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ONTOLOGY REPORT - ANNOTATIONS


Term:tumor necrosis factor superfamily cytokine production
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Accession:GO:0071706 term browser browse the term
Definition:The appearance of any member of the TNF superfamily due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.
Synonyms:exact_synonym: TNFSF cytokine production
 related_synonym: TNF superfamily production


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lymphotoxin A production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il17f interleukin 17F ISO (PMID:11591732) RGD PMID:11591732 NCBI chr 9:26,885,702...26,897,219
Ensembl chr 9:26,885,708...26,897,219
JBrowse link
negative regulation of tumor necrosis factor production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp5 acid phosphatase 5, tartrate resistant ISO
IEA
MGI:MGI:2180086 (MGI:MGI:1930064|PMID:11168643)
GO_REF:0000107
RGD
Ensembl
PMID:11168643 GO_REF:0000107, MGI:MGI:1930064 NCBI chr 8:23,142,733...23,149,067
Ensembl chr 8:23,142,734...23,148,396
JBrowse link
G Adipoq adiponectin, C1Q and collagen domain containing ISO
ISS
(PMID:10961870)
GO_REF:0000024
RGD
UniProt
PMID:10961870 GO_REF:0000024 NCBI chr11:81,330,845...81,344,488
Ensembl chr11:81,330,293...81,344,488
JBrowse link
G Adrb2 adrenoceptor beta 2 ISO RGD PMID:11096136 RGD:8548521 NCBI chr18:57,513,792...57,515,834
Ensembl chr18:57,513,793...57,515,834
JBrowse link
G Akap8 A-kinase anchoring protein 8 ISO (MGI:MGI:5763364|PMID:19531803) RGD PMID:19531803 MGI:MGI:5763364 NCBI chr 7:14,323,298...14,339,953
Ensembl chr 7:14,324,104...14,351,918
JBrowse link
G Arg2 arginase 2 ISO
IEA
(PMID:28614294)
GO_REF:0000107
(MGI:MGI:5908771|PMID:27074721)
RGD
Ensembl
PMID:27074721, PMID:28614294 GO_REF:0000107, MGI:MGI:5908771 NCBI chr 6:102,311,097...102,338,406
Ensembl chr 6:102,311,116...102,338,520
JBrowse link
G Arrb2 arrestin, beta 2 ISO (MGI:MGI:3662828|PMID:16378096) RGD PMID:16378096 MGI:MGI:3662828 NCBI chr10:57,040,252...57,048,045
Ensembl chr10:57,040,267...57,048,134
JBrowse link
G Axl Axl receptor tyrosine kinase ISO MGI:MGI:107670 (MGI:MGI:3721468|PMID:16831897) RGD PMID:16831897 MGI:MGI:3721468 NCBI chr 1:82,550,892...82,580,761
Ensembl chr 1:82,549,420...82,580,761
JBrowse link
G Bcl3 BCL3, transcription coactivator ISO (MGI:MGI:3522403|PMID:15465827) RGD PMID:15465827 MGI:MGI:3522403 NCBI chr 1:80,730,758...80,745,273
Ensembl chr 1:80,730,499...80,744,831
JBrowse link
G Bpi bactericidal/permeability-increasing protein ISO
IBA
(PMID:8409400)
PMID:21873635
RGD PMID:8409400, PMID:21873635 RGD:13792537 NCBI chr 3:154,741,627...154,768,584
Ensembl chr 3:154,741,631...154,768,640
JBrowse link
G C5ar2 complement component 5a receptor 2 ISO
ISS
(PMID:16204243)
GO_REF:0000024
RGD
UniProt
PMID:16204243 GO_REF:0000024 NCBI chr 1:78,165,155...78,183,426
Ensembl chr 1:78,166,810...78,180,216
JBrowse link
G Cactin cactin, spliceosome C complex subunit ISO (PMID:20829348) RGD PMID:20829348 NCBI chr 7:11,258,526...11,266,509
Ensembl chr 7:11,261,201...11,266,630
JBrowse link
G Cd24 CD24 molecule ISO (MGI:MGI:5913663|PMID:19264983) RGD PMID:19264983 MGI:MGI:5913663 NCBI chr20:48,335,540...48,340,847
Ensembl chr20:48,335,540...48,340,846
JBrowse link
G Cd33 CD33 molecule ISO (PMID:15597323) RGD PMID:15597323 NCBI chr 1:98,388,811...98,403,539
Ensembl chr 1:98,398,660...98,402,968
JBrowse link
G Cd34 CD34 molecule ISO
ISS
(PMID:17505307)
GO_REF:0000024
RGD
UniProt
PMID:17505307 GO_REF:0000024 NCBI chr13:113,691,842...113,711,259
Ensembl chr13:113,691,932...113,711,647
JBrowse link
G Chrna7 cholinergic receptor nicotinic alpha 7 subunit ISO
IEA
(PMID:12508119)
GO_REF:0000107
MGI:MGI:1888407 (MGI:MGI:3040787|PMID:12508119), (MGI:MGI:3721478|PMID:16785311)
RGD
Ensembl
PMID:12508119, PMID:16785311 GO_REF:0000107, MGI:MGI:3040787, MGI:MGI:3721478 NCBI chr 1:123,897,341...124,039,263
Ensembl chr 1:123,899,657...124,039,196
JBrowse link
G Cidea cell death-inducing DFFA-like effector a ISO (PMID:15919794) RGD PMID:15919794 NCBI chr18:63,082,861...63,108,450
Ensembl chr18:63,098,144...63,108,051
JBrowse link
G Clec4a C-type lectin domain family 4, member A ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 4:156,049,800...156,069,260
Ensembl chr 4:156,050,054...156,069,313
JBrowse link
G Clec4a3 C-type lectin domain family 4, member A3 ISO (PMID:18258799) RGD PMID:18258799 NCBI chr 4:155,913,366...155,923,079
Ensembl chr 4:155,913,366...155,923,079
JBrowse link
G Cx3cl1 C-X3-C motif chemokine ligand 1 ISO (PMID:10652441) RGD PMID:10652441 NCBI chr19:10,644,267...10,654,861
Ensembl chr19:10,644,244...10,653,800
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO (PMID:26435691) RGD PMID:26435691 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Errfi1 ERBB receptor feedback inhibitor 1 IMP RGD PMID:19204184 RGD:9685562 NCBI chr 5:167,951,564...167,966,011
Ensembl chr 5:167,952,728...167,966,009
JBrowse link
G Flt3 Fms related receptor tyrosine kinase 3 ISO MGI:MGI:3628823 (MGI:MGI:4452060|PMID:20457904) RGD PMID:20457904 MGI:MGI:4452060 NCBI chr12:9,360,439...9,437,004
Ensembl chr12:9,360,672...9,436,570
JBrowse link
G Foxp3 forkhead box P3 ISO MGI:MGI:3696705 (MGI:MGI:3695768|PMID:16275384) RGD PMID:16275384 MGI:MGI:3695768 NCBI chr  X:15,753,175...15,768,648
Ensembl chr  X:15,753,175...15,768,522
JBrowse link
G Gas6 growth arrest specific 6 ISS
ISO
GO_REF:0000024
(PMID:19657094), (PMID:20103767)
UniProt
RGD
PMID:19657094, PMID:20103767 GO_REF:0000024 NCBI chr16:81,213,364...81,243,824
Ensembl chr16:81,213,364...81,243,757
JBrowse link
G Ghrl ghrelin and obestatin prepropeptide IDA
ISS
ISO
GO_REF:0000024
(PMID:15232612)
UniProt
RGD
PMID:15232612, PMID:19620309 GO_REF:0000024, RGD:12905041 NCBI chr 4:145,674,157...145,678,066
Ensembl chr 4:145,674,157...145,678,066
JBrowse link
G Ghsr growth hormone secretagogue receptor IMP
ISS
ISO
GO_REF:0000024
(PMID:15232612)
UniProt
RGD
PMID:15232612, PMID:17911350 GO_REF:0000024, RGD:12907501 NCBI chr 2:113,065,953...113,071,265
Ensembl chr 2:113,066,885...113,070,261
JBrowse link
G Gpnmb glycoprotein nmb ISO (MGI:MGI:3836695|PMID:17475886) RGD PMID:17475886 MGI:MGI:3836695 NCBI chr 4:78,694,447...78,715,685
Ensembl chr 4:78,694,447...78,715,683
JBrowse link
G Gpr18 G protein-coupled receptor 18 ISO MGI:MGI:5708707 (MGI:MGI:5629467|PMID:25348153) RGD PMID:25348153 MGI:MGI:5629467 NCBI chr15:108,323,157...108,326,907
Ensembl chr15:108,323,179...108,326,907
JBrowse link
G Gstp1 glutathione S-transferase pi 1 ISO
ISS
(PMID:18962899)
(MGI:MGI:5009376|PMID:18962899), (MGI:MGI:5009411|PMID:16023107)
GO_REF:0000024
RGD
BHF-UCL
PMID:16023107, PMID:18962899 GO_REF:0000024, MGI:MGI:5009376, MGI:MGI:5009411 NCBI chr 1:219,291,679...219,294,147
Ensembl chr 1:219,291,679...219,294,147
JBrowse link
G Havcr2 hepatitis A virus cellular receptor 2 ISO UniProtKB:O00182 (PMID:25578313) RGD PMID:25578313 NCBI chr10:31,561,838...31,590,624
Ensembl chr10:31,561,895...31,588,943
JBrowse link
G Hdac3 histone deacetylase 3 IMP RGD PMID:22772764 RGD:9590127 NCBI chr18:31,073,057...31,094,347
Ensembl chr18:31,073,058...31,094,303
JBrowse link
G Hsf1 heat shock transcription factor 1 ISO MGI:MGI:2155444 (MGI:MGI:1347429|PMID:10545106) RGD PMID:10545106 MGI:MGI:1347429 NCBI chr 7:117,538,523...117,565,478
Ensembl chr 7:117,538,523...117,565,478
JBrowse link
G Igf1 insulin-like growth factor 1 IEA
ISO
GO_REF:0000107
RNAcentral:URS000034B6F5_9606 (PMID:27277332)
Ensembl
RGD
PMID:27277332 GO_REF:0000107 NCBI chr 7:28,412,123...28,491,815
Ensembl chr 7:28,412,198...28,486,609
JBrowse link
G Il10 interleukin 10 IDA
ISO
MGI:MGI:1857199 (MGI:MGI:3774790|PMID:12452830) RGD PMID:12452830, PMID:17017555 MGI:MGI:3774790, RGD:1598631 NCBI chr13:47,738,933...47,743,392
Ensembl chr13:47,739,526...47,743,392
JBrowse link
G Il27ra interleukin 27 receptor subunit alpha ISO UniProtKB:P35951 (MGI:MGI:5581894|PMID:22927332) RGD PMID:22927332 MGI:MGI:5581894 NCBI chr19:25,151,835...25,163,995
Ensembl chr19:25,149,897...25,164,086
JBrowse link
G Il4 interleukin 4 ISO
IBA
(MGI:MGI:6304699|PMID:29061364)
PMID:21873635
RGD PMID:29061364, PMID:21873635 MGI:MGI:6304699, RGD:13792537 NCBI chr10:38,963,979...38,969,531
Ensembl chr10:38,963,979...38,969,531
JBrowse link
G Ilrun inflammation and lipid regulator with UBA-like and NBR1-like domains ISO (PMID:29802199) RGD PMID:29802199 NCBI chr20:7,331,321...7,397,588
Ensembl chr20:7,331,326...7,397,448
JBrowse link
G Irak3 interleukin-1 receptor-associated kinase 3 ISO
IBA
(PMID:15728517)
PMID:21873635
(MGI:MGI:2183694|PMID:12150927)
RGD PMID:12150927, PMID:15728517, PMID:21873635 MGI:MGI:2183694, RGD:13792537 NCBI chr 7:64,922,830...64,982,224
Ensembl chr 7:64,923,615...64,982,281
JBrowse link
G Lbp lipopolysaccharide binding protein ISO
IEA
(PMID:11739189)
GO_REF:0000107
RGD
Ensembl
PMID:11739189 GO_REF:0000107 NCBI chr 3:154,786,232...154,812,910
Ensembl chr 3:154,786,215...154,813,464
JBrowse link
G Lgals9 galectin 9 ISO UniProtKB:Q8TDQ0 (PMID:25578313) RGD PMID:25578313 NCBI chr10:64,737,022...64,760,195
Ensembl chr10:64,737,022...64,760,201
JBrowse link
G Mc1r melanocortin 1 receptor ISO (PMID:10233018) RGD PMID:10233018 NCBI chr19:56,215,420...56,219,987 JBrowse link
G Nfkbil1 NFKB inhibitor like 1 ISO
ISS
(PMID:20829348)
GO_REF:0000024
RGD
UniProt
PMID:20829348 GO_REF:0000024 NCBI chr20:4,823,590...4,839,202
Ensembl chr20:4,822,935...4,839,202
JBrowse link
G Nlrc3 NLR family, CARD domain containing 3 ISO (PMID:22863753)
(MGI:MGI:5437524|PMID:22863753)
RGD PMID:22863753 MGI:MGI:5437524 NCBI chr10:11,809,531...11,844,184
Ensembl chr10:11,810,926...11,842,482
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 ISO MGI:MGI:3529594 (MGI:MGI:3839525|PMID:19139201) RGD PMID:19139201 MGI:MGI:3839525 NCBI chr19:19,342,061...19,389,366
Ensembl chr19:19,332,594...19,377,492
JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 ISO
IEA
(MGI:MGI:5707586|PMID:18972444)
GO_REF:0000107
(PMID:21242261)
RGD
Ensembl
PMID:18972444, PMID:21242261 GO_REF:0000107, MGI:MGI:5707586 NCBI chr 7:30,003,429...30,162,095
Ensembl chr 7:30,003,429...30,162,056
JBrowse link
G Orm1 orosomucoid 1 ISO (PMID:23973664) RGD PMID:23973664 NCBI chr 5:79,179,668...79,182,820
Ensembl chr 5:79,179,417...79,182,820
JBrowse link
G Pomc proopiomelanocortin ISO
IEA
(PMID:10233018)
GO_REF:0000107
RGD
Ensembl
PMID:10233018 GO_REF:0000107 NCBI chr 6:28,382,937...28,388,771
Ensembl chr 6:28,382,962...28,388,967
JBrowse link
G Ptger4 prostaglandin E receptor 4 IMP RGD PMID:15560120 RGD:10043380 NCBI chr 2:54,951,625...54,966,470
Ensembl chr 2:54,952,821...54,963,448
JBrowse link
G Ptpn22 protein tyrosine phosphatase, non-receptor type 22 ISO
IBA
(PMID:23991106)
PMID:21873635
(MGI:MGI:5640942|PMID:23991106)
RGD PMID:23991106, PMID:21873635 MGI:MGI:5640942, RGD:13792537 NCBI chr 2:206,342,066...206,390,348
Ensembl chr 2:206,342,066...206,390,348
JBrowse link
G Ptpn6 protein tyrosine phosphatase, non-receptor type 6 IEA
ISO
GO_REF:0000107
UniProtKB:P97797 (MGI:MGI:3760575|PMID:17954568)
Ensembl
RGD
PMID:17954568 GO_REF:0000107, MGI:MGI:3760575 NCBI chr 4:157,239,141...157,263,890
Ensembl chr 4:157,239,142...157,263,890
JBrowse link
G Rara retinoic acid receptor, alpha ISO (PMID:18416830) RGD PMID:18416830 NCBI chr10:86,838,819...86,884,224
Ensembl chr10:86,860,685...86,884,210
JBrowse link
G Selenos selenoprotein S ISO
IEA
(MGI:MGI:3773781|PMID:16227999)
GO_REF:0000107
RGD
Ensembl
PMID:16227999 GO_REF:0000107, MGI:MGI:3773781 NCBI chr 1:126,979,579...126,989,344
Ensembl chr 1:126,979,575...126,989,344
JBrowse link
G Sirpa signal-regulatory protein alpha ISO
IEA
(MGI:MGI:3760575|PMID:17954568)
GO_REF:0000107
RGD
Ensembl
PMID:17954568 GO_REF:0000107, MGI:MGI:3760575 NCBI chr 3:122,113,735...122,152,478
Ensembl chr 3:122,114,108...122,152,477
JBrowse link
G Sirt1 sirtuin 1 IMP RGD PMID:19299582 RGD:9585771 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
G Slamf1 signaling lymphocytic activation molecule family member 1 ISO (PMID:16317102) RGD PMID:16317102 NCBI chr13:90,184,545...90,219,170
Ensembl chr13:90,184,569...90,219,217
JBrowse link
G Syt11 synaptotagmin 11 ISO
ISS
(MGI:MGI:5468041|PMID:23303671), (MGI:MGI:5780534|PMID:25063865), (MGI:MGI:5913303|PMID:28686317)
GO_REF:0000024
RGD
UniProt
PMID:23303671, PMID:25063865, PMID:28686317 GO_REF:0000024, MGI:MGI:5468041, MGI:MGI:5780534, MGI:MGI:5913303 NCBI chr 2:188,112,301...188,138,180
Ensembl chr 2:188,112,286...188,138,177
JBrowse link
G Tlr4 toll-like receptor 4 ISO
IEA
(MGI:MGI:4421230|PMID:20051628)
GO_REF:0000107
RGD
Ensembl
PMID:20051628 GO_REF:0000107, MGI:MGI:4421230 NCBI chr 5:82,587,424...82,601,056
Ensembl chr 5:82,587,420...82,601,052
JBrowse link
G Tlr6 toll-like receptor 6 ISO ComplexPortal:CPX-1134 (MGI:MGI:5307186|PMID:22198949) RGD PMID:22198949 MGI:MGI:5307186 NCBI chr14:45,024,351...45,041,188
Ensembl chr14:45,024,351...45,046,446
JBrowse link
G Tnfaip3 TNF alpha induced protein 3 ISO (MGI:MGI:4946158|PMID:21088135) RGD PMID:21088135 MGI:MGI:4946158 NCBI chr 1:14,401,103...14,416,369
Ensembl chr 1:14,402,913...14,412,807
JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 ISO (MGI:MGI:6294162|PMID:28592261) RGD PMID:28592261 MGI:MGI:6294162 NCBI chr 9:14,611,541...14,618,076
Ensembl chr 9:14,611,561...14,618,013
JBrowse link
G Trim27 tripartite motif-containing 27 ISO (PMID:22128329) RGD PMID:22128329 NCBI chr17:45,613,863...45,626,212
Ensembl chr17:45,613,864...45,626,212
JBrowse link
G Tspo translocator protein IDA RGD PMID:14678758 RGD:2317158 NCBI chr 7:124,460,358...124,470,610
Ensembl chr 7:124,460,358...124,470,609
JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO MGI:MGI:104685 (MGI:MGI:3721468|PMID:16831897) RGD PMID:16831897 MGI:MGI:3721468 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
G Twist2 twist family bHLH transcription factor 2 ISO MGI:MGI:3044412|MGI:MGI:98872 (MGI:MGI:3721468|PMID:16831897) RGD PMID:16831897 MGI:MGI:3721468 NCBI chr 9:98,924,134...98,968,510
Ensembl chr 9:98,924,134...98,968,510
JBrowse link
G Vsir V-set immunoregulatory receptor ISO (PMID:24691993) RGD PMID:24691993 NCBI chr20:29,897,543...29,923,381
Ensembl chr20:29,897,594...29,919,998
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A ISO
ISS
(PMID:18178554)
GO_REF:0000024
(MGI:MGI:5142149|PMID:21616078)
RGD
UniProt
PMID:18178554, PMID:21616078 GO_REF:0000024, MGI:MGI:5142149 NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165
JBrowse link
negative regulation of tumor necrosis factor superfamily cytokine production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd274 CD274 molecule ISO (PMID:24187568) RGD PMID:24187568 NCBI chr 1:247,519,890...247,539,659
Ensembl chr 1:247,519,939...247,537,943
JBrowse link
positive regulation of TRAIL production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RT1-S3 RT1 class Ib, locus S3 ISO (PMID:25631937) RGD PMID:25631937 NCBI chr20:3,176,124...3,180,825
Ensembl chr20:3,176,107...3,179,818
JBrowse link
G Tnfrsf8 TNF receptor superfamily member 8 ISO (PMID:16108830) RGD PMID:16108830 NCBI chr 5:163,186,349...163,231,578
Ensembl chr 5:163,186,349...163,231,578
JBrowse link
positive regulation of tumor necrosis factor (ligand) superfamily member 11 production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam8 ADAM metallopeptidase domain 8 ISO (MGI:MGI:5009349|PMID:20683884) RGD PMID:20683884 MGI:MGI:5009349 NCBI chr 1:212,317,510...212,332,895
Ensembl chr 1:212,317,848...212,330,349
JBrowse link
G Ifng interferon gamma ISO (PMID:16220542) RGD PMID:16220542 NCBI chr 7:61,337,383...61,341,419
Ensembl chr 7:61,337,381...61,341,419
JBrowse link
positive regulation of tumor necrosis factor production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07009373.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:94,902,666...94,903,226 JBrowse link
G AABR07019870.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr13:5,480,150...5,480,629 JBrowse link
G AABR07025074.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:27,472,051...27,472,687 JBrowse link
G AABR07029613.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:40,994,237...40,994,872 JBrowse link
G AABR07035218.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr12:7,081,895...7,094,002 JBrowse link
G AABR07035501.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr12:18,220,104...18,227,991 JBrowse link
G AABR07054355.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:149,741,312...149,741,953 JBrowse link
G AABR07054358.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:149,790,856...149,791,497 JBrowse link
G AABR07060165.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:60,547,401...60,548,021 JBrowse link
G AABR07060287.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:66,091,641...66,092,259 JBrowse link
G AABR07067274.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 9:37,593,032...37,593,603 JBrowse link
G Abcc8 ATP binding cassette subfamily C member 8 IMP RGD PMID:18854840 RGD:2325137 NCBI chr 1:102,110,708...102,191,287
Ensembl chr 1:102,110,708...102,191,287
JBrowse link
G AC094217.2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:31,436,712...31,437,203 JBrowse link
G AC108595.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:132,983,472...132,984,110 JBrowse link
G Ager advanced glycosylation end product-specific receptor ISO UniProtKB:P05067 (MGI:MGI:5424311|PMID:22406537) RGD PMID:22406537 MGI:MGI:5424311 NCBI chr20:4,363,152...4,366,079
Ensembl chr20:4,363,152...4,366,079
JBrowse link
G Akap12 A-kinase anchoring protein 12 IMP RGD PMID:19937403, PMID:17873284 RGD:14348968, RGD:14348969 NCBI chr 1:40,816,130...40,906,582
Ensembl chr 1:40,816,107...40,906,581
JBrowse link
G App amyloid beta precursor protein ISO UniProtKB:Q62151 (MGI:MGI:6271381|PMID:12808450)
UniProtKB:P49768|UniProtKB:Q62151 (PMID:12808450), (PMID:22406537), (PMID:29061364)
RGD PMID:12808450, PMID:22406537, PMID:29061364 MGI:MGI:6271381 NCBI chr11:24,425,013...24,641,872
Ensembl chr11:24,425,005...24,641,858
JBrowse link
G Arfgef2 ADP ribosylation factor guanine nucleotide exchange factor 2 ISO
ISS
(PMID:17276987)
GO_REF:0000024
RGD
UniProt
PMID:17276987 GO_REF:0000024 NCBI chr 3:163,570,435...163,656,612
Ensembl chr 3:163,570,532...163,656,626
JBrowse link
G Arhgef2 Rho/Rac guanine nucleotide exchange factor 2 ISO
ISS
(PMID:21887730)
GO_REF:0000024
RGD
UniProt
PMID:21887730 GO_REF:0000024 NCBI chr 2:187,964,100...188,022,847
Ensembl chr 2:187,977,008...188,021,377
JBrowse link
G Arid5a AT-rich interaction domain 5A ISO (MGI:MGI:5887181|PMID:27671645) RGD PMID:27671645 MGI:MGI:5887181 NCBI chr 9:42,871,907...42,886,725
Ensembl chr 9:42,871,950...42,884,855
JBrowse link
G C1qtnf4 C1q and TNF related 4 ISO (PMID:21658842) RGD PMID:21658842 NCBI chr 3:79,713,580...79,718,018
Ensembl chr 3:79,713,567...79,718,025
JBrowse link
G Card9 caspase recruitment domain family, member 9 ISO MGI:MGI:3698412 (MGI:MGI:3697751|PMID:17187069) RGD PMID:17187069 MGI:MGI:3697751 NCBI chr 3:3,798,346...3,806,841
Ensembl chr 3:3,798,347...3,806,713
JBrowse link
G Ccl19 C-C motif chemokine ligand 19 ISO (MGI:MGI:3576832|PMID:15845453) RGD PMID:15845453 MGI:MGI:3576832 NCBI chr 5:58,181,025...58,182,969
Ensembl chr 5:58,181,026...58,183,017
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 IMP RGD PMID:24826069 RGD:8661667 NCBI chr10:69,412,065...69,413,863
Ensembl chr10:69,412,017...69,413,870
JBrowse link
G Ccl3 C-C motif chemokine ligand 3 ISO
ISS
UniProtKB:P22893 (MGI:MGI:5301204|PMID:21784977)
GO_REF:0000024
RGD
UniProt
PMID:21784977 GO_REF:0000024, MGI:MGI:5301204 NCBI chr10:70,869,516...70,871,066
Ensembl chr10:70,869,513...70,871,066
JBrowse link
G Ccl4 C-C motif chemokine ligand 4 IMP RGD PMID:10679105 RGD:68880 NCBI chr10:70,870,926...70,886,357
Ensembl chr10:70,884,531...70,886,355
JBrowse link
G Ccr2 C-C motif chemokine receptor 2 IMP
ISS
ISO
GO_REF:0000024
(MGI:MGI:3814510|PMID:18832716)
BHF-UCL
RGD
PMID:18832716, PMID:24826069 GO_REF:0000024, MGI:MGI:3814510, RGD:8661667
G Ccr5 C-C motif chemokine receptor 5 IMP RGD PMID:16790532 RGD:1598562 NCBI chr 8:133,192,398...133,215,599
Ensembl chr 8:133,197,032...133,215,614
JBrowse link
G Cd14 CD14 molecule ISO
ISS
(MGI:MGI:80217|PMID:8612135)
(PMID:12594207), (PMID:15294986), (PMID:8612135)
GO_REF:0000024
RGD
UniProt
PMID:8612135, PMID:12594207, PMID:15294986 GO_REF:0000024, MGI:MGI:80217 NCBI chr18:29,560,341...29,562,290
Ensembl chr18:29,560,365...29,562,153
JBrowse link
G Cd2 Cd2 molecule ISO (PMID:19109405) RGD PMID:19109405 NCBI chr 2:203,666,706...203,680,073
Ensembl chr 2:203,666,637...203,680,083
JBrowse link
G Cd36 CD36 molecule ISO MGI:MGI:2447190|MGI:MGI:3573941 (MGI:MGI:3528769|PMID:15690042), (MGI:MGI:3587138|PMID:16061696) RGD PMID:15690042, PMID:16061696 MGI:MGI:3528769, MGI:MGI:3587138 NCBI chr 4:14,150,309...14,191,498
Ensembl chr 4:14,001,761...14,249,749
JBrowse link
G Cd84 CD84 molecule ISO (MGI:MGI:5700297|PMID:20628063) RGD PMID:20628063 MGI:MGI:5700297 NCBI chr13:90,241,369...90,283,625
Ensembl chr13:90,244,681...90,277,865
JBrowse link
G Clec4m C-type lectin domain family 4 member M ISO (MGI:MGI:3027358|PMID:14707091) RGD PMID:14707091 MGI:MGI:3027358 NCBI chr12:2,817,633...2,826,303
Ensembl chr12:2,816,065...2,826,378
JBrowse link
G Clec7a C-type lectin domain containing 7A ISO
IBA
(PMID:19358895)
PMID:21873635
RGD PMID:19358895, PMID:21873635 RGD:13792537 NCBI chr 4:163,216,152...163,227,367
Ensembl chr 4:163,216,163...163,227,334
JBrowse link
G Clu clusterin ISO
ISS
IEA
(PMID:15857407)
GO_REF:0000024
GO_REF:0000107
RGD
Alzheimers_University_of_Toronto
Ensembl
PMID:15857407 GO_REF:0000024, GO_REF:0000107 NCBI chr15:42,626,612...42,665,858
Ensembl chr15:42,640,146...42,665,857
JBrowse link
G Cyba cytochrome b-245 alpha chain ISO (PMID:22423966) RGD PMID:22423966 NCBI chr19:55,249,634...55,257,824
Ensembl chr19:55,249,616...55,257,876
JBrowse link
G Cybb cytochrome b-245 beta chain IMP RGD PMID:19318376 RGD:11040691 NCBI chr  X:14,578,330...14,610,049
Ensembl chr  X:14,578,264...14,612,547
JBrowse link
G Cyp2j4 cytochrome P450, family 2, subfamily j, polypeptide 4 IMP RGD PMID:25840911 RGD:12904676 NCBI chr 5:119,546,458...119,564,843
Ensembl chr 5:119,546,461...119,564,846
JBrowse link
G Ddt D-dopachrome tautomerase ISO (PMID:21817065) RGD PMID:21817065 NCBI chr20:13,827,153...13,829,624
Ensembl chr20:13,827,132...13,831,588
JBrowse link
G Ddx58 DEXD/H-box helicase 58 ISO (PMID:21957149) RGD PMID:21957149 NCBI chr 5:56,486,584...56,536,898
Ensembl chr 5:56,500,734...56,536,772
JBrowse link
G Dhx9 DExH-box helicase 9 ISO (PMID:20696886), (PMID:21957149) RGD PMID:20696886, PMID:21957149 NCBI chr13:70,885,503...70,922,278
Ensembl chr13:70,885,504...70,922,245
JBrowse link
G Fadd Fas associated via death domain ISO (PMID:16127453) RGD PMID:16127453 NCBI chr 1:217,746,176...217,748,581
Ensembl chr 1:217,742,929...217,748,628
JBrowse link
G Fcer1g Fc fragment of IgE receptor Ig ISO MGI:MGI:1857165|MGI:MGI:2384004 (MGI:MGI:2383976|PMID:10229794), (MGI:MGI:3029067|PMID:14764707) RGD PMID:10229794, PMID:14764707 MGI:MGI:2383976, MGI:MGI:3029067 NCBI chr13:89,601,894...89,606,326
Ensembl chr13:89,601,896...89,606,326
JBrowse link
G Fcgr2a Fc fragment of IgG receptor IIa ISO MGI:MGI:1861924 (MGI:MGI:2383976|PMID:10229794) RGD PMID:10229794 MGI:MGI:2383976 NCBI chr13:91,146,878...91,163,691
Ensembl chr13:91,168,973...91,198,036
Ensembl chr13:91,168,973...91,198,036
JBrowse link
G Frmd8 FERM domain containing 8 ISO
ISS
(PMID:29897333), (PMID:29897336)
GO_REF:0000024
RGD
UniProt
PMID:29897333, PMID:29897336 GO_REF:0000024 NCBI chr 1:221,213,312...221,233,967
Ensembl chr 1:221,213,312...221,233,962
JBrowse link
G Fzd5 frizzled class receptor 5 ISO ComplexPortal:CPX-1134|UniProtKB:P22725 (MGI:MGI:5291547|PMID:21857966) RGD PMID:21857966 MGI:MGI:5291547 NCBI chr 9:71,443,784...71,445,541
Ensembl chr 9:71,443,588...71,445,739
JBrowse link
G Havcr2 hepatitis A virus cellular receptor 2 ISO (MGI:MGI:3763563|PMID:18006747)
(PMID:18006747)
RGD PMID:18006747 MGI:MGI:3763563 NCBI chr10:31,561,838...31,590,624
Ensembl chr10:31,561,895...31,588,943
JBrowse link
G Hdac1 histone deacetylase 1 IMP RGD PMID:22772764 RGD:9590127 NCBI chr 5:147,716,664...147,743,723
Ensembl chr 5:147,716,664...147,743,723
JBrowse link
G Hdac2 histone deacetylase 2 IMP RGD PMID:22772764 RGD:9590127 NCBI chr20:43,084,870...43,108,198
Ensembl chr20:43,084,870...43,108,198
JBrowse link
G Hmg1l1 high-mobility group (nonhistone chromosomal) protein 1-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:59,984,234...59,985,494
Ensembl chr19:59,984,234...59,985,494
JBrowse link
G Hmgb1 high mobility group box 1 IDA
ISO
IBA
IMP
PMID:10952726
(MGI:MGI:4367121|PMID:19890330), (MGI:MGI:5913663|PMID:19264983)
PMID:21873635
RGD PMID:19264983, PMID:19890330, PMID:10952726, PMID:21873635, PMID:22514737 MGI:MGI:4367121, MGI:MGI:5913663, RGD:10054071, RGD:13792537, RGD:10402175 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
JBrowse link
G Hmgb1-ps3 high mobility group box 1, pseudogene 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:132,982,959...132,984,167 JBrowse link
G Hspb1 heat shock protein family B (small) member 1 ISO (MGI:MGI:5050077|PMID:12385642) RGD PMID:12385642 MGI:MGI:5050077 NCBI chr12:23,839,390...23,841,051
Ensembl chr12:23,839,399...23,841,049
JBrowse link
G Hspd1 heat shock protein family D (Hsp60) member 1 IMP RGD PMID:23447644 RGD:10402845 NCBI chr 9:61,680,529...61,691,202
Ensembl chr 9:61,680,530...61,690,956
JBrowse link
G Ifih1 interferon induced with helicase C domain 1 ISO (PMID:21957149) RGD PMID:21957149 NCBI chr 3:48,557,696...48,604,097
Ensembl chr 3:48,557,696...48,604,097
JBrowse link
G Ifng interferon gamma ISO ComplexPortal:CPX-1062|UniProtKB:P05067|UniProtKB:P15261|UniProtKB:P49768 (MGI:MGI:3697769|PMID:17255335), (MGI:MGI:4942276|PMID:2502420), (MGI:MGI:4943415|PMID:1845803), (MGI:MGI:5776417|PMID:26227742), (MGI:MGI:6304699|PMID:29061364), (MGI:MGI:6305053|PMID:7715705) RGD PMID:1845803, PMID:2502420, PMID:7715705, PMID:17255335, PMID:26227742, PMID:29061364 MGI:MGI:3697769, MGI:MGI:4942276, MGI:MGI:4943415, MGI:MGI:5776417, MGI:MGI:6304699, MGI:MGI:6305053 NCBI chr 7:61,337,383...61,341,419
Ensembl chr 7:61,337,381...61,341,419
JBrowse link
G Ifngr1 interferon gamma receptor 1 ISO UniProtKB:P01579 (MGI:MGI:3697769|PMID:17255335) RGD PMID:17255335 MGI:MGI:3697769 NCBI chr 1:15,062,380...15,080,815
Ensembl chr 1:15,062,432...15,080,907
JBrowse link
G Il12b interleukin 12B ISO (PMID:16751425) RGD PMID:16751425 NCBI chr10:30,034,447...30,048,774
Ensembl chr10:30,038,709...30,048,085
JBrowse link
G Il17a interleukin 17A ISO (PMID:29734196) RGD PMID:29734196 NCBI chr 9:26,841,299...26,844,786
Ensembl chr 9:26,841,299...26,844,786
JBrowse link
G Il18 interleukin 18 IMP RGD PMID:17623049 RGD:4889480 NCBI chr 8:55,009,666...55,016,286
Ensembl chr 8:54,993,859...55,016,299
JBrowse link
G Il1a interleukin 1 alpha IMP PMID:31172560 ARUK-UCL PMID:31172560 RGD:15023467 NCBI chr 3:121,824,712...121,836,122
Ensembl chr 3:121,825,412...121,836,086
JBrowse link
G Il23a interleukin 23 subunit alpha ISO (PMID:16751425) RGD PMID:16751425 NCBI chr 7:2,710,609...2,712,723
Ensembl chr 7:2,710,609...2,712,723
JBrowse link
G Il33 interleukin 33 ISO (MGI:MGI:6414704|PMID:26936882) RGD PMID:26936882 MGI:MGI:6414704 NCBI chr 1:248,112,611...248,147,030
Ensembl chr 1:248,132,090...248,147,029
JBrowse link
G Il6 interleukin 6 ISO RNAcentral:URS00004E0808_9606 (PMID:31886314) RGD PMID:31886314 NCBI chr 4:3,043,231...3,047,807
Ensembl chr 4:3,043,231...3,047,807
JBrowse link
G Isl1 ISL LIM homeobox 1 ISO (MGI:MGI:5437583|PMID:22727192) RGD PMID:22727192 MGI:MGI:5437583 NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
JBrowse link
G Jak2 Janus kinase 2 ISO UniProtKB:P01580 (MGI:MGI:5009182|PMID:12426001), (MGI:MGI:5776417|PMID:26227742) RGD PMID:12426001, PMID:26227742 MGI:MGI:5009182, MGI:MGI:5776417 NCBI chr 1:247,398,667...247,457,521
Ensembl chr 1:247,398,598...247,458,509
JBrowse link
G Lbp lipopolysaccharide binding protein ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000107
PMID:21873635
MGI:MGI:1857975 (MGI:MGI:1097829|PMID:9338787), (MGI:MGI:3719540|PMID:12055258), (MGI:MGI:3807766|PMID:12932360), (MGI:MGI:5645195|PMID:24380872)
(PMID:12594207), (PMID:24120359), (PMID:8409400)
UniProt
Ensembl
RGD
PMID:8409400, PMID:9338787, PMID:12055258, PMID:12594207, PMID:12932360, PMID:24120359, PMID:24380872, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:MGI:1097829, MGI:MGI:3719540, MGI:MGI:3807766, MGI:MGI:5645195, RGD:13792537 NCBI chr 3:154,786,232...154,812,910
Ensembl chr 3:154,786,215...154,813,464
JBrowse link
G Lep leptin ISO
ISS
(MGI:MGI:3690675|PMID:9438411)
GO_REF:0000024
RGD
UniProt
PMID:9438411 GO_REF:0000024, MGI:MGI:3690675 NCBI chr 4:56,337,695...56,351,818
Ensembl chr 4:56,337,695...56,351,818
JBrowse link
G Lgals9 galectin 9 ISO (MGI:MGI:5645190|PMID:25158758)
(PMID:20209097)
RGD PMID:20209097, PMID:25158758 MGI:MGI:5645190 NCBI chr10:64,737,022...64,760,195
Ensembl chr10:64,737,022...64,760,201
JBrowse link
G Lilra5 leukocyte immunoglobulin like receptor A5 ISO (PMID:12393390), (PMID:19009525) RGD PMID:12393390, PMID:19009525 NCBI chr 1:73,655,767...73,682,232
Ensembl chr 1:73,656,028...73,682,247
JBrowse link
G LOC100361826 sialophorin-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:18,269,558...18,274,549
Ensembl chr12:18,269,558...18,274,515
JBrowse link
G LOC100911637 high mobility group protein B1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:149,741,055...149,741,953 JBrowse link
G LOC108349189 high mobility group protein B1 pseudogene IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:115,351,012...115,351,755
Ensembl chr  X:115,351,114...115,351,755
JBrowse link
G LOC108350839 high mobility group protein B1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:92,431,517...92,432,354
Ensembl chr 4:92,431,710...92,432,354
JBrowse link
G LOC288521 similar to Leukosialin precursor (Leucocyte sialoglycoprotein) (Sialophorin) (CD43) (W3/13 antigen) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:18,291,901...18,303,041
Ensembl chr12:18,291,901...18,303,041
JBrowse link
G LOC690521 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:149,790,599...149,791,497 JBrowse link
G Lpl lipoprotein lipase ISO RNAcentral:URS00005C83FD_10090 (MGI:MGI:6282927|PMID:22963823) RGD PMID:22963823 MGI:MGI:6282927 NCBI chr16:22,537,687...22,561,487
Ensembl chr16:22,537,056...22,561,496
JBrowse link
G Lrrfip2 LRR binding FLII interacting protein 2 ISO (MGI:MGI:3836337|PMID:19265123) RGD PMID:19265123 MGI:MGI:3836337 NCBI chr 8:119,381,666...119,484,125
Ensembl chr 8:119,382,011...119,483,043
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 IMP RGD PMID:22302802 RGD:13462052 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584
JBrowse link
G Ly96 lymphocyte antigen 96 ISO (MGI:MGI:5645195|PMID:24380872) RGD PMID:24380872 MGI:MGI:5645195 NCBI chr 5:1,972,212...1,989,448 JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 ISO (MGI:MGI:5532755|PMID:24020373) RGD PMID:24020373 MGI:MGI:5532755 NCBI chr13:47,785,157...47,871,684
Ensembl chr13:47,785,161...47,831,110
JBrowse link
G Mavs mitochondrial antiviral signaling protein ISS
ISO
GO_REF:0000024
(PMID:16127453), (PMID:21957149)
UniProt
RGD
PMID:16127453, PMID:21957149 GO_REF:0000024 NCBI chr 3:123,776,147...123,790,572
Ensembl chr 3:123,776,181...123,790,567
JBrowse link
G MGC112692 similar to Leukosialin precursor (Leucocyte sialoglycoprotein) (Sialophorin) (CD43) (W3/13 antigen) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:18,280,858...18,286,468
Ensembl chr12:18,264,361...18,286,426
JBrowse link
G Mif macrophage migration inhibitory factor ISO (PMID:21817065) RGD PMID:21817065 NCBI chr20:13,715,219...13,732,980
Ensembl chr20:13,732,198...13,732,859
JBrowse link
G Mmp8 matrix metallopeptidase 8 ISO
IMP
(MGI:MGI:6201889|PMID:25049354) RGD PMID:25049354, PMID:25049354 MGI:MGI:6201889, RGD:13792525 NCBI chr 8:5,768,808...5,777,741
Ensembl chr 8:5,768,811...5,778,702
JBrowse link
G Myd88 MYD88, innate immune signal transduction adaptor ISO MGI:MGI:2147032|MGI:MGI:2385681 (MGI:MGI:2670551|PMID:12872135), (MGI:MGI:3042099|PMID:12719478), (MGI:MGI:3619313|PMID:11067888), (MGI:MGI:3640248|PMID:10607756) RGD PMID:10607756, PMID:11067888, PMID:12719478, PMID:12872135 MGI:MGI:2670551, MGI:MGI:3042099, MGI:MGI:3619313, MGI:MGI:3640248 NCBI chr 8:128,022,512...128,027,462
Ensembl chr 8:128,022,473...128,026,841
JBrowse link
G Ncl nucleolin IMP RGD PMID:21309751 RGD:9686449 NCBI chr 9:93,369,119...93,377,643
Ensembl chr 9:93,368,932...93,377,643
JBrowse link
G Nfatc4 nuclear factor of activated T-cells 4 ISO (MGI:MGI:3709926|PMID:17242187) RGD PMID:17242187 MGI:MGI:3709926 NCBI chr15:34,493,163...34,502,238
Ensembl chr15:34,493,138...34,504,326
JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 ISO
IMP
MGI:MGI:2429397|MGI:MGI:2674231 (MGI:MGI:3775161|PMID:18261938) RGD PMID:18261938, PMID:22450316 MGI:MGI:3775161, RGD:9831170 NCBI chr 4:85,123,965...85,175,206
Ensembl chr 4:85,123,960...85,174,951
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 ISO (PMID:17187069), (PMID:21040358)
MGI:MGI:1341839|MGI:MGI:2680581|MGI:MGI:3529594 (MGI:MGI:3050756|PMID:15220916), (MGI:MGI:3775161|PMID:18261938)
RGD PMID:15220916, PMID:17187069, PMID:18261938, PMID:21040358 MGI:MGI:3050756, MGI:MGI:3775161 NCBI chr19:19,342,061...19,389,366
Ensembl chr19:19,332,594...19,377,492
JBrowse link
G Orm1 orosomucoid 1 ISO (PMID:8774350) RGD PMID:8774350 NCBI chr 5:79,179,668...79,182,820
Ensembl chr 5:79,179,417...79,182,820
JBrowse link
G Pf4 platelet factor 4 ISO (PMID:10666185) RGD PMID:10666185 NCBI chr14:18,848,549...18,849,258
Ensembl chr14:18,848,549...18,849,258
JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 ISO
IEA
(MGI:MGI:3709926|PMID:17242187)
GO_REF:0000107
RGD
Ensembl
PMID:17242187 GO_REF:0000107, MGI:MGI:3709926 NCBI chr 2:31,742,326...31,826,882
Ensembl chr 2:31,745,088...31,826,867
JBrowse link
G Psen1 presenilin 1 ISO UniProtKB:P05067 (PMID:29061364) RGD PMID:29061364 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
JBrowse link
G Ptafr platelet-activating factor receptor IMP RGD PMID:2545780 RGD:10043183 NCBI chr 5:150,746,284...150,775,675
Ensembl chr 5:150,754,021...150,775,672
JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 ISO UniProtKB:P97797 (MGI:MGI:3760575|PMID:17954568) RGD PMID:17954568 MGI:MGI:3760575 NCBI chr12:40,895,515...40,955,999
Ensembl chr12:40,895,515...40,955,999
JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C ISO UniProtKB:Q64455 (MGI:MGI:3774343|PMID:18249142) RGD PMID:18249142 MGI:MGI:3774343 NCBI chr13:55,061,561...55,174,150
Ensembl chr13:55,061,562...55,173,692
JBrowse link
G Ptprj protein tyrosine phosphatase, receptor type, J ISO UniProtKB:P06800 (MGI:MGI:3774343|PMID:18249142) RGD PMID:18249142 MGI:MGI:3774343 NCBI chr 3:79,233,519...79,390,956
Ensembl chr 3:79,233,525...79,390,956
JBrowse link
G Pycard PYD and CARD domain containing ISO (PMID:16982856), (PMID:21487011) RGD PMID:16982856, PMID:21487011 NCBI chr 1:199,438,029...199,439,062
Ensembl chr 1:199,437,832...199,439,210
JBrowse link
G Rasgrp1 RAS guanyl releasing protein 1 ISO (PMID:19933860) RGD PMID:19933860 NCBI chr 3:108,984,029...109,044,420
Ensembl chr 3:108,984,029...109,044,420
JBrowse link
G RGD1563668 similar to High mobility group protein 1 (HMG-1) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:40,994,237...40,994,990 JBrowse link
G RGD1565762 similar to High mobility group protein 1 (HMG-1) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:5,480,069...5,480,782 JBrowse link
G Ripk1 receptor interacting serine/threonine kinase 1 ISO (PMID:16127453) RGD PMID:16127453 NCBI chr17:31,537,580...31,569,904
Ensembl chr17:31,537,591...31,569,904
JBrowse link
G Ripk2 receptor-interacting serine-threonine kinase 2 ISO MGI:MGI:2660793 (MGI:MGI:2176422|PMID:11894098), (MGI:MGI:3775161|PMID:18261938), (MGI:MGI:5543891|PMID:21887730) RGD PMID:11894098, PMID:18261938, PMID:21887730 MGI:MGI:2176422, MGI:MGI:3775161, MGI:MGI:5543891 NCBI chr 5:29,838,713...29,870,390
Ensembl chr 5:29,838,747...29,870,735
JBrowse link
G RT1-S3 RT1 class Ib, locus S3 ISO (PMID:25631937) RGD PMID:25631937 NCBI chr20:3,176,124...3,180,825
Ensembl chr20:3,176,107...3,179,818
JBrowse link
G Sash3 SAM and SH3 domain containing 3 ISO MGI:MGI:3716944 (MGI:MGI:3607020|PMID:16227612) RGD PMID:16227612 MGI:MGI:3607020 NCBI chr  X:134,979,637...134,994,351
Ensembl chr  X:134,979,646...134,994,349
JBrowse link
G Selenok selenoprotein K IEA
ISO
GO_REF:0000107
(MGI:MGI:4939970|PMID:21220695)
Ensembl
RGD
PMID:21220695 GO_REF:0000107, MGI:MGI:4939970 NCBI chr16:6,035,926...6,044,240
Ensembl chr16:6,035,926...6,044,239
JBrowse link
G Spn sialophorin ISO
IBA
MGI:MGI:1857246 (MGI:MGI:1861065|PMID:10899905)
PMID:21873635
(PMID:10899905)
RGD PMID:10899905, PMID:21873635 MGI:MGI:1861065, RGD:13792537 NCBI chr 1:198,572,999...198,585,664
Ensembl chr 1:198,572,999...198,577,226
JBrowse link
G Spon2 spondin 2 ISO MGI:MGI:3026870 (MGI:MGI:2686801|PMID:14691481) RGD PMID:14691481 MGI:MGI:2686801 NCBI chr14:82,815,158...82,824,529
Ensembl chr14:82,818,663...82,824,599
JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO RNAcentral:URS00004E0808_9606|UniProtKB:P05231 (PMID:31886314) RGD PMID:31886314 NCBI chr10:88,790,401...88,842,263
Ensembl chr10:88,790,408...88,842,233
JBrowse link
G Syk spleen associated tyrosine kinase ISO (PMID:19358895) RGD PMID:19358895 NCBI chr17:12,614,311...12,669,568
Ensembl chr17:12,614,311...12,669,573
JBrowse link
G Thbs1 thrombospondin 1 ISO (PMID:18726995) RGD PMID:18726995 NCBI chr 3:109,862,120...109,873,466
Ensembl chr 3:109,862,117...109,873,466
JBrowse link
G Ticam1 toll-like receptor adaptor molecule 1 ISO MGI:MGI:108005|MGI:MGI:2679794|MGI:MGI:3029019 (MGI:MGI:2669022|PMID:12855817), (MGI:MGI:2670551|PMID:12872135) RGD PMID:12855817, PMID:12872135 MGI:MGI:2669022, MGI:MGI:2670551 NCBI chr 9:10,780,185...10,790,280 JBrowse link
G Tirap TIR domain containing adaptor protein ISO (PMID:16301656), (PMID:19509286)
MGI:MGI:3573942 (MGI:MGI:3528769|PMID:15690042), (MGI:MGI:3531416|PMID:12447442), (MGI:MGI:3713420|PMID:16301656)
RGD PMID:12447442, PMID:15690042, PMID:16301656, PMID:19509286 MGI:MGI:3528769, MGI:MGI:3531416, MGI:MGI:3713420 NCBI chr 8:36,382,029...36,399,625
Ensembl chr 8:36,385,353...36,388,224
JBrowse link
G Tlr1 toll-like receptor 1 ISO (MGI:MGI:3609367|PMID:12077222) RGD PMID:12077222 MGI:MGI:3609367 NCBI chr14:45,062,662...45,065,014
Ensembl chr14:45,062,662...45,081,991
JBrowse link
G Tlr2 toll-like receptor 2 ISO ComplexPortal:CPX-1134|MGI:MGI:2178675|MGI:MGI:2674036 (MGI:MGI:2178646|PMID:10549626), (MGI:MGI:3042099|PMID:12719478), (MGI:MGI:3528769|PMID:15690042), (MGI:MGI:3611539|PMID:16239543), (MGI:MGI:3619313|PMID:11067888), (MGI:MGI:4456948|PMID:15356140), (MGI:MGI:5307186|PMID:22198949) RGD PMID:10549626, PMID:11067888, PMID:12719478, PMID:15356140, PMID:15690042, PMID:16239543, PMID:22198949 MGI:MGI:2178646, MGI:MGI:3042099, MGI:MGI:3528769, MGI:MGI:3611539, MGI:MGI:3619313, MGI:MGI:4456948, MGI:MGI:5307186 NCBI chr 2:182,840,171...182,846,061
Ensembl chr 2:182,840,727...182,846,061
JBrowse link
G Tlr3 toll-like receptor 3 ISO MGI:MGI:2653138 (MGI:MGI:3697006|PMID:17008311), (MGI:MGI:4456948|PMID:15356140) RGD PMID:15356140, PMID:17008311 MGI:MGI:3697006, MGI:MGI:4456948 NCBI chr16:50,016,466...50,031,011
Ensembl chr16:50,016,857...50,031,214
JBrowse link
G Tlr4 toll-like receptor 4 ISO
IEA
MGI:MGI:1857718|MGI:MGI:1860755|MGI:MGI:1860885 (MGI:MGI:1351361|PMID:10623794), (MGI:MGI:2178646|PMID:10549626), (MGI:MGI:2686801|PMID:14691481), (MGI:MGI:3640248|PMID:10607756), (MGI:MGI:3775161|PMID:18261938), (MGI:MGI:4456948|PMID:15356140)
GO_REF:0000107
(PMID:17951129), (PMID:30321456)
RGD
Ensembl
PMID:10549626, PMID:10607756, PMID:10623794, PMID:14691481, PMID:15356140, PMID:17951129, PMID:18261938, PMID:30321456 GO_REF:0000107, MGI:MGI:1351361, MGI:MGI:2178646, MGI:MGI:2686801, MGI:MGI:3640248, MGI:MGI:3775161, MGI:MGI:4456948 NCBI chr 5:82,587,424...82,601,056
Ensembl chr 5:82,587,420...82,601,052
JBrowse link
G Tlr9 toll-like receptor 9 ISO (MGI:MGI:4456948|PMID:15356140) RGD PMID:15356140 MGI:MGI:4456948 NCBI chr 8:114,916,122...114,920,171
Ensembl chr 8:114,916,122...114,920,171
JBrowse link
G Tnfrsf1a TNF receptor superfamily member 1A IMP RGD PMID:20967881 RGD:5130945 NCBI chr 4:157,864,905...157,877,634
Ensembl chr 4:157,864,969...157,877,633
JBrowse link
G Tnfrsf8 TNF receptor superfamily member 8 ISO (PMID:16108830) RGD PMID:16108830 NCBI chr 5:163,186,349...163,231,578
Ensembl chr 5:163,186,349...163,231,578
JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO (PMID:20007935) RGD PMID:20007935 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
G Tyrobp transmembrane immune signaling adaptor Tyrobp ISO
IBA
(MGI:MGI:5638298|PMID:25690660)
PMID:21873635
RGD PMID:25690660, PMID:21873635 MGI:MGI:5638298, RGD:13792537 NCBI chr 1:88,875,370...88,879,305
Ensembl chr 1:88,875,375...88,879,303
JBrowse link
G Wnt5a Wnt family member 5A ISO ComplexPortal:CPX-1134|UniProtKB:Q9EQD0 (MGI:MGI:5291547|PMID:21857966) RGD PMID:21857966 MGI:MGI:5291547 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
G Zbtb20 zinc finger and BTB domain containing 20 ISO (MGI:MGI:5619432|PMID:23776228) RGD PMID:23776228 MGI:MGI:5619432 NCBI chr11:62,014,925...62,561,113
Ensembl chr11:62,014,925...62,451,184
JBrowse link
G Zfp64 zinc finger protein 64 ISO (MGI:MGI:5619431|PMID:23857586) RGD PMID:23857586 MGI:MGI:5619431 NCBI chr 3:165,713,070...165,741,932
Ensembl chr 3:165,713,020...165,741,967
JBrowse link
regulation of tumor necrosis factor production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angpt1 angiopoietin 1 ISO
IEA
(MGI:MGI:4437182|PMID:20060382)
GO_REF:0000107
RGD
Ensembl
PMID:20060382 GO_REF:0000107, MGI:MGI:4437182 NCBI chr 7:81,338,327...81,592,459
Ensembl chr 7:81,342,280...81,592,206
JBrowse link
G Card9 caspase recruitment domain family, member 9 ISO MGI:MGI:3663486 (MGI:MGI:3654747|PMID:16862125) RGD PMID:16862125 MGI:MGI:3654747 NCBI chr 3:3,798,346...3,806,841
Ensembl chr 3:3,798,347...3,806,713
JBrowse link
G Cd300ld Cd300 molecule-like family member D ISO (MGI:MGI:3721207|PMID:17543387) RGD PMID:17543387 MGI:MGI:3721207 NCBI chr10:104,847,315...104,895,630 JBrowse link
G Cd47 Cd47 molecule ISO (PMID:11509594) RGD PMID:11509594 NCBI chr11:53,511,485...53,575,754
Ensembl chr11:53,514,595...53,575,175
JBrowse link
G Cx3cr1 C-X3-C motif chemokine receptor 1 ISO UniProtKB:P05067 (MGI:MGI:6162390|PMID:23499256) RGD PMID:23499256 MGI:MGI:6162390 NCBI chr 8:128,740,756...128,754,514
Ensembl chr 8:128,740,756...128,754,514
JBrowse link
G Fcgr2a Fc fragment of IgG receptor IIa IMP RGD PMID:22184119 RGD:11041001 NCBI chr13:91,146,878...91,163,691
Ensembl chr13:91,168,973...91,198,036
Ensembl chr13:91,168,973...91,198,036
JBrowse link
G Foxp1 forkhead box P1 ISO (PMID:18799727) RGD PMID:18799727 NCBI chr 4:131,362,178...131,963,466
Ensembl chr 4:131,366,744...131,694,755
JBrowse link
G Ltf lactotransferrin ISO (PMID:20345905) RGD PMID:20345905 NCBI chr 8:119,290,416...119,313,261
Ensembl chr 8:119,290,416...119,313,261
JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 ISO (PMID:15014438)
(MGI:MGI:1352048|PMID:10559880)
RGD PMID:10559880, PMID:15014438 MGI:MGI:1352048 NCBI chr13:47,785,157...47,871,684
Ensembl chr13:47,785,161...47,831,110
JBrowse link
G Myd88 MYD88, innate immune signal transduction adaptor ISO MGI:MGI:4421295 (MGI:MGI:5637650|PMID:25084278) RGD PMID:25084278 MGI:MGI:5637650 NCBI chr 8:128,022,512...128,027,462
Ensembl chr 8:128,022,473...128,026,841
JBrowse link
G Sirpa signal-regulatory protein alpha IMP
ISO
PMID:16055727
UniProtKB:Q08722 (PMID:11509594)
RGD PMID:11509594, PMID:16055727 RGD:13792550 NCBI chr 3:122,113,735...122,152,478
Ensembl chr 3:122,114,108...122,152,477
JBrowse link
G Tbc1d23 TBC1 domain family, member 23 ISO MGI:MGI:3857844 (MGI:MGI:5314289|PMID:22312129) RGD PMID:22312129 MGI:MGI:5314289 NCBI chr11:45,401,396...45,459,841
Ensembl chr11:45,401,403...45,459,821
JBrowse link
G Tlr4 toll-like receptor 4 IMP RGD PMID:24199847 RGD:12910488 NCBI chr 5:82,587,424...82,601,056
Ensembl chr 5:82,587,420...82,601,052
JBrowse link
G Tnfsf18 TNF superfamily member 18 NOT ISO (MGI:MGI:5551556|PMID:24107315) RGD PMID:24107315 MGI:MGI:5551556 NCBI chr13:79,378,412...79,388,687
Ensembl chr13:79,378,733...79,388,498
JBrowse link
G Trex1 three prime repair exonuclease 1 ISO MGI:MGI:3052754 (MGI:MGI:5554502|PMID:24218451) RGD PMID:24218451 MGI:MGI:5554502 NCBI chr 8:117,796,127...117,797,427
Ensembl chr 8:117,796,128...117,797,427
JBrowse link
G Ube2j1 ubiquitin-conjugating enzyme E2, J1 ISO MGI:MGI:109298 (MGI:MGI:5532755|PMID:24020373) RGD PMID:24020373 MGI:MGI:5532755 NCBI chr 5:48,274,387...48,292,699
Ensembl chr 5:48,274,477...48,290,658
JBrowse link
G Zfp36 zinc finger protein 36 ISO
ISS
(PMID:15014438)
GO_REF:0000024
RGD
UniProt
PMID:15014438 GO_REF:0000024 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
tumor necrosis factor production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G App amyloid beta precursor protein ISO UniProtKB:P49768|UniProtKB:Q9QUN7 (PMID:22198949) RGD PMID:22198949 NCBI chr11:24,425,013...24,641,872
Ensembl chr11:24,425,005...24,641,858
JBrowse link
G Azi2 5-azacytidine induced 2 ISO
IEA
MGI:MGI:5544312 (MGI:MGI:5543352|PMID:23610142)
GO_REF:0000107
RGD
Ensembl
PMID:23610142 GO_REF:0000107, MGI:MGI:5543352 NCBI chr 8:126,411,030...126,435,581
Ensembl chr 8:126,411,829...126,434,579
JBrowse link
G Tlr2 toll-like receptor 2 ISO UniProtKB:P05067|UniProtKB:P49768 (MGI:MGI:5307186|PMID:22198949) RGD PMID:22198949 MGI:MGI:5307186 NCBI chr 2:182,840,171...182,846,061
Ensembl chr 2:182,840,727...182,846,061
JBrowse link
G Tlr9 toll-like receptor 9 ISO
IBA
(PMID:23826189)
PMID:21873635
(MGI:MGI:3828189|PMID:18931679)
RGD PMID:18931679, PMID:23826189, PMID:21873635 MGI:MGI:3828189, RGD:13792537 NCBI chr 8:114,916,122...114,920,171
Ensembl chr 8:114,916,122...114,920,171
JBrowse link
G Wdr83 WD repeat domain 83 IEA
ISO
GO_REF:0000107
MGI:MGI:4367006 (MGI:MGI:6282238|PMID:29402223)
Ensembl
RGD
PMID:29402223 GO_REF:0000107, MGI:MGI:6282238 NCBI chr19:26,188,644...26,194,193
Ensembl chr19:26,188,638...26,194,198
JBrowse link
G Zg16 zymogen granule protein 16 ISO MGI:MGI:3529206 (MGI:MGI:5824939|PMID:27849619) RGD PMID:27849619 MGI:MGI:5824939 NCBI chr 1:198,483,800...198,486,157
Ensembl chr 1:198,483,805...198,486,157
JBrowse link
tumor necrosis factor secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgb1 high mobility group box 1 ISO (PMID:12765338) RGD PMID:12765338 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
JBrowse link
G Sphk2 sphingosine kinase 2 ISO (MGI:MGI:3703830|PMID:17346996) RGD PMID:17346996 MGI:MGI:3703830 NCBI chr 1:101,692,972...101,700,604
Ensembl chr 1:101,692,973...101,697,277
JBrowse link
G Tmem106a transmembrane protein 106A ISS
ISO
GO_REF:0000024
(MGI:MGI:6216178|PMID:26215746)
UniProt
RGD
PMID:26215746 GO_REF:0000024, MGI:MGI:6216178 NCBI chr10:89,484,269...89,493,288
Ensembl chr10:89,484,468...89,493,283
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    multicellular organismal process 9068
      cytokine production 838
        tumor necrosis factor superfamily cytokine production 204
          TRAIL production + 2
          lymphotoxin A production + 1
          negative regulation of tumor necrosis factor superfamily cytokine production + 67
          positive regulation of tumor necrosis factor superfamily cytokine production + 127
          regulation of tumor necrosis factor superfamily cytokine production + 198
          tumor necrosis factor (ligand) superfamily member 11 production + 2
          tumor necrosis factor production + 201
Path 2
Term Annotations click to browse term
  biological_process 20027
    metabolic process 12278
      organic substance metabolic process 11660
        macromolecule metabolic process 10098
          gene expression 6294
            cytokine production 838
              tumor necrosis factor superfamily cytokine production 204
                TRAIL production + 2
                lymphotoxin A production + 1
                negative regulation of tumor necrosis factor superfamily cytokine production + 67
                positive regulation of tumor necrosis factor superfamily cytokine production + 127
                regulation of tumor necrosis factor superfamily cytokine production + 198
                tumor necrosis factor (ligand) superfamily member 11 production + 2
                tumor necrosis factor production + 201
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.