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ONTOLOGY REPORT - ANNOTATIONS


Term:otic vesicle development
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Accession:GO:0071599 term browser browse the term
Definition:The process whose specific outcome is the progression of the otic vesicle over time, from its formation to the mature structure. The otic vesicle is a transient embryonic structure formed during development of the vertebrate inner ear.


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otic vesicle development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO
ISS
UniProtKB:F8W3V6 (MGI:MGI:5306539|PMID:21959375)
GO_REF:0000024
RGD
UniProt
PMID:21959375 GO_REF:0000024, MGI:MGI:5306539 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Col2a1 collagen type II alpha 1 chain IEA
ISO
GO_REF:0000107
(PMID:9119111)
Ensembl
RGD
PMID:9119111 GO_REF:0000107 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO MGI:MGI:102780 (MGI:MGI:5319720|PMID:22513373) RGD PMID:22513373 MGI:MGI:5319720 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142
JBrowse link
G Gata3 GATA binding protein 3 ISO MGI:MGI:2181200 (MGI:MGI:1928163|PMID:11135239) RGD PMID:11135239 MGI:MGI:1928163 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681
JBrowse link
G Get1 guided entry of tail-anchored proteins factor 1 ISO MGI:MGI:5911419|MGI:MGI:6117117 (MGI:MGI:5817553|PMID:27458190) RGD PMID:27458190 MGI:MGI:5817553 NCBI chr11:36,497,513...36,511,445
Ensembl chr11:36,497,509...36,511,535
JBrowse link
G Pax8 paired box 8 ISO (PMID:15494458) RGD PMID:15494458 NCBI chr 3:1,527,316...1,586,019
Ensembl chr 3:1,527,279...1,584,946
JBrowse link
G Six1 SIX homeobox 1 ISO MGI:MGI:109344|MGI:MGI:2655195 (MGI:MGI:3702803|PMID:16916509), (MGI:MGI:5319720|PMID:22513373) RGD PMID:16916509, PMID:22513373 MGI:MGI:3702803, MGI:MGI:5319720 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO (PMID:9119111) RGD PMID:9119111 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
otic vesicle formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 ISO MGI:MGI:95517 (MGI:MGI:2683889|PMID:14623822) RGD PMID:14623822 MGI:MGI:2683889 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
G Fgf3 fibroblast growth factor 3 ISO MGI:MGI:1099809|MGI:MGI:96604 (MGI:MGI:3720541|PMID:17601531) RGD PMID:17601531 MGI:MGI:3720541 NCBI chr 1:218,003,018...218,006,942
Ensembl chr 1:218,003,018...218,006,942
JBrowse link
G Fgf8 fibroblast growth factor 8 ISO MGI:MGI:95117 (MGI:MGI:3720541|PMID:17601531) RGD PMID:17601531 MGI:MGI:3720541 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:MGI:2153790 (MGI:MGI:1197797|PMID:9435295) RGD PMID:9435295 MGI:MGI:1197797 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Hesx1 HESX homeobox 1 ISO MGI:MGI:1931124 (MGI:MGI:1206234|PMID:9620767) RGD PMID:9620767 MGI:MGI:1206234 NCBI chr16:2,616,538...2,636,708
Ensembl chr16:2,634,603...2,636,708
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO
ISS
MGI:MGI:1932522|MGI:MGI:2385468 (MGI:MGI:3795349|PMID:18377888)
GO_REF:0000024
RGD
UniProt
PMID:18377888 GO_REF:0000024, MGI:MGI:3795349 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Tcap titin-cap ISO (PMID:9817758) RGD PMID:9817758 NCBI chr10:86,337,705...86,338,414
Ensembl chr10:86,337,728...86,338,411
JBrowse link
otic vesicle morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO MGI:MGI:2150426 (MGI:MGI:3702803|PMID:16916509) RGD PMID:16916509 MGI:MGI:3702803 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142
JBrowse link
G Tbx1 T-box transcription factor 1 ISO MGI:MGI:3046793 (MGI:MGI:3703494|PMID:17074316) RGD PMID:17074316 MGI:MGI:3703494 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
positive regulation of otic vesicle morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stox1 storkhead box 1 ISO (MGI:MGI:5635320|PMID:25677106) RGD PMID:25677106 MGI:MGI:5635320 NCBI chr20:32,276,857...32,353,677
Ensembl chr20:32,276,658...32,353,677
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure development 6269
        tube development 1209
          otic vesicle development 16
            otic vesicle morphogenesis + 10
Path 2
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure development 6269
        multicellular organism development 5744
          system development 5280
            animal organ development 4035
              sensory organ development 696
                ear development 269
                  inner ear development 242
                    otic vesicle development 16
                      otic vesicle morphogenesis + 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.