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ONTOLOGY REPORT - ANNOTATIONS


Term:ectodermal placode morphogenesis
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Accession:GO:0071697 term browser browse the term
Definition:The process in which the anatomical structures of an ectodermal placode are generated and organized. An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm.


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hair follicle placode formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin (cadherin associated protein), beta 1 IGI
IMP
(MGI:4355652|PMID:19619491)
(MGI:1934694|PMID:11371349)
MGI PMID:11371349, PMID:19619491 MGI:1934694, MGI:4355652 NCBI chr 9:120,933,400...120,960,507
Ensembl chr 9:120,929,216...120,960,507
JBrowse link
G Eda ectodysplasin-A IGI (MGI:4355652|PMID:19619491) MGI PMID:19619491 MGI:4355652 NCBI chr  X:99,975,606...100,400,760
Ensembl chr  X:99,975,606...100,400,762
JBrowse link
G Gnas GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 2:174,284,320...174,346,744
Ensembl chr 2:174,284,320...174,346,744
JBrowse link
G Hdac1 histone deacetylase 1 IGI (MGI:4889029|PMID:21093383) BHF-UCL PMID:21093383 MGI:4889029 NCBI chr 4:129,516,104...129,542,646
Ensembl chr 4:129,516,104...129,542,713
JBrowse link
G Hdac2 histone deacetylase 2 IGI (MGI:4889029|PMID:21093383) BHF-UCL PMID:21093383 MGI:4889029 NCBI chr10:36,974,297...37,001,889
Ensembl chr10:36,974,544...37,001,889
JBrowse link
mammary placode formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 low density lipoprotein receptor-related protein 6 IMP (MGI:3849913|PMID:19503830) MGI PMID:19503830 MGI:3849913 NCBI chr 6:134,446,476...134,566,913
Ensembl chr 6:134,446,476...134,566,965
JBrowse link
G Nrg3 neuregulin 3 IMP (MGI:1353819|PMID:10723730) MGI PMID:10723730 MGI:1353819 NCBI chr14:38,365,102...39,473,235
Ensembl chr14:38,368,952...39,473,088
JBrowse link
G Tbx2 T-box 2 IGI (MGI:3608166|PMID:16222716) MGI PMID:16222716 MGI:3608166 NCBI chr11:85,832,615...85,841,948
Ensembl chr11:85,832,551...85,841,948
JBrowse link
G Tbx3 T-box 3 IDA
IGI
(MGI:3695659|PMID:17071745)
(MGI:3608166|PMID:16222716)
MGI PMID:16222716, PMID:17071745 MGI:3608166, MGI:3695659 NCBI chr 5:119,670,534...119,684,724
Ensembl chr 5:119,670,669...119,684,724
JBrowse link
negative regulation of hair follicle placode formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk4 dickkopf WNT signaling pathway inhibitor 4 IDA (MGI:3805070|PMID:18508042) MGI PMID:18508042 MGI:3805070 NCBI chr 8:22,623,685...22,628,018
Ensembl chr 8:22,624,043...22,627,547
JBrowse link
olfactory placode formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou2f1 POU domain, class 2, transcription factor 1 IGI (MGI:3701404|PMID:17140559) MGI PMID:17140559 MGI:3701404 NCBI chr 1:165,865,150...166,002,749
Ensembl chr 1:165,865,154...166,002,678
JBrowse link
G Six1 sine oculis-related homeobox 1 IMP (MGI:3833798|PMID:19027001) UniProt PMID:19027001 MGI:3833798 NCBI chr12:73,041,827...73,046,712
Ensembl chr12:73,040,015...73,053,887
JBrowse link
G Six4 sine oculis-related homeobox 4 IMP (MGI:3833798|PMID:19027001) UniProt PMID:19027001 MGI:3833798 NCBI chr12:73,099,609...73,114,031
Ensembl chr12:73,099,609...73,113,456
JBrowse link
G Sox2 SRY (sex determining region Y)-box 2 IGI (MGI:3701404|PMID:17140559) MGI PMID:17140559 MGI:3701404 NCBI chr 3:34,649,995...34,652,461
Ensembl chr 3:34,650,405...34,652,461
JBrowse link
optic placode formation involved in camera-type eye formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 IMP (MGI:3513737|PMID:15569927) MGI PMID:15569927 MGI:3513737 NCBI chr10:117,070,127...117,148,474
Ensembl chr10:117,069,427...117,148,534
JBrowse link
G Prox1 prospero homeobox 1 IEP (PMID:11850194) BHF-UCL PMID:11850194 NCBI chr 1:190,118,035...190,170,827
Ensembl chr 1:190,118,035...190,170,714
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23387
    developmental process 7031
      anatomical structure morphogenesis 2901
        ectodermal placode morphogenesis 16
          ectodermal placode formation + 16
          olfactory placode morphogenesis + 4
Path 2
Term Annotations click to browse term
  biological_process 23387
    developmental process 7031
      anatomical structure development 6505
        anatomical structure morphogenesis 2901
          ectodermal placode morphogenesis 16
            ectodermal placode formation + 16
            olfactory placode morphogenesis + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.