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ONTOLOGY REPORT - ANNOTATIONS


Term:podosome assembly
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Accession:GO:0071800 term browser browse the term
Definition:The aggregation, arrangement and bonding together of a set of components to form a podosome, an actin-rich adhesion structure characterized by formation upon cell substrate contact and localization at the substrate-attached part of the cell.


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podosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bin2 bridging integrator 2 JBrowse link 7 142,273,832 142,304,731 RGD:1624291
RGD:13792537
RGD:1600115
G Dbnl drebrin-like JBrowse link 14 86,029,335 86,044,364 RGD:1624291
RGD:1600115
G Farp2 FERM, ARH/RhoGEF and pleckstrin domain protein 2 JBrowse link 9 100,660,366 100,767,940 RGD:1624291
G Sh3pxd2b SH3 and PX domains 2B JBrowse link 10 17,209,152 17,296,449 RGD:1624291
negative regulation of podosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arhgef2 Rho/Rac guanine nucleotide exchange factor 2 JBrowse link 2 187,964,100 188,022,847 RGD:1624291
positive regulation of podosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arhgef5 Rho guanine nucleotide exchange factor 5 JBrowse link 4 72,710,775 72,736,415 RGD:1624291
G Arpc2 actin related protein 2/3 complex, subunit 2 JBrowse link 9 81,518,163 81,548,871 RGD:2306207
G Asap1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 JBrowse link 7 104,670,076 104,951,090 RGD:1624291
RGD:13792537
G Capg capping actin protein, gelsolin like JBrowse link 4 100,395,693 100,419,447 RGD:1624291
G Csf2 colony stimulating factor 2 JBrowse link 10 39,602,089 39,604,070 RGD:1624291
G Fscn1 fascin actin-bundling protein 1 JBrowse link 12 13,655,459 13,668,595 RGD:1624291
RGD:1600115
G Il5 interleukin 5 JBrowse link 10 39,066,716 39,069,587 RGD:1624291
G Lcp1 lymphocyte cytosolic protein 1 JBrowse link 15 57,170,566 57,277,811 RGD:1624291
G Mapk8 mitogen-activated protein kinase 8 JBrowse link 16 9,620,854 9,709,342 RGD:1624291
G Mapk9 mitogen-activated protein kinase 9 JBrowse link 10 35,333,859 35,374,364 RGD:1624291
RGD:1600115
G Msn moesin JBrowse link X 65,226,834 65,294,192 RGD:1624291
RGD:1600115
G Palld palladin, cytoskeletal associated protein JBrowse link 16 31,865,712 31,948,168 RGD:2325783
G Rhoa ras homolog family member A JBrowse link 8 117,082,440 117,116,244 RGD:1624291
G Src SRC proto-oncogene, non-receptor tyrosine kinase JBrowse link 3 153,547,807 153,595,643 RGD:1624291
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:1624291
regulation of podosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gsn gelsolin JBrowse link 3 14,456,106 14,508,922 RGD:1624291
G Hck HCK proto-oncogene, Src family tyrosine kinase JBrowse link 3 148,579,917 148,623,026 RGD:1624291
RGD:1600115
G Kif9 kinesin family member 9 JBrowse link 8 118,737,739 118,795,190 RGD:1624291

Term paths to the root
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Term Annotations click to browse term
  biological_process 19336
    cellular process 17240
      cellular component organization 6222
        cellular component assembly 2781
          protein-containing complex assembly 1526
            podosome assembly 23
              negative regulation of podosome assembly 1
              positive regulation of podosome assembly 15
              regulation of podosome assembly + 19
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.