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ONTOLOGY REPORT - ANNOTATIONS


Term:basement membrane organization
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Accession:GO:0071711 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the basement membrane.
Comment:Note that this term has no relationship to 'membrane organization ; GO:0061024' because the basement membrane is not a lipid bilayer.
Synonyms:exact_synonym: basement membrane organisation


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basement membrane organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cav1 caveolin 1 IEA
ISO
GO_REF:0000107
MGI:MGI:2180364 (MGI:MGI:2176684|PMID:11884617)
Ensembl
RGD
PMID:11884617 GO_REF:0000107, MGI:MGI:2176684 NCBI chr 4:44,597,123...44,630,206
Ensembl chr 4:44,597,123...44,630,200
JBrowse link
G Cav2 caveolin 2 IEA
ISO
GO_REF:0000107
MGI:MGI:2180372 (MGI:MGI:2176684|PMID:11884617)
Ensembl
RGD
PMID:11884617 GO_REF:0000107, MGI:MGI:2176684 NCBI chr 4:44,573,264...44,580,640
Ensembl chr 4:44,573,264...44,580,638
JBrowse link
G Col4a1 collagen type IV alpha 1 chain ISO (PMID:18160688), (PMID:19949034), (PMID:23065703) RGD PMID:18160688, PMID:19949034, PMID:23065703 NCBI chr16:83,522,162...83,632,153
Ensembl chr16:83,522,162...83,632,153
JBrowse link
G Dag1 dystroglycan 1 ISO MGI:MGI:1934902 (MGI:MGI:5470500|PMID:23217742) RGD PMID:23217742 MGI:MGI:5470500 NCBI chr 8:116,980,501...116,993,182
Ensembl chr 8:116,980,497...116,993,193
JBrowse link
G Ext1 exostosin glycosyltransferase 1 ISO (MGI:MGI:5766597|PMID:26024086) RGD PMID:26024086 MGI:MGI:5766597 NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
JBrowse link
G Fermt1 fermitin family member 1 ISO (MGI:MGI:5571208|PMID:24681597) RGD PMID:24681597 MGI:MGI:5571208 NCBI chr 3:125,566,744...125,607,864
Ensembl chr 3:125,566,643...125,607,735
JBrowse link
G Flrt2 fibronectin leucine rich transmembrane protein 2 ISO
ISS
(MGI:MGI:4950310|PMID:21350012)
GO_REF:0000024
RGD
UniProt
PMID:21350012 GO_REF:0000024, MGI:MGI:4950310 NCBI chr 6:119,518,459...119,613,534
Ensembl chr 6:119,519,714...119,609,296
JBrowse link
G Fshr follicle stimulating hormone receptor ISO MGI:MGI:2384087 (MGI:MGI:1313058|PMID:9811848) RGD PMID:9811848 MGI:MGI:1313058 NCBI chr 6:12,796,383...12,997,817
Ensembl chr 6:12,796,383...12,997,817
JBrowse link
G Gas2 growth arrest-specific 2 ISO MGI:MGI:6187669 (MGI:MGI:6102554|PMID:27734842) RGD PMID:27734842 MGI:MGI:6102554 NCBI chr 1:107,234,389...107,363,624
Ensembl chr 1:107,262,659...107,363,788
JBrowse link
G Itgb1 integrin subunit beta 1 IEA
ISO
GO_REF:0000107
(MGI:MGI:5571208|PMID:24681597)
Ensembl
RGD
PMID:24681597 GO_REF:0000107, MGI:MGI:5571208 NCBI chr19:61,677,512...61,725,537
Ensembl chr19:61,677,542...61,725,535
JBrowse link
G Mmp11 matrix metallopeptidase 11 ISO MGI:MGI:2387934 (MGI:MGI:3822602|PMID:18622425) RGD PMID:18622425 MGI:MGI:3822602 NCBI chr20:13,670,051...13,678,834
Ensembl chr20:13,670,066...13,678,089
JBrowse link
G Pmp22 peripheral myelin protein 22 ISO MGI:MGI:3614822 (MGI:MGI:3613258|PMID:16436605) RGD PMID:16436605 MGI:MGI:3613258 NCBI chr10:49,538,588...49,568,583
Ensembl chr10:49,538,588...49,568,583
JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A ISO
IEA
MGI:MGI:3608888 (MGI:MGI:4849883|PMID:21069829)
GO_REF:0000107
RGD
Ensembl
PMID:21069829 GO_REF:0000107, MGI:MGI:4849883 NCBI chr 1:213,606,599...213,612,905
Ensembl chr 1:213,606,599...213,612,904
JBrowse link
G Spint2 serine peptidase inhibitor, Kunitz type, 2 ISO MGI:MGI:2156187 (MGI:MGI:4360135|PMID:19592578) RGD PMID:19592578 MGI:MGI:4360135 NCBI chr 1:87,199,373...87,221,826
Ensembl chr 1:87,199,313...87,221,892
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO MGI:MGI:2183192 (MGI:MGI:3610667|PMID:16186342) RGD PMID:16186342 MGI:MGI:3610667 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
basement membrane assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb1 laminin subunit beta 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:50,528,796...50,596,593
Ensembl chr 6:50,528,823...50,596,079
JBrowse link
G Lamb2 laminin subunit beta 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:117,268,335...117,280,517
Ensembl chr 8:117,268,337...117,280,517
JBrowse link
G Lamb3 laminin subunit beta 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:112,031,614...112,073,187
Ensembl chr13:112,031,594...112,073,186
JBrowse link
G Ntn4 netrin 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:34,533,543...34,649,330
Ensembl chr 7:34,533,543...34,649,481
JBrowse link
G Ntng1 netrin G1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:212,695,464...213,073,046
Ensembl chr 2:212,696,624...212,852,870
JBrowse link
G Ntng2 netrin G2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:7,742,511...7,800,834
Ensembl chr 3:7,742,531...7,796,385
JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 ISO MGI:MGI:3620600|MGI:MGI:3620601|MGI:MGI:3620603 (MGI:MGI:3618677|PMID:16467571) RGD PMID:16467571 MGI:MGI:3618677 NCBI chr12:22,716,421...22,726,982
Ensembl chr12:22,716,423...22,726,982
JBrowse link
G Ramp2 receptor activity modifying protein 2 ISO
ISS
(MGI:MGI:3772552|PMID:18097473)
GO_REF:0000024
RGD
UniProt
PMID:18097473 GO_REF:0000024, MGI:MGI:3772552 NCBI chr10:89,166,170...89,168,962
Ensembl chr10:89,166,890...89,168,965
JBrowse link
basement membrane disassembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cma1 chymase 1 ISO (PMID:27068509) RGD PMID:27068509 NCBI chr15:34,601,037...34,603,819
Ensembl chr15:34,601,037...34,603,819
JBrowse link
G Ctss cathepsin S ISO
IEA
(PMID:22952693)
GO_REF:0000107
(MGI:MGI:5553237|PMID:22952693)
RGD
Ensembl
PMID:22952693 GO_REF:0000107, MGI:MGI:5553237 NCBI chr 2:197,655,780...197,679,768
Ensembl chr 2:197,655,786...197,679,458
JBrowse link
G Hpn hepsin IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:16908524)
Ensembl
UniProt
RGD
PMID:16908524 GO_REF:0000024, GO_REF:0000107 NCBI chr 1:89,534,112...89,549,575
Ensembl chr 1:89,534,106...89,543,967
JBrowse link
positive regulation of basement membrane assembly involved in embryonic body morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 cytoplasmic linker associated protein 1 ISO UniProtKB:Q86SQ0|UniProtKB:Q86UU1 (PMID:23940118) RGD PMID:23940118 NCBI chr13:34,365,038...34,584,651
Ensembl chr13:34,365,147...34,584,651
JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 ISO
IEA
(PMID:23940118)
GO_REF:0000107
RGD
Ensembl
PMID:23940118 GO_REF:0000107 NCBI chr 8:122,003,719...122,185,495
Ensembl chr 8:122,003,916...122,185,495
JBrowse link
G Dag1 dystroglycan 1 ISO (PMID:23940118) RGD PMID:23940118 NCBI chr 8:116,980,501...116,993,182
Ensembl chr 8:116,980,497...116,993,193
JBrowse link
G Phldb1 pleckstrin homology-like domain, family B, member 1 IEA
ISO
GO_REF:0000107
UniProtKB:Q7Z460|UniProtKB:Q86SQ0 (PMID:23940118)
Ensembl
RGD
PMID:23940118 GO_REF:0000107 NCBI chr 8:48,997,189...49,045,176
Ensembl chr 8:48,997,184...49,045,154
JBrowse link
G Phldb2 pleckstrin homology-like domain, family B, member 2 ISO UniProtKB:Q7Z460|UniProtKB:Q86UU1 (PMID:23940118) RGD PMID:23940118 NCBI chr11:60,042,879...60,051,229
Ensembl chr11:57,265,732...57,481,589
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    cellular process 18800
      cellular component organization or biogenesis 6789
        cellular component organization 6534
          extracellular structure organization 316
            extracellular matrix organization 315
              basement membrane organization 30
                basement membrane assembly + 13
                basement membrane disassembly + 3
                regulation of basement membrane organization + 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.