265 NCBI chr13:67,351,230...67,356,920
Ensembl chr13:67,351,087...67,359,335
JBrowse link
G Ptn pleiotrophin IEP RGD PMID:17925408 RGD:10044023 NCBI chr 4:64,239,156...64,330,996
Ensembl chr 4:64,239,158...64,330,996
JBrowse link
G Ptprk protein tyrosine phosphatase, receptor type, K ISO (PMID:16849327) RGD PMID:16849327 NCBI chr 1:17,445,052...18,058,266
Ensembl chr 1:17,446,417...18,058,055
JBrowse link
G Rhbdd1 rhomboid domain containing 1 ISO
ISS
(MGI:MGI:5430884|PMID:19358743)
GO_REF:0000024
RGD
UniProt
PMID:19358743 GO_REF:0000024, MGI:MGI:5430884 NCBI chr 9:88,110,731...88,229,462
Ensembl chr 9:88,110,731...88,229,479
JBrowse link
G Rhno1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 ISO (PMID:21659603) RGD PMID:21659603 NCBI chr 4:161,679,674...161,685,060
Ensembl chr 4:161,680,027...161,681,660
JBrowse link
G Rnf168 ring finger protein 168 ISO (MGI:MGI:5562615|PMID:24217620) RGD PMID:24217620 MGI:MGI:5562615 NCBI chr11:71,721,242...71,743,421
Ensembl chr11:71,721,250...71,743,421
JBrowse link
G Rpl26 ribosomal protein L26 ISO (PMID:16213212) RGD PMID:16213212 NCBI chr10:55,492,417...55,495,547
Ensembl chr10:55,492,404...55,496,012
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 ISO (PMID:18026119) RGD PMID:18026119 NCBI chr 1:101,413,766...101,426,970
Ensembl chr 1:101,413,766...101,426,852
JBrowse link
G Sde2 SDE2 telomere maintenance homolog IEA
ISO
GO_REF:0000107
(PMID:27906959)
Ensembl
RGD
PMID:27906959 GO_REF:0000107 NCBI chr13:99,136,921...99,153,187
Ensembl chr13:99,136,871...99,153,181
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 ISO (PMID:24289924) RGD PMID:24289924 NCBI chr  X:71,412,291...71,486,456
Ensembl chr  X:71,412,289...71,485,085
JBrowse link
G Tmem161a transmembrane protein 161A ISO (PMID:16551573) RGD PMID:16551573 NCBI chr16:20,985,841...20,996,351
Ensembl chr16:20,986,687...20,994,379
JBrowse link
G Tp53 tumor protein p53 ISO (PMID:16213212), (PMID:23629966)
MGI:MGI:99702 (MGI:MGI:3042308|PMID:14963330), (MGI:MGI:5490676|PMID:23629966)
RGD PMID:14963330, PMID:16213212, PMID:23629966 MGI:MGI:3042308, MGI:MGI:5490676 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 ISO
IEA
(MGI:MGI:2153600|PMID:11557757)
GO_REF:0000107
RGD
Ensembl
PMID:11557757 GO_REF:0000107, MGI:MGI:2153600 NCBI chr 5:24,402,895...24,419,651
Ensembl chr 5:24,410,863...24,416,888
JBrowse link
G Trex1 three prime repair exonuclease 1 ISO (MGI:MGI:5014018|PMID:20511593) RGD PMID:20511593 MGI:MGI:5014018 NCBI chr 8:117,796,127...117,797,427
Ensembl chr 8:117,796,128...117,797,427
JBrowse link
G Triap1 TP53 regulated inhibitor of apoptosis 1 ISO (PMID:15735003) RGD PMID:15735003 NCBI chr12:46,987,404...46,989,906
Ensembl chr12:46,987,404...46,989,897
Ensembl chr12:46,987,404...46,989,897
JBrowse link
G Usp28 ubiquitin specific peptidase 28 IEA
ISO
GO_REF:0000107
(PMID:17873522)
Ensembl
RGD
PMID:17873522 GO_REF:0000107 NCBI chr 8:53,295,188...53,355,572
Ensembl chr 8:53,295,222...53,355,572
JBrowse link
G Usp47 ubiquitin specific peptidase 47 ISO (MGI:MGI:4839431|PMID:19966869) RGD PMID:19966869 MGI:MGI:4839431 NCBI chr 1:176,854,589...176,937,763
Ensembl chr 1:176,854,653...176,937,763
JBrowse link
G Yy1 YY1 transcription factor ISO (PMID:18026119) RGD PMID:18026119 NCBI chr 6:132,702,443...132,726,848
Ensembl chr 6:132,702,448...132,727,046
JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 ISO (PMID:24657165) RGD PMID:24657165 NCBI chr 6:99,401,775...99,425,739
Ensembl chr 6:99,402,360...99,424,019
JBrowse link
cellular response to UV-A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cers1 ceramide synthase 1 ISO (PMID:19800881) RGD PMID:19800881 NCBI chr16:20,845,580...20,860,789
Ensembl chr16:20,845,576...20,860,789
JBrowse link
G Mme membrane metallo-endopeptidase ISO
ISS
(PMID:20876573)
GO_REF:0000024
RGD
UniProt
PMID:20876573 GO_REF:0000024 NCBI chr 2:153,799,203...153,880,910
Ensembl chr 2:153,803,349...153,880,738
JBrowse link
G Mmp1 matrix metallopeptidase 1 ISO (PMID:31380578) RGD PMID:31380578 NCBI chr 8:5,703,206...5,723,593
Ensembl chr 8:5,703,206...5,723,591
JBrowse link
G Mmp2 matrix metallopeptidase 2 ISO
ISS
IEA
(PMID:31380578)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:31380578 GO_REF:0000024, GO_REF:0000107 NCBI chr19:15,542,771...15,570,589
Ensembl chr19:15,542,765...15,570,611
JBrowse link
G Mmp3 matrix metallopeptidase 3 ISO
ISS
(PMID:31380578)
GO_REF:0000024
RGD
UniProt
PMID:31380578 GO_REF:0000024 NCBI chr 8:5,676,608...5,698,579
Ensembl chr 8:5,676,665...5,698,579
JBrowse link
G Mmp9 matrix metallopeptidase 9 ISO
IEA
(PMID:31380578)
GO_REF:0000107
RGD
Ensembl
PMID:31380578 GO_REF:0000107 NCBI chr 3:161,413,410...161,421,473
Ensembl chr 3:161,413,298...161,421,520
JBrowse link
G Opn1sw opsin 1, short wave sensitive ISO
ISS
IEA
(PMID:31380578)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:31380578 GO_REF:0000024, GO_REF:0000107 NCBI chr 4:56,653,840...56,656,980
Ensembl chr 4:56,653,844...56,656,980
JBrowse link
G Opn3 opsin 3 ISO
IEA
(PMID:31380578)
GO_REF:0000107
RGD
Ensembl
PMID:31380578 GO_REF:0000107 NCBI chr13:93,716,481...93,746,994
Ensembl chr13:93,716,481...93,746,994
JBrowse link
G Opn5 opsin 5 ISO
IEA
(PMID:31380578)
GO_REF:0000107
RGD
Ensembl
PMID:31380578 GO_REF:0000107 NCBI chr 9:21,045,457...21,092,517
Ensembl chr 9:21,045,457...21,093,172
JBrowse link
G Ppid peptidylprolyl isomerase D ISO
ISS
(PMID:23220213)
GO_REF:0000024
RGD
UniProt
PMID:23220213 GO_REF:0000024 NCBI chr 2:178,354,830...178,366,843
Ensembl chr 2:178,354,890...178,366,685
JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 ISO
ISS
(PMID:31380578)
GO_REF:0000024
RGD
UniProt
PMID:31380578 GO_REF:0000024 NCBI chr  X:1,364,771...1,369,451
Ensembl chr  X:1,364,786...1,369,384
JBrowse link
cellular response to UV-B term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1a cyclin-dependent kinase inhibitor 1A ISO (MGI:MGI:5613877|PMID:25329316) RGD PMID:25329316 MGI:MGI:5613877 NCBI chr20:6,348,422...6,358,864
Ensembl chr20:6,351,458...6,358,864
JBrowse link
G Crip1 cysteine rich protein 1 ISO
ISS
(PMID:20415737) RGD PMID:20415737, PMID:20415737 RGD:8553326 NCBI chr 6:137,959,171...137,967,042
Ensembl chr 6:137,959,171...137,967,042
JBrowse link
G Hyal1 hyaluronidase 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:21699545)
Ensembl
UniProt
RGD
PMID:21699545 GO_REF:0000024, GO_REF:0000107 NCBI chr 8:116,332,834...116,337,522
Ensembl chr 8:116,332,796...116,335,435
JBrowse link
G Hyal2 hyaluronidase 2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:21699545)
Ensembl
UniProt
RGD
PMID:21699545 GO_REF:0000024, GO_REF:0000107 NCBI chr 8:116,324,062...116,328,978
Ensembl chr 8:116,324,040...116,328,978
JBrowse link
G Hyal3 hyaluronidase 3 IEA
ISO
GO_REF:0000107
(PMID:21699545)
Ensembl
RGD
PMID:21699545 GO_REF:0000107 NCBI chr 8:116,336,512...116,342,147
Ensembl chr 8:116,336,512...116,342,146
JBrowse link
G Mfap4 microfibril associated protein 4 ISO (PMID:22355679) RGD PMID:22355679 NCBI chr10:47,765,463...47,768,484
Ensembl chr10:47,765,432...47,768,483
JBrowse link
G Mme membrane metallo-endopeptidase ISO
ISS
(PMID:20876573)
GO_REF:0000024
RGD
UniProt
PMID:20876573 GO_REF:0000024 NCBI chr 2:153,799,203...153,880,910
Ensembl chr 2:153,803,349...153,880,738
JBrowse link
G Rpl13a ribosomal protein L13A IEP RGD PMID:10483362 RGD:11036101 NCBI chr 1:101,120,325...101,123,401
Ensembl chr 1:101,120,325...101,123,402
JBrowse link
G Rpl35 ribosomal protein L35 IEP RGD PMID:10483362 RGD:11036101 NCBI chr 3:23,294,813...23,297,774
Ensembl chr 3:23,294,814...23,297,774
JBrowse link
G Stk11 serine/threonine kinase 11 IEA
ISO
GO_REF:0000107
(MGI:MGI:5613877|PMID:25329316)
(PMID:25329316)
Ensembl
RGD
PMID:25329316 GO_REF:0000107, MGI:MGI:5613877 NCBI chr 7:12,440,751...12,457,513
Ensembl chr 7:12,440,751...12,457,513
JBrowse link
cellular response to UV-C term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ei24 EI24, autophagy associated transmembrane protein ISO MGI:MGI:98834 (MGI:MGI:5543725|PMID:24014029) RGD PMID:24014029 MGI:MGI:5543725 NCBI chr 8:39,254,883...39,271,238
Ensembl chr 8:39,254,889...39,266,959
JBrowse link
G Impact impact RWD domain protein ISO
ISS
(MGI:MGI:5576818|PMID:24333428)
GO_REF:0000024
RGD
UniProt
PMID:24333428 GO_REF:0000024, MGI:MGI:5576818 NCBI chr18:4,325,872...4,346,734
Ensembl chr18:4,325,875...4,346,769
JBrowse link
G Mdm2 MDM2 proto-oncogene IEP RGD PMID:14558917 RGD:2317408 NCBI chr 7:60,719,060...60,743,618
Ensembl chr 7:60,719,066...60,743,328
JBrowse link
G Polh DNA polymerase eta ISO MGI:MGI:1347081|MGI:MGI:3614412 (MGI:MGI:3695544|PMID:17114294) RGD PMID:17114294 MGI:MGI:3695544 NCBI chr 9:17,163,354...17,198,006
Ensembl chr 9:17,163,354...17,197,132
JBrowse link
G Poli DNA polymerase iota ISO MGI:MGI:1891457|MGI:MGI:3055735 (MGI:MGI:3695544|PMID:17114294) RGD PMID:17114294 MGI:MGI:3695544 NCBI chr18:65,749,107...65,768,805
Ensembl chr18:65,748,908...65,768,781
JBrowse link
G RGD1306233 similar to hypothetical protein MGC29761 ISO (MGI:MGI:4868626|PMID:21159655) RGD PMID:21159655 MGI:MGI:4868626 NCBI chr 3:7,047,603...7,051,953
Ensembl chr 3:7,047,603...7,051,953
JBrowse link
G Tp53 tumor protein p53 ISO MGI:MGI:108090 (MGI:MGI:5543725|PMID:24014029) RGD PMID:24014029 MGI:MGI:5543725 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
dark adaptation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent2 terminal nucleotidyltransferase 2 IEP RGD PMID:23700402 RGD:11041783 NCBI chr 2:22,746,290...22,798,252
Ensembl chr 2:22,747,547...22,798,214
JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT ISS
ISO
GO_REF:0000024
(PMID:1730053)
UniProt
RGD
PMID:1730053 GO_REF:0000024 NCBI chr  X:62,382,604...62,698,830
Ensembl chr  X:62,382,608...62,698,830
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:165,085,142...165,122,385
Ensembl chr 1:165,083,622...165,123,455
JBrowse link
G Trex1 three prime repair exonuclease 1 ISO MGI:MGI:3052754 (MGI:MGI:5562498|PMID:23993650) RGD PMID:23993650 MGI:MGI:5562498 NCBI chr 8:117,796,127...117,797,427
Ensembl chr 8:117,796,128...117,797,427
JBrowse link
negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nedd4 NEDD4 E3 ubiquitin protein ligase ISO (PMID:17996703) RGD PMID:17996703 NCBI chr 8:79,323,408...79,408,842
Ensembl chr 8:79,323,408...79,408,833
JBrowse link
phototransduction, UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Opn5 opsin 5 ISO (PMID:22043319)
(MGI:MGI:6230806|PMID:22043319)
RGD PMID:22043319 MGI:MGI:6230806 NCBI chr 9:21,045,457...21,092,517
Ensembl chr 9:21,045,457...21,093,172
JBrowse link
red, far-red light phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin IDA RGD PMID:2525480 RGD:6893558 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
JBrowse link
regulation of mRNA stability involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Npm1 nucleophosmin 1 ISO (PMID:12080348) RGD PMID:12080348 NCBI chr10:18,080,949...18,091,062
Ensembl chr10:18,080,950...18,090,950
JBrowse link
regulation of rhodopsin mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 ISO MGI:MGI:3054784|MGI:MGI:3054793 (MGI:MGI:3054118|PMID:15365173), (MGI:MGI:3054134|PMID:15365178) RGD PMID:15365173, PMID:15365178 MGI:MGI:3054118, MGI:MGI:3054134 NCBI chr10:58,599,690...58,631,194
Ensembl chr10:58,599,856...58,608,907
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:15946941)
Ensembl
UniProt
RGD
PMID:15946941 GO_REF:0000024, GO_REF:0000107 NCBI chr16:81,153,489...81,165,442
Ensembl chr16:81,153,489...81,165,442
JBrowse link
regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chek1 checkpoint kinase 1 ISO
ISS
(MGI:MGI:5294291|PMID:18243098)
GO_REF:0000024
RGD
UniProt
PMID:18243098 GO_REF:0000024, MGI:MGI:5294291 NCBI chr 8:39,181,162...39,201,588
Ensembl chr 8:39,181,163...39,243,882
JBrowse link
regulation of translation involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpl26 ribosomal protein L26 ISO (PMID:16213212) RGD PMID:16213212 NCBI chr10:55,492,417...55,495,547
Ensembl chr10:55,492,404...55,496,012
JBrowse link
rhodopsin mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat1 G protein subunit alpha transducin 1 IMP RGD PMID:11931744 RGD:1599009 NCBI chr 8:116,433,302...116,438,038
Ensembl chr 8:116,433,302...116,438,038
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 TAS RGD PMID:9147475 RGD:729748 NCBI chr16:81,153,489...81,165,442
Ensembl chr16:81,153,489...81,165,442
JBrowse link
G Opn4 opsin 4 ISO (MGI:MGI:4438311|PMID:19793992) RGD PMID:19793992 MGI:MGI:4438311 NCBI chr16:10,943,353...10,966,602
Ensembl chr16:10,943,341...10,952,549
JBrowse link
G Pcp2 Purkinje cell protein 2 ISO MGI:MGI:3579782 (MGI:MGI:3817370|PMID:18768681) RGD PMID:18768681 MGI:MGI:3817370 NCBI chr12:2,172,378...2,174,674
Ensembl chr12:2,172,378...2,174,131
JBrowse link
G Rho rhodopsin IDA RGD PMID:8814134 RGD:6893595 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
JBrowse link
UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr5 actin related protein 5 ISO (PMID:20855601) RGD PMID:20855601 NCBI chr 3:155,118,567...155,132,073
Ensembl chr 3:155,119,042...155,131,829
JBrowse link
G Cul4b cullin 4B ISO (PMID:22334663) RGD PMID:22334663 NCBI chr  X:124,831,391...124,870,329
Ensembl chr  X:124,832,628...124,870,329
JBrowse link
G Ddb1 damage-specific DNA binding protein 1 IEA
ISO
GO_REF:0000107
(PMID:22334663)
Ensembl
RGD
PMID:22334663 GO_REF:0000107 NCBI chr 1:226,657,561...226,683,356
Ensembl chr 1:226,657,561...226,683,347
JBrowse link
G Ddb2 damage specific DNA binding protein 2 ISO (PMID:22334663) RGD PMID:22334663 NCBI chr 3:80,030,437...80,052,984
Ensembl chr 3:80,030,437...80,052,953
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:80,256,973...80,268,198
Ensembl chr 1:80,256,973...80,268,198
JBrowse link
G Ino80 INO80 complex ATPase subunit ISO (PMID:20855601) RGD PMID:20855601 NCBI chr 3:111,186,371...111,266,542
Ensembl chr 3:111,187,711...111,266,542
JBrowse link
G Mc1r melanocortin 1 receptor ISO (PMID:18292087) RGD PMID:18292087 NCBI chr19:56,215,420...56,219,987 JBrowse link
G Sirt1 sirtuin 1 ISO
IEA
(PMID:20670893)
GO_REF:0000107
RGD
Ensembl
PMID:20670893 GO_REF:0000107 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:61,749,767...61,793,641
Ensembl chr 5:61,749,767...61,792,928
JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor ISO (PMID:8077226)
(MGI:MGI:5427285|PMID:22431748)
RGD PMID:8077226, PMID:22431748 MGI:MGI:5427285 NCBI chr 4:123,134,457...123,161,985
Ensembl chr 4:123,134,457...123,161,985
JBrowse link
UV-damage excision repair, DNA incision term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpc XPC complex subunit, DNA damage recognition and repair factor ISO MGI:MGI:1931883 (MGI:MGI:3697767|PMID:17049932) RGD PMID:17049932 MGI:MGI:3697767 NCBI chr 4:123,134,457...123,161,985
Ensembl chr 4:123,134,457...123,161,985
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    response to stimulus 10583
      response to abiotic stimulus 1511
        response to radiation 535
          response to light stimulus 347
            cellular response to light stimulus 115
              cellular response to UV + 95
              cellular response to blue light + 0
              cellular response to light intensity + 2
              cellular response to red or far red light + 1
              rhodopsin mediated signaling pathway + 8
Path 2
Term Annotations click to browse term
  biological_process 20027
    cellular process 18798
      cellular response to stimulus 8920
        cellular response to environmental stimulus 407
          cellular response to abiotic stimulus 407
            cellular response to radiation 187
              cellular response to light stimulus 115
                cellular response to UV + 95
                cellular response to blue light + 0
                cellular response to light intensity + 2
                cellular response to red or far red light + 1
                rhodopsin mediated signaling pathway + 8
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.