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ONTOLOGY REPORT - ANNOTATIONS


Term:ribonucleoprotein complex subunit organization
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Accession:GO:0071826 term browser browse the term
Definition:Any process in which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a ribonucleoprotein complex.
Synonyms:exact_synonym: protein-RNA complex subunit organization;   ribonucleoprotein complex subunit organisation


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90S preribosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpl38 ribosomal protein L38 ISO (MGI:MGI:5014009|PMID:21529712) RGD PMID:21529712 MGI:MGI:5014009 NCBI chr10:103,198,424...103,202,059
Ensembl chr 2:199,479,007...199,479,309
JBrowse link
assembly of large subunit precursor of preribosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif6 eukaryotic translation initiation factor 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:151,356,867...151,363,201
Ensembl chr 3:151,356,868...151,363,115
JBrowse link
G RGD1560821 similar to small nuclear ribonucleoparticle-associated protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:77,885,562...77,886,179
Ensembl chr  X:77,885,586...77,886,170
JBrowse link
G Rpl24 ribosomal protein L24 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:47,116,885...47,122,093
Ensembl chr11:47,116,886...47,122,095
JBrowse link
G Rsl24d1 ribosomal L24 domain containing 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:79,792,587...79,801,592
Ensembl chr 8:79,792,587...79,801,594
JBrowse link
box C/D snoRNP assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nufip1 nuclear FMR1 interacting protein 1 ISO
IBA
(PMID:17636026)
PMID:21873635
RGD PMID:17636026, PMID:21873635 RGD:13792537 NCBI chr15:58,171,163...58,201,888
Ensembl chr15:58,170,967...58,201,970
JBrowse link
G Pih1d1 PIH1 domain containing 1 ISO
IBA
(PMID:17636026)
PMID:21873635
RGD PMID:17636026, PMID:21873635 RGD:13792537 NCBI chr 1:101,151,240...101,156,806
Ensembl chr 1:101,152,734...101,156,805
JBrowse link
G Pih1d2 PIH1 domain containing 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:55,050,284...55,060,289
Ensembl chr 8:55,050,284...55,058,474
JBrowse link
G RGD1564855 similar to RuvB-like protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:1,854,580...1,856,333
Ensembl chr  X:1,854,751...1,856,258
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:120,411,917...120,447,458
Ensembl chr 4:120,411,991...120,447,455
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:101,413,766...101,426,970
Ensembl chr 1:101,413,766...101,426,852
JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 ISO (MGI:MGI:5882914|PMID:11842104) RGD PMID:11842104 MGI:MGI:5882914 NCBI chr 7:123,282,754...123,287,721
Ensembl chr 7:123,282,754...123,287,721
JBrowse link
G Taf9 TATA-box binding protein associated factor 9 ISO (PMID:17636026) RGD PMID:17636026 NCBI chr 2:30,664,407...30,668,414
Ensembl chr 2:30,664,639...30,668,414
JBrowse link
G Znhit3 zinc finger, HIT-type containing 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:72,227,710...72,235,932
Ensembl chr10:72,228,222...72,235,888
JBrowse link
G Znhit6 zinc finger, HIT-type containing 6 ISO
IBA
(PMID:17636026)
PMID:21873635
RGD PMID:17636026, PMID:21873635 RGD:13792537 NCBI chr 2:251,453,503...251,484,760
Ensembl chr 2:251,453,644...251,484,759
JBrowse link
box H/ACA snoRNP assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Naf1 nuclear assembly factor 1 ribonucleoprotein IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr16:24,582,000...24,612,773
Ensembl chr16:24,578,678...24,612,732
JBrowse link
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:133,037,515...133,127,183
NCBI chr 4:133,131,711...133,133,170
Ensembl chr 4:133,037,014...133,131,953
JBrowse link
formation of cytoplasmic translation initiation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif2s2 eukaryotic translation initiation factor 2 subunit beta IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:150,391,455...150,412,179
Ensembl chr 3:150,391,460...150,412,179
JBrowse link
G Eif3a eukaryotic translation initiation factor 3, subunit A ISO
IBA
ISS
(PMID:17581632)
PMID:21873635
GO_REF:0000024
(MGI:MGI:3843422|PMID:17581632)
RGD
UniProt
PMID:17581632, PMID:21873635 GO_REF:0000024, MGI:MGI:3843422, RGD:13792537 NCBI chr 1:282,139,809...282,170,017
Ensembl chr 1:282,139,823...282,170,017
JBrowse link
G Eif3b eukaryotic translation initiation factor 3, subunit B IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr12:16,285,730...16,310,190
Ensembl chr12:16,285,733...16,310,190
JBrowse link
G Eif3c eukaryotic translation initiation factor 3, subunit C IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:197,964,406...197,982,917
Ensembl chr 1:197,964,407...197,982,601
JBrowse link
G Eif3d eukaryotic translation initiation factor 3, subunit D ISO (MGI:MGI:3843422|PMID:17581632) RGD PMID:17581632 MGI:MGI:3843422 NCBI chr 7:119,188,189...119,200,578
Ensembl chr 7:119,188,185...119,200,623
JBrowse link
G Eif3el1 eukaryotic translation initiation factor 3, subunit E-like 1 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr13:100,129,757...100,162,596
Ensembl chr13:100,129,761...100,162,461
JBrowse link
G Eif3f eukaryotic translation initiation factor 3, subunit F IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:173,532,826...173,541,806
Ensembl chr 1:173,532,803...173,541,847
JBrowse link
G Eif3g eukaryotic translation initiation factor 3, subunit G IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:21,911,632...21,915,664
Ensembl chr 8:21,911,625...21,915,716
JBrowse link
G Eif3h eukaryotic translation initiation factor 3, subunit H IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 6:10,151,732...10,236,677 JBrowse link
G Eif3i eukaryotic translation initiation factor 3, subunit I IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 5:147,796,580...147,803,853
Ensembl chr 5:147,796,662...147,803,851
JBrowse link
G Eif3j eukaryotic translation initiation factor 3, subunit J IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:113,976,687...113,998,925
Ensembl chr 3:113,976,687...113,998,922
JBrowse link
G Eif3k eukaryotic translation initiation factor 3, subunit K IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:87,927,142...87,937,033
Ensembl chr 1:87,927,141...87,937,516
JBrowse link
G Eif3m eukaryotic translation initiation factor 3, subunit M IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:94,990,086...95,007,690
Ensembl chr 3:94,990,068...95,007,712
JBrowse link
G Eif5 eukaryotic translation initiation factor 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:136,002,983...136,011,409
Ensembl chr 6:136,004,214...136,011,406
JBrowse link
G LOC100365062 eukaryotic translation initiation factor 3, subunit 6 48kDa-like IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:66,643,731...66,645,224
Ensembl chr 1:66,643,739...66,645,214
JBrowse link
G LOC100909481 eukaryotic translation initiation factor 3 subunit E-like IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:66,637,810...66,639,219
Ensembl chr 1:66,637,868...66,639,205
JBrowse link
G LOC108348062 eukaryotic translation initiation factor 3 subunit H IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 6:108,698,680...108,756,289
Ensembl chr 6:10,151,729...10,236,695
JBrowse link
G LOC108348260 eukaryotic translation initiation factor 3 subunit E IEA GO_REF:0000104 UniProt GO_REF:0000104
G NEWGENE_619861 eukaryotic translation initiation factor 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:136,002,962...136,011,409
Ensembl chr 6:136,004,214...136,011,406
JBrowse link
formation of translation preinitiation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Denr density regulated reinitiation and release factor ISO
IBA
(PMID:20713520)
PMID:21873635
RGD PMID:20713520, PMID:21873635 RGD:13792537 NCBI chr12:38,095,717...38,117,758
Ensembl chr12:38,096,034...38,116,919
JBrowse link
G Dhx29 DExH-box helicase 29 ISO (PMID:23047696) RGD PMID:23047696 NCBI chr 2:44,787,066...44,837,834
Ensembl chr 2:44,787,002...44,837,831
JBrowse link
G Eif2d eukaryotic translation initiation factor 2D ISO
IBA
(PMID:20713520)
PMID:21873635
RGD PMID:20713520, PMID:21873635 RGD:13792537 NCBI chr13:47,935,138...47,958,459
Ensembl chr13:47,935,163...47,954,090
JBrowse link
G Eif2s2 eukaryotic translation initiation factor 2 subunit beta IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:150,391,455...150,412,179
Ensembl chr 3:150,391,460...150,412,179
JBrowse link
G Eif2s3 eukaryotic translation initiation factor 2 subunit gamma IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:63,268,106...63,291,125
Ensembl chr  X:63,268,037...63,292,092
JBrowse link
G Eif2s3y eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  Y:914,062...933,699
Ensembl chr  Y:914,045...933,699
JBrowse link
G Eif4b eukaryotic translation initiation factor 4B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:143,679,656...143,701,452
Ensembl chr 7:143,679,617...143,701,452
JBrowse link
G Eif4h eukaryotic translation initiation factor 4H IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:25,093,119...25,109,805
Ensembl chr12:25,093,149...25,109,799
JBrowse link
G Eif5 eukaryotic translation initiation factor 5 IDA
IBA
IMP
PMID:21873635 RGD
GO_Central
PMID:8464924, PMID:21873635, PMID:10805737 RGD:728212, RGD:13792537, RGD:10755758 NCBI chr 6:136,002,983...136,011,409
Ensembl chr 6:136,004,214...136,011,406
JBrowse link
G Mcts1 MCTS1, re-initiation and release factor ISO
IBA
(PMID:20713520)
PMID:21873635
RGD PMID:20713520, PMID:21873635 RGD:13792537 NCBI chr  X:124,894,269...124,906,129
Ensembl chr  X:124,894,466...124,906,162
JBrowse link
G NEWGENE_619861 eukaryotic translation initiation factor 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:136,002,962...136,011,409
Ensembl chr 6:136,004,214...136,011,406
JBrowse link
G Rps2 ribosomal protein S2 IMP RGD PMID:344063 RGD:2299070 NCBI chr10:14,088,171...14,090,020
Ensembl chr10:14,088,319...14,089,979
JBrowse link
generation of catalytic spliceosome for first transesterification step term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prpf19 pre-mRNA processing factor 19 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:226,947,065...226,958,147
Ensembl chr 1:226,947,105...226,958,144
JBrowse link
G Xab2 XPA binding protein 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:2,158,391...2,170,397
Ensembl chr12:2,158,389...2,170,504
JBrowse link
generation of catalytic spliceosome for second transesterification step term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isy1 ISY1 splicing factor homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:119,721,659...119,742,349
Ensembl chr 4:119,721,660...119,742,349
JBrowse link
G Prpf18 pre-mRNA processing factor 18 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:77,601,914...77,632,507
Ensembl chr17:77,601,877...77,663,980
JBrowse link
messenger ribonucleoprotein complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf6 cleavage and polyadenylation specific factor 6 ISO (PMID:29276085) RGD PMID:29276085 NCBI chr 7:60,385,688...60,417,661
Ensembl chr 7:60,385,688...60,416,925
JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 ISS
ISO
GO_REF:0000024
(PMID:29276085)
UniProt
RGD
PMID:29276085 GO_REF:0000024 NCBI chr 1:226,572,399...226,596,185
Ensembl chr 1:226,573,105...226,596,131
JBrowse link
G Nudt21 nudix hydrolase 21 ISS
ISO
GO_REF:0000024
(PMID:29276085)
UniProt
RGD
PMID:29276085 GO_REF:0000024 NCBI chr19:11,451,366...11,470,637
Ensembl chr19:11,450,760...11,467,644
JBrowse link
miRNA loading onto RISC involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific ISO
IEA
(PMID:23622242)
GO_REF:0000107
RGD
Ensembl
PMID:23622242 GO_REF:0000107 NCBI chr 2:189,045,551...189,085,448
Ensembl chr 2:189,062,443...189,083,236
JBrowse link
G Ago1 argonaute RISC component 1 ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 IEA
ISO
GO_REF:0000107
(PMID:18178619), (PMID:19966796)
Ensembl
RGD
PMID:18178619, PMID:19966796 GO_REF:0000107 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Ago4 argonaute RISC component 4 ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO (PMID:18178619) RGD PMID:18178619 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex ISO (PMID:18178619) RGD PMID:18178619 NCBI chr 7:144,121,688...144,126,860
Ensembl chr 7:144,121,744...144,126,857
JBrowse link
mitochondrial large ribosomal subunit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx28 DEAD-box helicase 28 ISO
IBA
(PMID:25683715)
PMID:21873635
RGD PMID:25683715, PMID:21873635 RGD:13792537 NCBI chr19:37,988,423...37,990,353
Ensembl chr19:37,988,423...37,990,353
JBrowse link
G Dhx30 DExH-box helicase 30 ISO
ISS
(PMID:25683715)
GO_REF:0000024
RGD
UniProt
PMID:25683715 GO_REF:0000024 NCBI chr 8:118,160,315...118,194,674
Ensembl chr 8:118,160,299...118,187,791
JBrowse link
G Fastkd2 FAST kinase domains 2 ISO
IEA
ISS
(PMID:25683715)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:25683715 GO_REF:0000024, GO_REF:0000107 NCBI chr 9:70,448,386...70,471,420
Ensembl chr 9:70,450,444...70,470,550
JBrowse link
mRNA 3'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isy1 ISY1 splicing factor homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:119,721,659...119,742,349
Ensembl chr 4:119,721,660...119,742,349
JBrowse link
G Slu7 SLU7 homolog, splicing factor ISO
ISS
(PMID:15728250)
PMID:15181151
RGD PMID:15728250, PMID:15181151 RGD:1304333 NCBI chr10:29,029,556...29,044,919
Ensembl chr10:29,029,590...29,044,583
JBrowse link
mRNA 5'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prpf39 pre-mRNA processing factor 39 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:86,785,793...86,810,806
Ensembl chr 6:86,785,771...86,810,316
JBrowse link
G Psip1 PC4 and SFRS1 interacting protein 1 ISO
IEA
ISS
(PMID:9885563)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:9885563 GO_REF:0000024, GO_REF:0000107 NCBI chr 5:101,555,691...101,588,659
Ensembl chr 5:101,555,694...101,588,598
JBrowse link
G Sfswap splicing factor SWAP ISO
IBA
IEA
(MGI:MGI:84585|PMID:8940107)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:8940107, PMID:21873635 GO_REF:0000107, MGI:MGI:84585, RGD:13792537 NCBI chr12:30,740,563...30,811,015
Ensembl chr12:30,740,520...30,811,054
JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:7,409,401...7,427,581
Ensembl chr20:7,409,401...7,427,581
JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 ISO (PMID:8940107), (PMID:9885563) RGD PMID:8940107, PMID:9885563 NCBI chr10:75,334,200...75,341,197
Ensembl chr10:75,335,146...75,341,197
JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 ISO (PMID:11684676) RGD PMID:11684676 NCBI chr 5:48,456,777...48,484,017
Ensembl chr 5:48,456,757...48,485,912
JBrowse link
mRNA splice site selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf1 CUGBP, Elav-like family member 1 ISO
IBA
(MGI:MGI:1930458|PMID:11158314)
PMID:21873635
(PMID:11158314)
RGD PMID:11158314, PMID:21873635 MGI:MGI:1930458, RGD:13792537 NCBI chr 3:79,768,900...79,844,548
Ensembl chr 3:79,823,945...79,842,082
JBrowse link
G Celf2 CUGBP, Elav-like family member 2 ISO
IBA
IEA
(MGI:MGI:1930458|PMID:11158314)
PMID:21873635
(PMID:11158314)
GO_REF:0000107
RGD
Ensembl
PMID:11158314, PMID:21873635 GO_REF:0000107, MGI:MGI:1930458, RGD:13792537 NCBI chr17:75,259,269...75,660,154
Ensembl chr17:75,352,389...75,654,951
JBrowse link
G Celf3 CUGBP, Elav-like family member 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:195,716,373...195,732,872
Ensembl chr 2:195,719,543...195,730,274
JBrowse link
G Celf4 CUGBP, Elav-like family member 4 ISO
IBA
(MGI:MGI:1930458|PMID:11158314)
PMID:21873635
RGD PMID:11158314, PMID:21873635 MGI:MGI:1930458, RGD:13792537 NCBI chr18:17,689,090...18,079,835
Ensembl chr18:17,698,038...17,716,880
JBrowse link
G Celf5 CUGBP, Elav-like family member 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:11,095,449...11,119,941
Ensembl chr 7:11,095,468...11,119,941
JBrowse link
G Celf6 CUGBP, Elav-like family member 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:64,364,491...64,428,452
Ensembl chr 8:64,364,741...64,428,386
JBrowse link
G Khdc4 KH domain containing 4, pre-mRNA splicing factor ISO (PMID:19641227) RGD PMID:19641227 NCBI chr 2:188,051,657...188,080,280
Ensembl chr 2:188,052,236...188,080,301
JBrowse link
G Luc7l LUC7-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:15,538,878...15,572,651
Ensembl chr10:15,538,872...15,568,638
JBrowse link
G Luc7l2 LUC7-like 2 pre-mRNA splicing factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:66,290,319...66,357,970
Ensembl chr 4:66,290,389...66,354,711
JBrowse link
G Luc7l3 LUC7-like 3 pre-mRNA splicing factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:81,991,147...82,027,119
Ensembl chr10:81,991,147...82,027,119
JBrowse link
G Mbnl1 muscleblind-like splicing regulator 1 ISO MGI:MGI:3052922 (MGI:MGI:2682447|PMID:14671308), (MGI:MGI:3655436|PMID:16717059) RGD PMID:14671308, PMID:16717059 MGI:MGI:2682447, MGI:MGI:3655436 NCBI chr 2:150,698,248...150,867,791
Ensembl chr 2:150,756,185...150,869,690
JBrowse link
G Nol3 nucleolar protein 3 ISO
IEA
ISS
(PMID:10196175)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:10196175 GO_REF:0000024, GO_REF:0000107 NCBI chr19:37,232,567...37,236,668
Ensembl chr19:37,235,001...37,236,649
JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 ISO MGI:MGI:4124189 (MGI:MGI:1859428|PMID:10829067), (MGI:MGI:5430666|PMID:22802532) RGD PMID:10829067, PMID:22802532 MGI:MGI:1859428, MGI:MGI:5430666 NCBI chr 2:223,261,444...223,323,075
Ensembl chr 2:223,262,852...223,322,585
JBrowse link
G Puf60 poly-U binding splicing factor 60 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:117,129,237...117,140,234
Ensembl chr 7:117,129,237...117,140,214
JBrowse link
G Rbmx RNA binding motif protein, X-linked IMP RGD PMID:19282290 RGD:2316827 NCBI chr  X:159,881,835...159,891,405
Ensembl chr  X:159,884,885...159,891,326
JBrowse link
G Rbmxl1 RBMX like 1 IDA PMID:19282290 UniProt PMID:19282290 RGD:2316827 NCBI chr19:33,081,473...33,084,988
Ensembl chr19:33,083,412...33,084,915
JBrowse link
G Setx senataxin ISO (PMID:19515850) RGD PMID:19515850 NCBI chr 3:7,680,430...7,731,815
Ensembl chr 3:7,686,503...7,730,539
JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 ISO (PMID:9774382) RGD PMID:9774382 NCBI chr 5:154,205,358...154,219,550
Ensembl chr 5:154,205,402...154,213,801
JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 ISO
IBA
ISS
(PMID:12549914)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:12549914, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 3:159,305,345...159,310,668
Ensembl chr 3:159,305,345...159,310,668
JBrowse link
G Ythdc1 YTH domain containing 1 ISO
ISS
(PMID:20167602)
GO_REF:0000024
RGD
UniProt
PMID:20167602 GO_REF:0000024 NCBI chr14:22,971,834...23,002,326
Ensembl chr14:22,971,836...23,002,011
JBrowse link
negative regulation of formation of translation preinitiation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpl13a ribosomal protein L13A ISO
ISS
(PMID:17218275)
GO_REF:0000024
RGD
UniProt
PMID:17218275 GO_REF:0000024 NCBI chr 1:101,120,325...101,123,401
Ensembl chr 1:101,120,325...101,123,402
JBrowse link
positive regulation of telomerase catalytic core complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase ISO (PMID:26586433) RGD PMID:26586433 NCBI chr 8:58,015,938...58,119,973
Ensembl chr 8:58,015,940...58,120,045
JBrowse link
G Atr ATR serine/threonine kinase ISO (PMID:26586433) RGD PMID:26586433 NCBI chr 8:103,673,578...103,770,886
Ensembl chr 8:103,673,411...103,770,947
JBrowse link
recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:60,403,771...60,496,511
Ensembl chr13:60,403,771...60,496,511
JBrowse link
G Polr2d RNA polymerase II subunit D IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:24,570,762...24,577,894
Ensembl chr18:24,570,762...24,577,894
JBrowse link
recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ramac RNA guanine-7 methyltransferase activating subunit ISO
IBA
(PMID:22099306)
PMID:21873635
RGD PMID:22099306, PMID:21873635 RGD:13792537 NCBI chr 1:143,583,675...143,589,563
Ensembl chr 1:143,583,675...143,589,556
JBrowse link
ribonucleoprotein complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07032520.2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr18:69,818,720...69,818,935 JBrowse link
G AABR07039377.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:74,824,504...74,824,719 JBrowse link
G AABR07060145.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:59,014,204...59,014,416 JBrowse link
G AC098064.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:8,955,329...8,955,538 JBrowse link
G AC135822.2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:150,303,036...150,303,224 JBrowse link
G Ckap5 cytoskeleton associated protein 5 ISO MGI:MGI:2177650|MGI:MGI:5570192 (MGI:MGI:5546446|PMID:23936366) RGD PMID:23936366 MGI:MGI:5546446 NCBI chr 3:80,424,320...80,526,583
Ensembl chr 3:80,468,154...80,526,593
JBrowse link
G LOC680353 similar to 60S ribosomal protein L38 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:74,824,481...74,824,720 JBrowse link
G LOC680512 similar to 60S ribosomal protein L38 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:69,818,708...69,818,986 JBrowse link
G LOC682793 similar to 60S ribosomal protein L38 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:199,479,007...199,479,309 JBrowse link
G LOC685963 similar to 60S ribosomal protein L38 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:164,002,409...164,002,748
Ensembl chr 3:164,002,482...164,002,694
JBrowse link
G LOC686066 similar to 60S ribosomal protein L38 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:8,955,289...8,955,655 JBrowse link
G LOC690468 similar to 60S ribosomal protein L38 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:199,478,992...199,479,316
Ensembl chr 2:199,479,007...199,479,309
JBrowse link
G RGD1561636 similar to 60S ribosomal protein L38 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:59,014,152...59,014,462 JBrowse link
G Rpl38 ribosomal protein L38 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:103,198,424...103,202,059
Ensembl chr 2:199,479,007...199,479,309
JBrowse link
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor ISO (PMID:19383767) RGD PMID:19383767 NCBI chr 4:133,037,515...133,127,183
NCBI chr 4:133,131,711...133,133,170
Ensembl chr 4:133,037,014...133,131,953
JBrowse link
ribosomal large subunit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07015476.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr14:58,877,806...58,878,270 JBrowse link
G AABR07018050.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:37,418,885...37,419,358 JBrowse link
G AABR07021384.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr13:69,172,167...69,172,643 JBrowse link
G AABR07031089.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:112,564,256...112,565,146 JBrowse link
G AABR07061158.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:107,443,393...107,443,853 JBrowse link
G AABR07061838.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:148,361,814...148,362,278 JBrowse link
G AABR07064667.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:89,932,659...89,933,168 JBrowse link
G AABR07064811.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:95,889,849...95,890,325 JBrowse link
G AABR07070060.2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:47,036,150...47,036,766 JBrowse link
G AABR07072260.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr11:83,855,753...83,856,316 JBrowse link
G AC120310.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:14,686,554...14,687,408 JBrowse link
G AC123138.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:45,105,280...45,106,267 JBrowse link
G Bop1 BOP1 ribosomal biogenesis factor ISO (PMID:24120868) RGD PMID:24120868 NCBI chr 7:117,514,529...117,538,342
Ensembl chr 7:117,514,533...117,538,342
JBrowse link
G Brix1 biogenesis of ribosomes BRX1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:60,450,547...60,461,425
Ensembl chr 2:60,450,374...60,461,458
JBrowse link
G LOC100911018 60S ribosomal protein L6-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:14,686,507...14,687,465 JBrowse link
G LOC102555453 60S ribosomal protein L12-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:1,345,540...1,346,244
Ensembl chr  X:1,345,684...1,346,181
Ensembl chr 7:1,345,684...1,346,181
JBrowse link
G LOC108352551 60S ribosomal protein L23a pseudogene IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:69,172,130...69,172,673 JBrowse link
G LOC689496 similar to 60S ribosomal protein L11 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:89,932,659...89,940,211 JBrowse link
G LOC689899 similar to 60S ribosomal protein L23a IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:24,129,598...24,130,134
Ensembl chr14:24,129,592...24,130,122
JBrowse link
G LOC690335 similar to 60S ribosomal protein L23a IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:95,889,798...95,890,332 JBrowse link
G Mdn1 midasin AAA ATPase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:47,894,526...48,036,071
Ensembl chr 5:47,894,530...48,036,287
JBrowse link
G mrpl11 mitochondrial ribosomal protein L11 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:220,243,469...220,246,340
Ensembl chr 1:220,243,473...220,246,346
JBrowse link
G Mrpl20 mitochondrial ribosomal protein L20 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:173,248,245...173,252,775
Ensembl chr 5:173,248,245...173,252,775
JBrowse link
G Mrto4 MRT4 homolog, ribosome maturation factor IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:157,814,142...157,820,889
Ensembl chr 5:157,815,361...157,820,889
JBrowse link
G Nle1 notchless homolog 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:70,250,959...70,261,880
Ensembl chr10:70,250,959...70,259,553
JBrowse link
G Nop2 NOP2 nucleolar protein ISO (PMID:24120868) RGD PMID:24120868 NCBI chr 4:157,646,759...157,658,502
Ensembl chr 4:157,647,082...157,658,390
JBrowse link
G Nop53 NOP53 ribosome biogenesis factor ISO
IBA
(PMID:24120868)
PMID:21873635
RGD PMID:24120868, PMID:21873635 RGD:13792537 NCBI chr 1:77,836,522...77,843,991
Ensembl chr 1:77,836,196...77,844,189
JBrowse link
G Ppan peter pan homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:21,905,865...21,909,845
Ensembl chr 8:21,905,865...21,909,842
JBrowse link
G RGD1560821 similar to small nuclear ribonucleoparticle-associated protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:77,885,562...77,886,179
Ensembl chr  X:77,885,586...77,886,170
JBrowse link
G RGD1562755 similar to 60S ribosomal protein L23a IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:58,877,806...58,883,654 JBrowse link
G RGD1563956 similar to 60S ribosomal protein L12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:83,855,637...83,856,331 JBrowse link
G RGD1564606 similar to 60S ribosomal protein L23a IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:38,230,697...38,231,287
Ensembl chr 2:38,230,757...38,231,227
JBrowse link
G RGD1564883 similar to 60S ribosomal protein L12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:59,762,496...59,763,218 JBrowse link
G Rpf2 ribosome production factor 2 homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:45,321,381...45,342,865
Ensembl chr20:45,321,405...45,342,948
JBrowse link
G Rpl10 ribosomal protein L10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:156,438,251...156,440,461
Ensembl chr  X:156,438,251...156,440,461
JBrowse link
G Rpl10l ribosomal protein L10-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:88,231,273...88,232,549
Ensembl chr 6:88,231,611...88,232,252
JBrowse link
G Rpl11 ribosomal protein L11 ISO
IBA
(PMID:24120868)
PMID:21873635
RGD PMID:24120868, PMID:21873635 RGD:13792537 NCBI chr 5:154,390,809...154,394,412
Ensembl chr 5:154,388,140...154,394,328
JBrowse link
G Rpl12 ribosomal protein L12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:12,009,578...12,011,952
Ensembl chr 3:12,009,578...12,011,666
JBrowse link
G Rpl12-ps1 ribosomal protein L12, pseudogene 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:85,489,465...85,490,197
Ensembl chr 8:85,489,553...85,490,050
JBrowse link
G Rpl23a ribosomal protein L23a IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:65,441,295...65,443,981
Ensembl chr10:65,441,295...65,443,981
JBrowse link
G Rpl24 ribosomal protein L24 ISO
IBA
MGI:MGI:1856685 (MGI:MGI:3051697|PMID:15289434)
PMID:21873635
RGD PMID:15289434, PMID:21873635 MGI:MGI:3051697, RGD:13792537 NCBI chr11:47,116,885...47,122,093
Ensembl chr11:47,116,886...47,122,095
JBrowse link
G Rpl3 ribosomal protein L3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:121,297,365...121,302,739
Ensembl chr 7:121,297,355...121,311,565
JBrowse link
G Rpl3l ribosomal protein L3-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:14,094,769...14,105,312
Ensembl chr10:14,094,754...14,105,308
JBrowse link
G Rpl5 ribosomal protein L5 ISO
IBA
(PMID:24120868)
PMID:21873635
RGD PMID:24120868, PMID:21873635 RGD:13792537 NCBI chr14:2,860,963...2,867,397
Ensembl chr14:2,860,965...2,867,397
JBrowse link
G Rpl5l1 ribosomal protein L5-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:112,564,193...112,565,170 JBrowse link
G Rpl6 ribosomal protein L6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:40,877,578...40,882,032
Ensembl chr12:40,877,613...40,881,124
JBrowse link
G Rpl6-ps1 ribosomal protein L6, pseudogene 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:128,738,363...128,739,339
Ensembl chr 6:128,738,388...128,739,319
JBrowse link
G Rplp0 ribosomal protein lateral stalk subunit P0 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:46,791,528...46,794,797
Ensembl chr12:46,791,528...46,794,797
JBrowse link
G Rplp0l1 ribosomal protein lateral stalk subunit P0 like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:206,902,776...206,903,920
Ensembl chr 2:206,902,962...206,903,920
JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog ISO
ISS
(PMID:24120868)
GO_REF:0000024
RGD
UniProt
PMID:24120868 GO_REF:0000024 NCBI chr 5:9,430,710...9,432,343
Ensembl chr 5:9,430,728...9,432,343
JBrowse link
G Rsl24d1 ribosomal L24 domain containing 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:79,792,587...79,801,592
Ensembl chr 8:79,792,587...79,801,594
JBrowse link
G Traf7 TNF receptor associated factor 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:13,874,444...13,893,090
Ensembl chr10:13,874,456...13,892,997
JBrowse link
ribosomal small subunit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07005506.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:183,629,450...183,630,695 JBrowse link
G AABR07005886.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:204,092,151...204,096,473 JBrowse link
G AABR07017250.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:19,429,508...19,430,011 JBrowse link
G AABR07021945.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr13:99,981,052...99,982,358 JBrowse link
G AABR07024954.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:22,410,734...22,411,225 JBrowse link
G AABR07028859.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:89,162,673...89,163,113 JBrowse link
G AABR07029006.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:2,229,038...2,229,493 JBrowse link
G AABR07040944.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:115,375,018...115,375,492 JBrowse link
G AABR07053635.2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:117,853,999...117,854,481 JBrowse link
G AABR07056611.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:32,193,086...32,193,418 JBrowse link
G AABR07057264.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:63,352,046...63,352,667 JBrowse link
G AABR07063995.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:59,531,077...59,531,574 JBrowse link
G AABR07064312.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:75,469,895...75,470,347 JBrowse link
G AC117101.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:28,803,080...28,803,529 JBrowse link
G AC128207.2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:2,961,442...2,961,873 JBrowse link
G Eral1 Era-like 12S mitochondrial rRNA chaperone 1 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:20604745), (PMID:28449065)
UniProt
RGD
PMID:20604745, PMID:28449065, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:65,272,849...65,291,070
Ensembl chr10:65,272,849...65,291,064
JBrowse link
G LOC100359503 ribosomal protein S28-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:70,644,459...70,644,750
Ensembl chr16:70,644,474...70,644,683
JBrowse link
G LOC100361240 ribosomal protein S10-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:19,429,486...19,430,032 JBrowse link
G LOC100362339 ribosomal protein S19-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:54,057,935...54,058,462
Ensembl chr17:54,057,964...54,058,460
JBrowse link
G LOC100362987 ribosomal protein S27-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:10,737,524...10,737,845
Ensembl chr 9:10,737,579...10,737,830
JBrowse link
G LOC100911847 40S ribosomal protein S14-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:144,083,030...144,083,602
Ensembl chr18:56,044,369...56,047,316
JBrowse link
G LOC103690015 40S ribosomal protein S19-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:77,541,352...77,541,835
Ensembl chr 1:77,541,359...77,541,814
JBrowse link
G LOC108348601 40S ribosomal protein S19 pseudogene IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:89,162,638...89,163,164 JBrowse link
G LOC108353424 40S ribosomal protein S28 pseudogene IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G LOC500594 LRRGT00162 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:169,632,527...169,637,356
Ensembl chr 5:169,632,527...169,637,356
JBrowse link
G LOC502176 hypothetical protein LOC502176 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:60,729,517...60,767,280
Ensembl chr18:60,745,035...60,767,280
JBrowse link
G LOC688899 similar to 40S ribosomal protein S19 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:2,228,997...2,229,504 JBrowse link
G LOC690444 similar to 40S ribosomal protein S19 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:28,803,039...28,803,530 JBrowse link
G Mrps11 mitochondrial ribosomal protein S11 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:140,477,645...140,487,249
Ensembl chr 1:140,477,868...140,487,248
JBrowse link
G Mrps7 mitochondrial ribosomal protein S7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:104,155,805...104,158,840
Ensembl chr10:104,155,805...104,158,839
JBrowse link
G Pwp2 PWP2, small subunit processome component IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:11,228,892...11,243,204
Ensembl chr20:11,228,844...11,243,205
JBrowse link
G RGD1559708 similar to ribosomal protein S10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:22,410,734...22,411,225 JBrowse link
G RGD1559724 similar to 40S ribosomal protein S19 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:75,469,856...75,470,385 JBrowse link
G RGD1560073 similar to ribosomal protein S10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:59,531,042...59,531,582 JBrowse link
G RGD1564698 similar to ribosomal protein S10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:19,715,262...19,715,845 JBrowse link
G Rps10 ribosomal protein S10 IMP
IBA
PMID:21873635 RGD
GO_Central
PMID:3378620, PMID:21873635 RGD:2299075, RGD:13792537 NCBI chr20:7,215,762...7,220,331
Ensembl chr20:7,215,774...7,219,548
JBrowse link
G Rps10l1 ribosomal protein S10-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:75,429,715...75,430,282
Ensembl chr10:19,715,275...19,715,832
Ensembl chr 6:19,715,275...19,715,832
JBrowse link
G Rps14 ribosomal protein S14 IMP
IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:9152021)
UniProt
RGD
PMID:9152021, PMID:3378620, PMID:21873635 GO_REF:0000024, RGD:2299075, RGD:13792537 NCBI chr18:56,042,532...56,047,316
Ensembl chr18:56,044,369...56,047,316
JBrowse link
G Rps15 ribosomal protein S15 IMP
IBA
PMID:21873635 RGD
GO_Central
PMID:3378620, PMID:21873635 RGD:2299075, RGD:13792537 NCBI chr 7:12,282,134...12,283,573
Ensembl chr 7:12,282,109...12,283,608
JBrowse link
G Rps19 ribosomal protein S19 ISO
IBA
(PMID:17053056)
PMID:21873635
RGD PMID:17053056, PMID:21873635 RGD:13792537 NCBI chr 1:81,750,873...81,756,629
Ensembl chr 1:81,750,928...81,756,627
JBrowse link
G Rps19l1 ribosomal protein S19-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:111,722,340...111,754,933
Ensembl chr 7:111,722,390...111,722,964
JBrowse link
G Rps19l2 ribosomal protein S19-like2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:16,802,280...16,807,982
Ensembl chr 1:81,750,928...81,756,627
JBrowse link
G Rps2 ribosomal protein S2 IMP RGD PMID:3378620 RGD:2299075 NCBI chr10:14,088,171...14,090,020
Ensembl chr10:14,088,319...14,089,979
JBrowse link
G Rps25 ribosomal protein s25 IMP RGD PMID:3378620 RGD:2299075 NCBI chr 8:48,727,346...48,729,722
Ensembl chr 8:48,727,618...48,729,580
JBrowse link
G Rps27 ribosomal protein S27 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:189,572,175...189,573,280
Ensembl chr 2:189,572,176...189,573,280
JBrowse link
G Rps27l ribosomal protein S27-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:72,741,155...72,746,090
Ensembl chr 8:72,741,155...72,746,090
JBrowse link
G Rps28 ribosomal protein S28 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:18,682,071...18,683,440
Ensembl chr 7:18,682,071...18,683,440
JBrowse link
G Rps5 ribosomal protein S5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:65,660,470...65,664,767
Ensembl chr 1:65,660,470...65,664,767
JBrowse link
G Rps6 ribosomal protein S6 IMP RGD PMID:3378620 RGD:2299075 NCBI chr 5:105,197,821...105,200,681
Ensembl chr 5:105,197,857...105,200,148
JBrowse link
G Rpsa ribosomal protein SA IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:128,806,053...128,809,987
Ensembl chr 8:128,806,129...128,809,986
JBrowse link
G Rrp7a ribosomal RNA processing 7 homolog A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:123,980,251...123,990,139
Ensembl chr 7:123,980,251...123,990,139
JBrowse link
siRNA loading onto RISC involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 ISO
IEA
(PMID:19966796)
GO_REF:0000107
RGD
Ensembl
PMID:19966796 GO_REF:0000107 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 ISO
ISS
(PMID:17495927)
GO_REF:0000024
RGD
UniProt
PMID:17495927 GO_REF:0000024 NCBI chr 3:72,125,269...72,137,122
Ensembl chr 3:72,125,273...72,128,973
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO (PMID:15973356) RGD PMID:15973356 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex ISO (PMID:15973356) RGD PMID:15973356 NCBI chr 7:144,121,688...144,126,860
Ensembl chr 7:144,121,744...144,126,857
JBrowse link
small RNA loading onto RISC term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx9 DExH-box helicase 9 ISO (PMID:17531811) RGD PMID:17531811 NCBI chr13:70,885,503...70,922,278
Ensembl chr13:70,885,504...70,922,245
JBrowse link
small-subunit processome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,946,118...43,948,224
Ensembl chr17:43,946,130...43,948,223
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit ISO (PMID:32103174) RGD PMID:32103174 NCBI chr11:89,293,547...89,510,948
Ensembl chr11:89,293,696...89,510,871
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 ISO (PMID:32103174) RGD PMID:32103174 NCBI chr 9:79,659,275...79,748,050
Ensembl chr 9:79,659,251...79,748,078
JBrowse link
spliceosomal complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crnkl1 crooked neck pre-mRNA splicing factor 1 ISO
IBA
ISS
(PMID:12084575)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:12084575, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 6:18,349,226...18,351,540
Ensembl chr 6:18,349,167...18,351,536
JBrowse link
G Ddx39b DExD-box helicase 39B ISO (PMID:18593880) RGD PMID:18593880 NCBI chr20:4,806,103...4,818,600
Ensembl chr20:4,806,108...4,818,568
JBrowse link
G Gcfc2 GC-rich sequence DNA-binding factor 2 ISO (PMID:24304693) RGD PMID:24304693 NCBI chr 4:112,662,556...112,700,505
Ensembl chr 4:112,662,609...112,699,711
JBrowse link
G Gemin2 gem (nuclear organelle) associated protein 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:80,108,751...80,122,382
Ensembl chr 6:80,108,655...80,122,365
JBrowse link
G Gemin6 gem (nuclear organelle) associated protein 6 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:2,907,040...2,911,577
Ensembl chr 6:2,907,145...2,911,559
JBrowse link
G LOC102548514 crooked neck-like protein 1-like ISS
IBA
GO_REF:0000024
PMID:21873635
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 3:140,125,232...140,141,730
Ensembl chr 3:140,126,797...140,141,679
JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 ISO (PMID:23793891) RGD PMID:23793891 NCBI chr 5:61,734,118...61,767,098
Ensembl chr 5:61,734,118...61,766,481
JBrowse link
G Prpf19 pre-mRNA processing factor 19 ISO (PMID:16332694) RGD PMID:16332694 NCBI chr 1:226,947,065...226,958,147
Ensembl chr 1:226,947,105...226,958,144
JBrowse link
G Rbm5 RNA binding motif protein 5 ISO
ISS
(PMID:18951082)
GO_REF:0000024
RGD
UniProt
PMID:18951082 GO_REF:0000024 NCBI chr 8:116,502,941...116,532,178
Ensembl chr 8:116,502,937...116,532,169
JBrowse link
G Scaf11 SR-related CTD-associated factor 11 ISO
IBA
(PMID:9447963)
PMID:21873635
RGD PMID:9447963, PMID:21873635 RGD:13792537 NCBI chr 7:137,804,019...137,856,337
Ensembl chr 7:137,804,019...137,856,485
JBrowse link
G Sf3a2 splicing factor 3a, subunit 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:11,777,826...11,784,373
Ensembl chr 7:11,777,826...11,783,849
JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:61,594,620...61,634,510
Ensembl chr 9:61,594,620...61,634,510
JBrowse link
G Smn1 survival of motor neuron 1, telomeric ISO (PMID:9845364) RGD PMID:9845364 NCBI chr 2:30,360,101...30,371,147
Ensembl chr 2:30,360,100...30,371,147
JBrowse link
G Srpk1 SRSF protein kinase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:5,829,412...5,865,877
Ensembl chr20:5,831,119...5,865,854
JBrowse link
G Srpk2 SRSF protein kinase 2 ISO
IBA
(PMID:9472028)
PMID:21873635
(MGI:MGI:1195449|PMID:9446799)
RGD PMID:9446799, PMID:9472028, PMID:21873635 MGI:MGI:1195449, RGD:13792537 NCBI chr 4:7,994,025...8,187,455
Ensembl chr 4:8,066,737...8,185,935
JBrowse link
G Srpk3 SRSF protein kinase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:157,008,773...157,014,342
Ensembl chr  X:157,008,824...157,013,443
JBrowse link
G Usp39 ubiquitin specific peptidase 39 ISO (PMID:11350945) RGD PMID:11350945 NCBI chr 4:100,181,408...100,211,425
Ensembl chr 4:100,181,455...100,213,858
JBrowse link
G Zrsr2 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 ISO (PMID:21041408) RGD PMID:21041408 NCBI chr  X:32,304,707...32,327,419
Ensembl chr  X:32,304,757...32,328,364
JBrowse link
spliceosomal complex disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx8 DEAH-box helicase 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:89,645,979...89,683,839
Ensembl chr10:89,645,973...89,683,446
JBrowse link
G Tfip11 tuftelin interacting protein 11 ISO
IBA
ISS
(PMID:19103666)
PMID:21873635
GO_REF:0000024
(MGI:MGI:5545993|PMID:19857462)
RGD
UniProt
PMID:19103666, PMID:19857462, PMID:21873635 GO_REF:0000024, MGI:MGI:5545993, RGD:13792537 NCBI chr12:50,320,820...50,333,052
Ensembl chr12:50,320,821...50,333,052
JBrowse link
spliceosomal snRNP assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07042226.1 IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr  X:150,660,743...150,666,309 JBrowse link
G AC096024.2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:141,503,833...141,504,111 JBrowse link
G Clns1a chloride nucleotide-sensitive channel 1A IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:18984161)
Ensembl
UniProt
RGD
PMID:18984161 GO_REF:0000024, GO_REF:0000107 NCBI chr 1:162,676,246...162,696,549
Ensembl chr 1:162,676,269...162,696,544
JBrowse link
G Coil coilin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:76,320,676...76,336,169
Ensembl chr10:76,320,041...76,341,418
JBrowse link
G Ddx20 DEAD-box helicase 20 ISO
IBA
(PMID:18984161)
PMID:21873635
RGD PMID:18984161, PMID:21873635 RGD:13792537 NCBI chr 2:208,144,142...208,154,764
Ensembl chr 2:208,144,139...208,152,179
JBrowse link
G Gemin2 gem (nuclear organelle) associated protein 2 ISO
IBA
ISS
(PMID:18984161)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:18984161, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 6:80,108,751...80,122,382
Ensembl chr 6:80,108,655...80,122,365
JBrowse link
G Gemin4 gem (nuclear organelle) associated protein 4 ISO
IBA
(PMID:18984161)
PMID:21873635
RGD PMID:18984161, PMID:21873635 RGD:13792537 NCBI chr10:64,364,808...64,375,885
Ensembl chr10:64,368,809...64,375,816
JBrowse link
G Gemin5 gem (nuclear organelle) associated protein 5 ISO (PMID:18984161) RGD PMID:18984161 NCBI chr10:43,552,260...43,599,241
Ensembl chr10:43,554,046...43,599,232
JBrowse link
G Gemin6 gem (nuclear organelle) associated protein 6 ISO
IBA
(PMID:18984161)
PMID:21873635
RGD PMID:18984161, PMID:21873635 RGD:13792537 NCBI chr 6:2,907,040...2,911,577
Ensembl chr 6:2,907,145...2,911,559
JBrowse link
G Gemin7 gem (nuclear organelle) associated protein 7 ISO
IBA
(PMID:18984161)
PMID:21873635
RGD PMID:18984161, PMID:21873635 RGD:13792537 NCBI chr 1:80,473,966...80,487,976
Ensembl chr 1:80,473,966...80,483,487
JBrowse link
G Gemin7l1 gem (nuclear organelle) associated protein 7-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:78,954,274...78,955,038
Ensembl chr 4:78,954,599...78,954,997
JBrowse link
G Gemin8 gem (nuclear organelle) associated protein 8 ISO
IBA
(PMID:16434402), (PMID:18984161)
PMID:21873635
RGD PMID:16434402, PMID:18984161, PMID:21873635 RGD:13792537 NCBI chr  X:29,806,605...29,825,439
Ensembl chr  X:29,806,606...29,825,439
JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:20,506,399...20,511,818
Ensembl chr16:20,506,399...20,511,818
JBrowse link
G Prmt5 protein arginine methyltransferase 5 ISO (PMID:17709427) RGD PMID:17709427 NCBI chr15:33,156,508...33,165,893
Ensembl chr15:33,156,492...33,165,895
JBrowse link
G Prmt7 protein arginine methyltransferase 7 ISO
ISS
(PMID:17709427)
GO_REF:0000024
RGD
UniProt
PMID:17709427 GO_REF:0000024 NCBI chr19:38,189,605...38,237,155
Ensembl chr19:38,189,605...38,237,308
JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein NOT ISO (PMID:15314151)
(PMID:14749385), (PMID:15314151)
RGD PMID:14749385, PMID:15314151 NCBI chr12:48,628,198...48,656,096
Ensembl chr12:48,628,278...48,656,096
JBrowse link
G Smn1 survival of motor neuron 1, telomeric ISO
IBA
ISS
(PMID:18984161)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:18984161, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 2:30,360,101...30,371,147
Ensembl chr 2:30,360,100...30,371,147
JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 ISO
ISS
(PMID:18984161)
GO_REF:0000024
RGD
UniProt
PMID:18984161 GO_REF:0000024 NCBI chr 3:122,696,125...122,703,734
Ensembl chr 3:122,695,939...122,703,734
JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C ISO (PMID:8972845) RGD PMID:8972845 NCBI chr20:7,409,401...7,427,581
Ensembl chr20:7,409,401...7,427,581
JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide ISO
IBA
(PMID:18984161)
PMID:21873635
RGD PMID:18984161, PMID:21873635 RGD:13792537 NCBI chr18:1,866,066...1,876,613
Ensembl chr18:1,866,080...1,876,613
JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide ISO
IBA
(PMID:18984161)
PMID:21873635
RGD PMID:18984161, PMID:21873635 RGD:13792537 NCBI chr 1:80,057,140...80,059,990
Ensembl chr 1:80,056,755...80,059,996
JBrowse link
G Snrpd2l small nuclear ribonucleoprotein D2-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:28,872,902...28,873,434
Ensembl chr20:28,873,007...28,873,363
JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide ISO
IBA
(PMID:18984161)
PMID:21873635
RGD PMID:18984161, PMID:21873635 RGD:13792537 NCBI chr20:14,080,562...14,095,644
Ensembl chr20:14,080,565...14,095,181
JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E ISO
IBA
(PMID:18984161)
PMID:21873635
RGD PMID:18984161, PMID:21873635 RGD:13792537 NCBI chr13:50,252,707...50,258,951
Ensembl chr 8:129,371,556...129,371,973
JBrowse link
G Snrpel1 small nuclear ribonucleoprotein polypeptide E-like1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:129,371,546...129,371,994 JBrowse link
G Snrpep2 small nuclear ribonucleoprotein polypeptide E pseudogene 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:141,503,818...141,504,126 JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F ISO (PMID:18984161) RGD PMID:18984161 NCBI chr 7:34,478,331...34,485,034
Ensembl chr 7:34,478,331...34,485,034
JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G ISO (PMID:18984161) RGD PMID:18984161 NCBI chr 4:118,167,267...118,174,846
Ensembl chr 4:118,167,294...118,174,842
JBrowse link
G Strap serine/threonine kinase receptor associated protein ISO
IBA
ISS
(PMID:18984161)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:18984161, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 4:171,730,629...171,744,877
Ensembl chr 4:171,730,635...171,745,377
JBrowse link
G Tdrd6 tudor domain containing 6 ISO (MGI:MGI:5904379|PMID:28263986) RGD PMID:28263986 MGI:MGI:5904379 NCBI chr 9:19,917,613...19,932,888
Ensembl chr 9:19,917,603...19,932,920
JBrowse link
spliceosomal tri-snRNP complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aar2 AAR2 splicing factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:152,626,738...152,648,365
Ensembl chr 3:152,626,757...152,649,609
JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated ISO (PMID:10523320) RGD PMID:10523320 NCBI chr20:4,966,817...4,970,567
Ensembl chr20:4,966,817...4,970,568
JBrowse link
G Prpf19 pre-mRNA processing factor 19 ISO
ISS
(PMID:20595234)
GO_REF:0000024
RGD
UniProt
PMID:20595234 GO_REF:0000024 NCBI chr 1:226,947,065...226,958,147
Ensembl chr 1:226,947,105...226,958,144
JBrowse link
G Prpf3 pre-mRNA processing factor 3 ISO (PMID:20595234) RGD PMID:20595234 NCBI chr 2:197,947,010...197,971,464
Ensembl chr 2:197,947,010...197,971,463
JBrowse link
G Prpf31 pre-mRNA processing factor 31 ISO (PMID:11867543), (PMID:15257298) RGD PMID:11867543, PMID:15257298 NCBI chr 1:64,150,786...64,162,461
Ensembl chr 1:64,150,786...64,162,461
JBrowse link
G Prpf6 pre-mRNA processing factor 6 ISO
IBA
(PMID:15257298)
PMID:21873635
RGD PMID:15257298, PMID:21873635 RGD:13792537 NCBI chr 3:177,098,137...177,162,937
Ensembl chr 3:177,098,073...177,162,916
JBrowse link
G Prpf8 pre-mRNA processing factor 8 ISO
IBA
(PMID:20595234)
PMID:21873635
RGD PMID:20595234, PMID:21873635 RGD:13792537 NCBI chr10:63,635,239...63,658,360
Ensembl chr10:63,635,219...63,658,361
JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein ISO (PMID:12032085), (PMID:20595234) RGD PMID:12032085, PMID:20595234 NCBI chr12:48,628,198...48,656,096
Ensembl chr12:48,628,278...48,656,096
JBrowse link
G Usp4 ubiquitin specific peptidase 4 ISO
ISS
(PMID:20595234)
GO_REF:0000024
RGD
UniProt
PMID:20595234 GO_REF:0000024 NCBI chr 8:117,126,692...117,171,012
Ensembl chr 8:117,126,692...117,171,012
JBrowse link
spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:119,640,324...119,669,651
Ensembl chr 3:119,640,298...119,669,639
JBrowse link
stress granule disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dyrk3 dual specificity tyrosine phosphorylation regulated kinase 3 IEA
IBA
ISO
ISS
GO_REF:0000107
PMID:21873635
(PMID:23415227), (PMID:29973724)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:23415227, PMID:29973724, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr13:47,906,230...47,916,877
Ensembl chr13:47,906,231...47,916,877
JBrowse link
G Kif5b kinesin family member 5B ISO (MGI:MGI:4397616|PMID:19825938) RGD PMID:19825938 MGI:MGI:4397616 NCBI chr17:54,181,416...54,219,048
Ensembl chr17:54,181,419...54,212,096
JBrowse link
G Klc1 kinesin light chain 1 ISO (MGI:MGI:4397616|PMID:19825938) RGD PMID:19825938 MGI:MGI:4397616 NCBI chr 6:136,330,151...136,373,716
Ensembl chr 6:136,330,383...136,373,721
JBrowse link
G Vcp valosin-containing protein ISS
ISO
GO_REF:0000024
(PMID:29804830)
UniProt
RGD
PMID:29804830 GO_REF:0000024 NCBI chr 5:58,426,548...58,445,953
Ensembl chr 5:58,426,549...58,445,953
JBrowse link
G Zfand1 zinc finger AN1-type containing 1 ISO (PMID:29804830) RGD PMID:29804830 NCBI chr 2:93,656,895...93,666,745
Ensembl chr 2:93,656,946...93,665,939
JBrowse link
targeting of mRNA for destruction involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 ISO
ISS
(PMID:17495927)
GO_REF:0000024
RGD
UniProt
PMID:17495927 GO_REF:0000024 NCBI chr 3:72,125,269...72,137,122
Ensembl chr 3:72,125,273...72,128,973
JBrowse link
G Dhx9 DExH-box helicase 9 ISO (PMID:17531811) RGD PMID:17531811 NCBI chr13:70,885,503...70,922,278
Ensembl chr13:70,885,504...70,922,245
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO (PMID:15973356), (PMID:17452327) RGD PMID:15973356, PMID:17452327 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex ISO
ISS
(PMID:15973356)
GO_REF:0000024
RGD
UniProt
PMID:15973356 GO_REF:0000024 NCBI chr 7:144,121,688...144,126,860
Ensembl chr 7:144,121,744...144,126,857
JBrowse link
telomerase holoenzyme complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 ISO (PMID:10197982) RGD PMID:10197982 NCBI chr 6:135,107,262...135,112,793
Ensembl chr 6:135,107,271...135,112,775
JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 ISO (PMID:10197982) RGD PMID:10197982 NCBI chr 9:17,817,791...17,823,163
Ensembl chr 9:17,817,721...17,823,243
JBrowse link
G Naf1 nuclear assembly factor 1 ribonucleoprotein ISO
IEA
(PMID:27510903)
GO_REF:0000107
RGD
Ensembl
PMID:27510903 GO_REF:0000107 NCBI chr16:24,582,000...24,612,773
Ensembl chr16:24,578,678...24,612,732
JBrowse link
G Ptges3 prostaglandin E synthase 3 ISO
IBA
(PMID:10197982)
PMID:21873635
(MGI:MGI:5819359|PMID:10197982)
RGD PMID:10197982, PMID:21873635 MGI:MGI:5819359, RGD:13792537 NCBI chr 7:2,479,267...2,497,024
Ensembl chr 7:2,479,311...2,497,013
JBrowse link
G Ptges3l1 prostaglandin E synthase 3-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:45,410,545...45,419,817
Ensembl chr  X:45,410,546...45,419,817
JBrowse link
U2-type prespliceosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sf3a1 splicing factor 3a, subunit 1 ISO (PMID:10882114), (PMID:11533230) RGD PMID:10882114, PMID:11533230 NCBI chr14:84,393,182...84,413,931
Ensembl chr14:84,393,182...84,413,931
JBrowse link
G Sf3a2 splicing factor 3a, subunit 2 ISO
ISS
(PMID:11533230)
GO_REF:0000024
RGD
UniProt
PMID:11533230 GO_REF:0000024 NCBI chr 7:11,777,826...11,784,373
Ensembl chr 7:11,777,826...11,783,849
JBrowse link
G Sf3a3 splicing factor 3a, subunit 3 ISO (PMID:11533230) RGD PMID:11533230 NCBI chr 5:142,702,721...142,722,350
Ensembl chr 5:142,702,685...142,722,341
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20017
    cellular process 18791
      cellular component organization or biogenesis 6765
        cellular component organization 6509
          protein-containing complex subunit organization 1808
            ribonucleoprotein complex subunit organization 276
              protein-RNA complex remodeling 0
              ribonucleoprotein complex assembly + 269
              ribonucleoprotein complex disassembly + 7
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.