Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:genetic imprinting
go back to main search page
Accession:GO:0071514 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules by a mechanism that is mediated by DNA, is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA sequence.
Synonyms:exact_synonym: DNA imprinting


show annotations for term's descendants           Sort by:
 
genetic imprinting term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asip agouti signaling protein ISO MGI:MGI:1855930|MGI:MGI:1855937 (MGI:MGI:2652932|PMID:12601169) RGD PMID:12601169 MGI:MGI:2652932 NCBI chr 3:150,492,010...150,579,870
Ensembl chr 3:150,574,473...150,579,870
JBrowse link
G Axin1 axin 1 ISO MGI:MGI:1856035 (MGI:MGI:2652932|PMID:12601169) RGD PMID:12601169 MGI:MGI:2652932
G Cdkn1c cyclin-dependent kinase inhibitor 1C ISO MGI:MGI:1933758|MGI:MGI:3840687 (MGI:MGI:3839493|PMID:19276117) RGD PMID:19276117 MGI:MGI:3839493 NCBI chr 1:216,661,067...216,663,791
Ensembl chr 1:216,661,080...216,663,721
JBrowse link
G Ctcf CCCTC-binding factor ISO (PMID:17827499) RGD PMID:17827499 NCBI chr19:37,600,151...37,649,674
Ensembl chr19:37,600,148...37,649,673
JBrowse link
G Dnmt3l DNA methyltransferase 3 like ISO
IEA
MGI:MGI:2447127 (MGI:MGI:3663953|PMID:16920095)
GO_REF:0000107
RGD
Ensembl
PMID:16920095 GO_REF:0000107, MGI:MGI:3663953 NCBI chr20:11,344,513...11,359,090
Ensembl chr20:11,344,514...11,359,090
JBrowse link
G Gnas GNAS complex locus ISO MGI:MGI:4459474 (MGI:MGI:4454202|PMID:20427744) RGD PMID:20427744 MGI:MGI:4454202 NCBI chr 3:172,374,957...172,434,988
Ensembl chr 3:172,374,957...172,428,483
Ensembl chr 3:172,374,957...172,428,483
JBrowse link
G Ndn necdin, MAGE family member ISO MGI:MGI:2653045|MGI:MGI:2653048 (MGI:MGI:1345919|PMID:10508517) RGD PMID:10508517 MGI:MGI:1345919 NCBI chr 1:122,981,755...122,983,354
Ensembl chr 1:122,981,755...122,983,351
JBrowse link
inactivation of X chromosome by genetic imprinting term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcgf3 polycomb group ring finger 3 ISO (MGI:MGI:5908473|PMID:28596365) RGD PMID:28596365 MGI:MGI:5908473 NCBI chr14:2,247,805...2,297,155
Ensembl chr14:2,247,808...2,297,155
JBrowse link
G Pcgf5 polycomb group ring finger 5 ISO
IBA
(MGI:MGI:5908473|PMID:28596365)
PMID:21873635
RGD PMID:28596365, PMID:21873635 MGI:MGI:5908473, RGD:13792537 NCBI chr 1:254,974,688...255,090,925
Ensembl chr 1:254,974,789...255,086,207
JBrowse link
maintenance of imprinting at mating-type locus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp445 zinc finger protein 445 ISO UniProtKB:Q8C6P8 (MGI:MGI:6284037|PMID:30602440) RGD PMID:30602440 MGI:MGI:6284037 NCBI chr 8:131,885,119...131,904,303
Ensembl chr 8:131,888,047...131,899,023
JBrowse link
G Zfp57 zinc finger protein 57 ISO UniProtKB:Q8R2V3 (MGI:MGI:6284037|PMID:30602440) RGD PMID:30602440 MGI:MGI:6284037 NCBI chr20:2,014,177...2,020,488
Ensembl chr20:2,014,170...2,020,537
JBrowse link
regulation of gene expression by genetic imprinting term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid4a AT-rich interaction domain 4A ISO MGI:MGI:2137512 (MGI:MGI:3686546|PMID:17043311) RGD PMID:17043311 MGI:MGI:3686546 NCBI chr 6:93,461,713...93,532,901
Ensembl chr 6:93,461,713...93,532,901
JBrowse link
G Arid4b AT-rich interaction domain 4B ISO MGI:MGI:2444354 (MGI:MGI:3686546|PMID:17043311) RGD PMID:17043311 MGI:MGI:3686546 NCBI chr17:53,831,353...53,955,897
Ensembl chr17:53,833,023...53,915,076
JBrowse link
G Brca1 BRCA1, DNA repair associated ISO
IEA
(MGI:MGI:5009779|PMID:20820192)
GO_REF:0000107
RGD
Ensembl
PMID:20820192 GO_REF:0000107, MGI:MGI:5009779 NCBI chr10:89,394,821...89,455,093
Ensembl chr10:89,394,803...89,454,681
JBrowse link
G Ctcf CCCTC-binding factor IEA
ISO
GO_REF:0000107
(MGI:MGI:2450195|PMID:12461525), (MGI:MGI:3044090|PMID:14716017), (MGI:MGI:3045676|PMID:15143173)
Ensembl
RGD
PMID:12461525, PMID:14716017, PMID:15143173 GO_REF:0000107, MGI:MGI:2450195, MGI:MGI:3044090, MGI:MGI:3045676 NCBI chr19:37,600,151...37,649,674
Ensembl chr19:37,600,148...37,649,673
JBrowse link
G Ctcfl CCCTC-binding factor like ISO (MGI:MGI:3692841|PMID:17048991) RGD PMID:17048991 MGI:MGI:3692841 NCBI chr 3:171,145,203...171,168,375
Ensembl chr 3:171,145,584...171,166,454
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha ISO MGI:MGI:2182412|MGI:MGI:3047552|MGI:MGI:3047824 (MGI:MGI:2178074|PMID:11934864), (MGI:MGI:3045942|PMID:15215868), (MGI:MGI:5009774|PMID:21047779) RGD PMID:11934864, PMID:15215868, PMID:21047779 MGI:MGI:2178074, MGI:MGI:3045942, MGI:MGI:5009774 NCBI chr 6:28,205,375...28,346,052
Ensembl chr 6:28,235,695...28,340,577
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta ISO MGI:MGI:2182410|MGI:MGI:2182414 (MGI:MGI:2178074|PMID:11934864) RGD PMID:11934864 MGI:MGI:2178074 NCBI chr 3:149,131,541...149,170,061
Ensembl chr 3:149,131,785...149,208,786
JBrowse link
G Eed embryonic ectoderm development ISO MGI:MGI:1856856 (MGI:MGI:2655036|PMID:12627233) RGD PMID:12627233 MGI:MGI:2655036 NCBI chr 1:154,189,252...154,216,340
Ensembl chr 1:154,189,260...154,216,340
JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha ISO (MGI:MGI:5009774|PMID:21047779) RGD PMID:21047779 MGI:MGI:5009774 NCBI chr 1:82,097,244...82,108,238
Ensembl chr 1:82,097,247...82,108,203
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO (MGI:MGI:5009774|PMID:21047779) RGD PMID:21047779 MGI:MGI:5009774 NCBI chr11:65,060,884...65,208,842
Ensembl chr11:65,066,235...65,209,268
JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 IEA
ISO
GO_REF:0000107
MGI:MGI:2429679 (MGI:MGI:2389526|PMID:12410230), (MGI:MGI:3054495|PMID:15340049)
Ensembl
RGD
PMID:12410230, PMID:15340049 GO_REF:0000107, MGI:MGI:2389526, MGI:MGI:3054495 NCBI chr 1:216,293,087...216,630,339
Ensembl chr 1:216,293,087...216,630,339
JBrowse link
G Kdm1b lysine demethylase 1B ISO MGI:MGI:4359289 (MGI:MGI:4358629|PMID:19727073) RGD PMID:19727073 MGI:MGI:4358629 NCBI chr17:17,987,972...18,028,808
Ensembl chr17:17,987,972...18,028,808
JBrowse link
G Mecp2 methyl CpG binding protein 2 ISO
IEA
MGI:MGI:2137311 (MGI:MGI:3530434|PMID:15608638)
GO_REF:0000107
(PMID:15608638)
RGD
Ensembl
PMID:15608638 GO_REF:0000107, MGI:MGI:3530434 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Prmt7 protein arginine methyltransferase 7 ISO
ISS
(MGI:MGI:3692841|PMID:17048991)
GO_REF:0000024
RGD
UniProt
PMID:17048991 GO_REF:0000024, MGI:MGI:3692841 NCBI chr19:38,189,605...38,237,155
Ensembl chr19:38,189,605...38,237,308
JBrowse link
G Zfp57 zinc finger protein 57 ISO
ISS
(PMID:18622393)
GO_REF:0000024
(MGI:MGI:3826319|PMID:18854139)
RGD
UniProt
PMID:18622393, PMID:18854139 GO_REF:0000024, MGI:MGI:3826319 NCBI chr20:2,014,177...2,020,488
Ensembl chr20:2,014,170...2,020,537
JBrowse link
regulation of genetic imprinting term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07015759.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr14:74,094,670...74,095,146 JBrowse link
G AABR07017902.2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:32,412,245...32,412,709 JBrowse link
G AABR07026842.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:2,920,610...2,921,083 JBrowse link
G AABR07058017.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:98,734,716...98,735,192 JBrowse link
G AABR07061871.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:150,199,627...150,200,088 JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO (MGI:MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:MGI:5528755 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165
JBrowse link
G Dppa3 developmental pluripotency-associated 3 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:MGI:5432962|PMID:22722204), (MGI:MGI:5447615|PMID:17143267)
UniProt
RGD
PMID:17143267, PMID:22722204, PMID:21873635 GO_REF:0000024, MGI:MGI:5432962, MGI:MGI:5447615, RGD:13792537 NCBI chr 4:155,437,675...155,441,059
Ensembl chr 3:111,298,713...111,299,189
Ensembl chr 4:111,298,713...111,299,189
JBrowse link
G Dppa3l1 developmental pluripotency associated 3-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:60,683,180...60,683,658
Ensembl chr 8:60,683,183...60,683,632
JBrowse link
G LOC679766 similar to developmental pluripotency-associated 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:74,094,652...74,095,296 JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha ISO (MGI:MGI:5009774|PMID:21047779) RGD PMID:21047779 MGI:MGI:5009774 NCBI chr 2:118,831,350...118,861,456
Ensembl chr 2:118,831,350...118,861,454
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 ISO MGI:MGI:4120924 (MGI:MGI:5559953|PMID:24291790) RGD PMID:24291790 MGI:MGI:5559953 NCBI chr20:27,359,122...27,438,039
Ensembl chr20:27,366,213...27,437,427
JBrowse link
G Trim28 tripartite motif-containing 28 ISO MGI:MGI:1928907 (MGI:MGI:5319411|PMID:22495301) RGD PMID:22495301 MGI:MGI:5319411 NCBI chr 1:65,544,369...65,551,043
Ensembl chr 1:65,544,373...65,551,043
JBrowse link
G Zfp42 zinc finger protein 42 ISO MGI:MGI:4125334 (MGI:MGI:4940138|PMID:21233130) RGD PMID:21233130 MGI:MGI:4940138 NCBI chr16:52,016,590...52,026,346 JBrowse link
G Zfp445 zinc finger protein 445 ISO (PMID:30602440)
UniProtKB:Q8C6P8 (MGI:MGI:6284037|PMID:30602440)
RGD PMID:30602440 MGI:MGI:6284037 NCBI chr 8:131,885,119...131,904,303
Ensembl chr 8:131,888,047...131,899,023
JBrowse link
G Zfp57 zinc finger protein 57 ISO UniProtKB:Q8R2V3 (MGI:MGI:6284037|PMID:30602440) RGD PMID:30602440 MGI:MGI:6284037 NCBI chr20:2,014,177...2,020,488
Ensembl chr20:2,014,170...2,020,537
JBrowse link
site-specific DNA replication termination at RTS1 barrier term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rtfdc1 replication termination factor 2 domain containing 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:170,443,895...170,473,456
Ensembl chr 3:170,443,855...170,473,456
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    metabolic process 12278
      primary metabolic process 10941
        nucleobase-containing compound metabolic process 5489
          genetic imprinting 38
            genetic imprinting at mating-type locus + 3
            regulation of gene expression by genetic imprinting + 17
            regulation of genetic imprinting 15
Path 2
Term Annotations click to browse term
  biological_process 20027
    metabolic process 12278
      cellular metabolic process 11085
        cellular aromatic compound metabolic process 5715
          nucleobase-containing compound metabolic process 5489
            genetic imprinting 38
              genetic imprinting at mating-type locus + 3
              regulation of gene expression by genetic imprinting + 17
              regulation of genetic imprinting 15
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.