ONTOLOGY REPORT - ANNOTATIONS


Term:DNA biosynthetic process
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Accession:GO:0071897 term browser browse the term
Definition:The cellular DNA metabolic process resulting in the formation of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.
Synonyms:exact_synonym: DNA anabolism;   DNA biosynthesis;   DNA formation;   DNA synthesis


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DNA biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccn2 cellular communication network factor 2 JBrowse link 1 21,851,657 21,854,773 RGD:1600115
G Dntt DNA nucleotidylexotransferase JBrowse link 1 260,289,626 260,321,174 RGD:1600115
G Lig1 DNA ligase 1 JBrowse link 1 75,356,212 75,394,757 RGD:1600115
G Lig3 DNA ligase 3 JBrowse link 10 70,134,734 70,158,051 RGD:1600115
G Lig4 DNA ligase 4 JBrowse link 16 85,331,771 85,339,496 RGD:1600115
G LOC100362333 DNA-directed DNA polymerase epsilon 3 JBrowse link 7 118,816,053 118,816,725 RGD:1600115
G LOC100911727 DNA ligase 1-like JBrowse link 1 75,224,143 75,264,441 RGD:1600115
G Lox lysyl oxidase JBrowse link 18 47,500,320 47,577,819 RGD:1624291
RGD:1600115
G Pam16 presequence translocase associated motor 16 JBrowse link 10 11,146,359 11,153,936 RGD:1624291
G Phb prohibitin JBrowse link 10 83,476,107 83,488,878 RGD:1624291
RGD:1600115
G Pola1 DNA polymerase alpha 1, catalytic subunit JBrowse link X 62,382,604 62,698,830 RGD:7247275
RGD:1600115
G Pola2 DNA polymerase alpha 2, accessory subunit JBrowse link 1 221,297,417 221,321,601 RGD:1600115
G Polb DNA polymerase beta JBrowse link 16 74,237,001 74,260,272 RGD:1600115
G Pold1 DNA polymerase delta 1, catalytic subunit JBrowse link 1 100,538,066 100,554,105 RGD:7247274
RGD:1600115
G Pold2 DNA polymerase delta 2, accessory subunit JBrowse link 14 86,111,416 86,117,578 RGD:1600115
G Pold4 DNA polymerase delta 4, accessory subunit JBrowse link 1 219,480,841 219,483,244 RGD:1600115
G Pole DNA polymerase epsilon, catalytic subunit JBrowse link 12 52,403,533 52,452,075 RGD:7247274
G Pole3 DNA polymerase epsilon 3, accessory subunit JBrowse link 5 78,380,813 78,384,047 RGD:1600115
G Polg DNA polymerase gamma, catalytic subunit JBrowse link 1 141,172,117 141,188,893 RGD:1600115
G Polg2 DNA polymerase gamma 2, accessory subunit JBrowse link 10 94,968,836 94,979,259 RGD:1600115
G Poll DNA polymerase lambda JBrowse link 1 265,290,337 265,298,847 RGD:1624291
RGD:1600115
G Polm DNA polymerase mu JBrowse link 14 86,069,378 86,079,327 RGD:1600115
G Poln DNA polymerase nu JBrowse link 14 81,837,764 82,037,999 RGD:1600115
G Polq DNA polymerase theta JBrowse link 11 66,585,860 66,695,369 RGD:1600115
G Smpd3 sphingomyelin phosphodiesterase 3 JBrowse link 19 38,237,963 38,321,572 RGD:1624291
RGD:1600115
G Sphk1 sphingosine kinase 1 JBrowse link 10 105,498,728 105,504,401 RGD:1624291
G Tert telomerase reverse transcriptase JBrowse link 1 32,250,876 32,275,330 RGD:1624291
G Tk1 thymidine kinase 1 JBrowse link 10 106,817,556 106,828,888 RGD:1600115
DNA synthesis involved in DNA repair term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pola1 DNA polymerase alpha 1, catalytic subunit JBrowse link X 62,382,604 62,698,830 RGD:1624291
G Pold1 DNA polymerase delta 1, catalytic subunit JBrowse link 1 100,538,066 100,554,105 RGD:1624291
G Pole DNA polymerase epsilon, catalytic subunit JBrowse link 12 52,403,533 52,452,075 RGD:1624291
RGD:1600115
G Polh DNA polymerase eta JBrowse link 9 17,163,354 17,198,006 RGD:1624291
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:1624291
G Wrn Werner syndrome RecQ like helicase JBrowse link 16 62,483,773 62,619,018 RGD:1624291
RGD:1600115
G Wrnip1 Werner helicase interacting protein 1 JBrowse link 17 32,933,395 32,953,641 RGD:1600115
RGD:1624291
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pola1 DNA polymerase alpha 1, catalytic subunit JBrowse link X 62,382,604 62,698,830 RGD:1600115
RGD:1624291
G Pold3 DNA polymerase delta 3, accessory subunit JBrowse link 1 165,085,142 165,122,385 RGD:13792537
G Trex1 three prime repair exonuclease 1 JBrowse link 8 117,796,127 117,797,427 RGD:1624291
RGD:1600115
error-prone translesion synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pole2 DNA polymerase epsilon 2, accessory subunit JBrowse link 6 91,494,348 91,532,355 RGD:13792537
G Polh DNA polymerase eta JBrowse link 9 17,163,354 17,198,006 RGD:13792537
G Polk DNA polymerase kappa JBrowse link 2 27,305,718 27,364,906 RGD:1624291
RGD:13792537
G Rev1 REV1, DNA directed polymerase JBrowse link 9 44,714,137 44,786,330 RGD:1624291
RGD:1600115
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit JBrowse link 20 44,803,664 44,961,362 RGD:13792537
meiotic DNA repair synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Spata22 spermatogenesis associated 22 JBrowse link 10 59,893,064 59,910,769 RGD:1624291
RGD:1600115
G Sycp1 synaptonemal complex protein 1 JBrowse link 2 205,274,766 205,426,869 RGD:1624291
RGD:1600115
G Sycp3 synaptonemal complex protein 3 JBrowse link 7 29,029,887 29,044,344 RGD:1624291
G Tex12 testis expressed 12 JBrowse link 8 54,991,501 54,999,454 RGD:1624291
RGD:1600115
negative regulation of DNA biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acvrl1 activin A receptor like type 1 JBrowse link 7 142,769,942 142,787,336 RGD:1624291
RGD:1600115
G Adipoq adiponectin, C1Q and collagen domain containing JBrowse link 11 81,330,845 81,344,488 RGD:1624291
RGD:1600115
G Ahr aryl hydrocarbon receptor JBrowse link 6 54,963,990 55,001,806 RGD:625678
G Ankrd1 ankyrin repeat domain 1 JBrowse link 1 254,726,985 254,745,673 RGD:1624291
RGD:1600115
G Bmpr2 bone morphogenetic protein receptor type 2 JBrowse link 9 66,568,074 66,683,019 RGD:1624291
RGD:1600115
G Chek1 checkpoint kinase 1 JBrowse link 8 39,181,162 39,201,588 RGD:2316115
G Dach1 dachshund family transcription factor 1 JBrowse link 15 82,095,003 82,482,272 RGD:1624291
RGD:1600115
G Dnajc2 DnaJ heat shock protein family (Hsp40) member C2 JBrowse link 4 9,881,505 9,908,693 RGD:1624291
RGD:1600115
G Dusp1 dual specificity phosphatase 1 JBrowse link 10 16,970,642 16,973,425 RGD:7771571
G Gdf2 growth differentiation factor 2 JBrowse link 16 10,267,510 10,293,545 RGD:1624291
RGD:1600115
G Gja1 gap junction protein, alpha 1 JBrowse link 20 37,876,650 37,889,097 RGD:8662403
G Kcnk2 potassium two pore domain channel subfamily K member 2 JBrowse link 13 107,690,111 107,886,476 RGD:9831181
G Niban2 niban apoptosis regulator 2 JBrowse link 3 11,921,715 11,971,327 RGD:1624291
RGD:1600115
G Nppc natriuretic peptide C JBrowse link 9 93,731,436 93,735,636 RGD:1580115
G Rgn regucalcin JBrowse link X 1,833,484 1,848,904 RGD:9590199
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:70312
negative regulation of telomerase activity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cers1 ceramide synthase 1 JBrowse link 16 20,845,580 20,860,789 RGD:1624291
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit JBrowse link 10 2,010,140 2,037,953 RGD:1624291
G Mcrs1 microspherule protein 1 JBrowse link 7 140,910,420 140,919,234 RGD:1624291
G Men1 menin 1 JBrowse link 1 221,704,394 221,710,343 RGD:1624291
RGD:1600115
G Pif1 PIF1 5'-to-3' DNA helicase JBrowse link 8 71,124,477 71,133,460 RGD:1624291
RGD:1600115
G Pinx1 PIN2/TERF1 interacting, telomerase inhibitor 1 JBrowse link 15 47,211,682 47,270,343 RGD:1624291
RGD:1600115
G Pml promyelocytic leukemia JBrowse link 8 63,002,515 63,034,310 RGD:1624291
G Pot1 protection of telomeres 1 JBrowse link 4 51,888,632 51,946,764 RGD:1624291
RGD:13792537
G Pot1b protection of telomeres 1B JBrowse link 9 7,845,697 7,902,270 RGD:13792537
G Pparg peroxisome proliferator-activated receptor gamma JBrowse link 4 147,274,055 147,399,383 RGD:1580657
G Src SRC proto-oncogene, non-receptor tyrosine kinase JBrowse link 3 153,547,807 153,595,643 RGD:1624291
RGD:1600115
G Ten1 TEN1 subunit of CST complex JBrowse link 10 105,073,077 105,095,094 RGD:1600115
G Terf1 telomeric repeat binding factor 1 JBrowse link 5 2,853,455 2,882,731 RGD:1624291
RGD:1600115
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1624291
negative regulation of telomerase RNA reverse transcriptase activity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Parp3 poly (ADP-ribose) polymerase family, member 3 JBrowse link 8 115,173,440 115,179,543 RGD:1600115
RGD:1624291
negative regulation of telomere maintenance via telomerase term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acd ACD, shelterin complex subunit and telomerase recruitment factor JBrowse link 19 37,665,289 37,668,043 RGD:1624291
RGD:13792537
G Ctc1 CST telomere replication complex component 1 JBrowse link 10 55,596,172 55,616,873 RGD:1624291
RGD:1600115
G Dcp2 decapping mRNA 2 JBrowse link 18 35,489,274 35,671,676 RGD:1624291
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:1624291
RGD:1600115
G Gnl3l G protein nucleolar 3 like JBrowse link X 20,037,558 20,070,505 RGD:1624291
RGD:1600115
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link 7 144,865,302 144,871,592 RGD:1624291
RGD:1600115
G Hnrnpc heterogeneous nuclear ribonucleoprotein C JBrowse link 15 28,486,605 28,517,353 RGD:1624291
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link 13 96,222,093 96,238,845 RGD:1624291
RGD:13792537
RGD:1600115
G Nat10 N-acetyltransferase 10 JBrowse link 3 93,658,119 93,698,136 RGD:1624291
RGD:1600115
G Pif1 PIF1 5'-to-3' DNA helicase JBrowse link 8 71,124,477 71,133,460 RGD:1624291
RGD:1600115
G Pinx1 PIN2/TERF1 interacting, telomerase inhibitor 1 JBrowse link 15 47,211,682 47,270,343 RGD:1624291
RGD:1600115
G Pml promyelocytic leukemia JBrowse link 8 63,002,515 63,034,310 RGD:1624291
G Pot1 protection of telomeres 1 JBrowse link 4 51,888,632 51,946,764 RGD:1624291
G Src SRC proto-oncogene, non-receptor tyrosine kinase JBrowse link 3 153,547,807 153,595,643 RGD:1624291
RGD:1600115
G Stn1 STN1 subunit of CST complex JBrowse link 1 267,281,786 267,315,714 RGD:1600115
RGD:1624291
G Ten1 TEN1 subunit of CST complex JBrowse link 10 105,073,077 105,095,094 RGD:1624291
RGD:13792537
G Tent4b terminal nucleotidyltransferase 4B JBrowse link 19 19,771,289 19,834,759 RGD:1624291
RGD:1600115
G Terf1 telomeric repeat binding factor 1 JBrowse link 5 2,853,455 2,882,731 RGD:1624291
RGD:1600115
G Terf2 telomeric repeat binding factor 2 JBrowse link 19 39,271,992 39,301,506 RGD:1624291
RGD:1600115
G Tinf2 TERF1 interacting nuclear factor 2 JBrowse link 15 34,358,697 34,365,085 RGD:1624291
RGD:1600115
positive regulation of DNA biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arrb2 arrestin, beta 2 JBrowse link 10 57,040,252 57,048,045 RGD:5509898
G C3ar1 complement C3a receptor 1 JBrowse link 4 155,681,767 155,691,240 RGD:7411623
G Camk2d calcium/calmodulin-dependent protein kinase II delta JBrowse link 2 230,900,907 231,132,207 RGD:2303063
G Crhr2 corticotropin releasing hormone receptor 2 JBrowse link 4 85,286,371 85,329,374 RGD:5131269
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 JBrowse link 6 2,308,179 2,316,739 RGD:7829726
G Ddx39b DExD-box helicase 39B JBrowse link 20 4,806,103 4,818,600 RGD:10401140
G Egf epidermal growth factor JBrowse link 2 68,820,616 68,895,537 RGD:10395243
G Fgf2 fibroblast growth factor 2 JBrowse link 2 124,081,072 124,134,133 RGD:1624291
G Fgfr4 fibroblast growth factor receptor 4 JBrowse link 17 9,990,072 10,004,339 RGD:1624291
RGD:1600115
G Gfer growth factor, augmenter of liver regeneration JBrowse link 10 14,059,347 14,061,703 RGD:9685728
G Gsk3b glycogen synthase kinase 3 beta JBrowse link 11 65,060,884 65,208,842 RGD:10045365
G Hgf hepatocyte growth factor JBrowse link 4 15,435,460 15,505,377 RGD:1624291
RGD:1600115
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link 7 102,586,313 102,591,240 RGD:1624291
RGD:1600115
G Nox4 NADPH oxidase 4 JBrowse link 1 150,796,359 150,976,186 RGD:1624291
RGD:1600115
G Pak3 p21 (RAC1) activated kinase 3 JBrowse link X 114,784,452 115,042,683 RGD:7775030
G Pdgfb platelet derived growth factor subunit B JBrowse link 7 121,215,458 121,233,092 RGD:1600115
RGD:1624291
G Pdgfrb platelet derived growth factor receptor beta JBrowse link 18 56,364,586 56,406,381 RGD:1624291
RGD:1600115
G Prkd2 protein kinase D2 JBrowse link 1 78,767,911 78,796,223 RGD:1624291
RGD:1600115
G Ptk2b protein tyrosine kinase 2 beta JBrowse link 15 42,827,306 42,947,796 RGD:10041071
G Rgcc regulator of cell cycle JBrowse link 15 61,551,861 61,564,695 RGD:633887
G Smoc2 SPARC related modular calcium binding 2 JBrowse link 1 56,242,289 56,374,106 RGD:1600115
RGD:1624291
G Src SRC proto-oncogene, non-receptor tyrosine kinase JBrowse link 3 153,547,807 153,595,643 RGD:8553998
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:1624291
positive regulation of DNA-directed DNA polymerase activity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chtf18 chromosome transmission fidelity factor 18 JBrowse link 10 15,090,762 15,098,825 RGD:1624291
RGD:1600115
G Chtf8 chromosome transmission fidelity factor 8 JBrowse link 19 39,077,580 39,087,880 RGD:1624291
RGD:1600115
G Dscc1 DNA replication and sister chromatid cohesion 1 JBrowse link 7 94,759,076 94,774,787 RGD:1624291
RGD:1600115
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:11535022
G Rfc2 replication factor C subunit 2 JBrowse link 12 25,130,375 25,143,480 RGD:1624291
RGD:1600115
G Rfc3 replication factor C subunit 3 JBrowse link 12 1,460,581 1,471,344 RGD:1624291
RGD:1600115
G Rfc4 replication factor C subunit 4 JBrowse link 11 81,358,592 81,373,044 RGD:1624291
RGD:1600115
G Rfc5 replication factor C subunit 5 JBrowse link 12 44,931,494 44,941,051 RGD:1624291
RGD:1600115
positive regulation of telomerase activity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acd ACD, shelterin complex subunit and telomerase recruitment factor JBrowse link 19 37,665,289 37,668,043 RGD:1624291
RGD:13792537
G Aurkb aurora kinase B JBrowse link 10 55,625,860 55,632,399 RGD:1624291
RGD:1600115
G Cct2 chaperonin containing TCP1 subunit 2 JBrowse link 7 60,106,532 60,122,779 RGD:1624291
RGD:1600115
G Cct4 chaperonin containing TCP1 subunit 4 JBrowse link 14 107,767,392 107,780,270 RGD:1624291
RGD:1600115
G Ctnnb1 catenin beta 1 JBrowse link 8 129,601,511 129,628,378 RGD:1624291
RGD:1600115
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:1624291
G Grem1 gremlin 1, DAN family BMP antagonist JBrowse link 3 105,203,309 105,214,989 RGD:1624291
RGD:1600115
G Grhl2 grainyhead-like transcription factor 2 JBrowse link 7 76,058,623 76,197,360 RGD:1624291
RGD:1600115
G Hmbox1 homeobox containing 1 JBrowse link 15 48,194,709 48,326,310 RGD:1624291
RGD:13792537
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 JBrowse link 6 135,107,262 135,112,793 RGD:1624291
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 JBrowse link 9 17,817,791 17,823,163 RGD:1624291
RGD:1600115
G Klf4 Kruppel like factor 4 JBrowse link 5 72,283,311 72,287,669 RGD:1624291
RGD:1600115
G Map2k7 mitogen activated protein kinase kinase 7 JBrowse link 12 2,546,278 2,555,310 RGD:1624291
RGD:1600115
G Map3k4 mitogen activated protein kinase kinase kinase 4 JBrowse link 1 48,625,714 48,711,642 RGD:1624291
RGD:1600115
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:1624291
RGD:1600115
G Mapk15 mitogen-activated protein kinase 15 JBrowse link 7 117,041,287 117,061,799 RGD:1624291
RGD:1600115
G Mapk3 mitogen activated protein kinase 3 JBrowse link 1 198,192,773 198,198,975 RGD:1624291
RGD:1600115
G Mapkapk5 mitogen-activated protein kinase-activated protein kinase 5 JBrowse link 12 40,510,378 40,529,332 RGD:1624291
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link 7 102,586,313 102,591,240 RGD:1624291
G Naf1 nuclear assembly factor 1 ribonucleoprotein JBrowse link 16 24,582,000 24,612,773 RGD:1624291
RGD:1600115
G Nek2 NIMA-related kinase 2 JBrowse link 13 110,511,546 110,524,750 RGD:1624291
G Nek2l1 NIMA (never in mitosis gene a)-related kinase 2-like 1 JBrowse link 8 15,940,934 15,942,589 RGD:1600115
G Nek7 NIMA-related kinase 7 JBrowse link 13 55,485,759 55,617,534 RGD:1624291
RGD:1600115
G Nvl nuclear VCP-like JBrowse link 13 99,410,026 99,468,783 RGD:1624291
RGD:13792537
G Parm1 prostate androgen-regulated mucin-like protein 1 JBrowse link 14 17,972,914 18,076,870 RGD:8553456
G Parn poly(A)-specific ribonuclease JBrowse link 10 1,309,724 1,461,123 RGD:1624291
RGD:1600115
G Pkib cAMP-dependent protein kinase inhibitor beta JBrowse link 20 40,616,868 40,712,598 RGD:1624291
RGD:1600115
G Pnkp polynucleotide kinase 3'-phosphatase JBrowse link 1 100,853,475 100,859,202 RGD:1624291
RGD:1600115
G Pot1 protection of telomeres 1 JBrowse link 4 51,888,632 51,946,764 RGD:1624291
G Prkcq protein kinase C, theta JBrowse link 17 70,971,915 71,105,286 RGD:1624291
RGD:1600115
G Ptges3 prostaglandin E synthase 3 JBrowse link 7 2,479,267 2,497,024 RGD:1624291
RGD:1600115
G Tcp1 t-complex 1 JBrowse link 1 48,025,664 48,033,343 RGD:1624291
RGD:1600115
G Tnks tankyrase JBrowse link 16 60,925,093 61,067,192 RGD:1624291
RGD:1600115
G Wrap53 WD repeat containing, antisense to TP53 JBrowse link 10 56,169,024 56,185,800 RGD:1600115
RGD:1624291
positive regulation of telomerase RNA reverse transcriptase activity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 4 81,237,496 81,241,281 RGD:11567256
G Hnrnpd heterogeneous nuclear ribonucleoprotein D JBrowse link 14 11,256,163 11,274,684 RGD:1624291
RGD:1600115
positive regulation of telomere maintenance via telomerase term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acd ACD, shelterin complex subunit and telomerase recruitment factor JBrowse link 19 37,665,289 37,668,043 RGD:1624291
RGD:1600115
G Atm ATM serine/threonine kinase JBrowse link 8 58,015,938 58,119,973 RGD:1624291
RGD:1600115
G Atr ATR serine/threonine kinase JBrowse link 8 103,673,578 103,770,886 RGD:1624291
G Aurkb aurora kinase B JBrowse link 10 55,625,860 55,632,399 RGD:1624291
RGD:1600115
G Cct2 chaperonin containing TCP1 subunit 2 JBrowse link 7 60,106,532 60,122,779 RGD:1624291
RGD:1600115
G Cct3 chaperonin containing TCP1 subunit 3 JBrowse link 2 187,669,051 187,693,610 RGD:1624291
RGD:1600115
G Cct4 chaperonin containing TCP1 subunit 4 JBrowse link 14 107,767,392 107,780,270 RGD:1624291
RGD:1600115
G Cct5 chaperonin containing TCP1 subunit 5 JBrowse link 2 84,667,578 84,678,730 RGD:1624291
RGD:1600115
G Cct6a chaperonin containing TCP1 subunit 6A JBrowse link 12 30,491,584 30,501,813 RGD:1624291
RGD:1600115
G Cct7 chaperonin containing TCP1 subunit 7 JBrowse link 4 117,235,023 117,252,265 RGD:1624291
RGD:1600115
G Cct8 chaperonin containing TCP1 subunit 8 JBrowse link 11 27,130,172 27,141,881 RGD:1624291
RGD:1600115
G Ctnnb1 catenin beta 1 JBrowse link 8 129,601,511 129,628,378 RGD:1624291
RGD:1600115
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:1624291
G Fbxo4 F-box protein 4 JBrowse link 2 53,797,954 53,811,134 RGD:1624291
RGD:1600115
G Hmbox1 homeobox containing 1 JBrowse link 15 48,194,709 48,326,310 RGD:1624291
RGD:13792537
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link 7 144,865,302 144,871,592 RGD:1624291
RGD:1600115
G Map2k7 mitogen activated protein kinase kinase 7 JBrowse link 12 2,546,278 2,555,310 RGD:1624291
RGD:1600115
G Map3k4 mitogen activated protein kinase kinase kinase 4 JBrowse link 1 48,625,714 48,711,642 RGD:1624291
RGD:1600115
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:1624291
RGD:1600115
G Mapk15 mitogen-activated protein kinase 15 JBrowse link 7 117,041,287 117,061,799 RGD:1624291
RGD:1600115
G Mapk3 mitogen activated protein kinase 3 JBrowse link 1 198,192,773 198,198,975 RGD:1624291
RGD:1600115
G Mapkapk5 mitogen-activated protein kinase-activated protein kinase 5 JBrowse link 12 40,510,378 40,529,332 RGD:1624291
G Nek2 NIMA-related kinase 2 JBrowse link 13 110,511,546 110,524,750 RGD:1624291
G Nek2l1 NIMA (never in mitosis gene a)-related kinase 2-like 1 JBrowse link 8 15,940,934 15,942,589 RGD:1600115
G Nek7 NIMA-related kinase 7 JBrowse link 13 55,485,759 55,617,534 RGD:1624291
RGD:1600115
G Parn poly(A)-specific ribonuclease JBrowse link 10 1,309,724 1,461,123 RGD:1624291
RGD:1600115
G Pkib cAMP-dependent protein kinase inhibitor beta JBrowse link 20 40,616,868 40,712,598 RGD:1624291
RGD:1600115
G Pnkp polynucleotide kinase 3'-phosphatase JBrowse link 1 100,853,475 100,859,202 RGD:1624291
RGD:1600115
G Pot1 protection of telomeres 1 JBrowse link 4 51,888,632 51,946,764 RGD:1624291
G Prkcq protein kinase C, theta JBrowse link 17 70,971,915 71,105,286 RGD:1624291
RGD:1600115
G Tcp1 t-complex 1 JBrowse link 1 48,025,664 48,033,343 RGD:1624291
RGD:1600115
G Terc telomerase RNA component JBrowse link 2 116,432,723 116,433,110 RGD:1624291
G Tnks tankyrase JBrowse link 16 60,925,093 61,067,192 RGD:1624291
RGD:1600115
G Xrcc5 X-ray repair cross complementing 5 JBrowse link 9 79,659,275 79,748,050 RGD:1624291
RGD:1600115
regulation of DNA biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdkn1a cyclin-dependent kinase inhibitor 1A JBrowse link 20 6,348,422 6,358,864 RGD:1624291
RGD:1600115
G Pdgfa platelet derived growth factor subunit A JBrowse link 12 17,734,141 17,756,186 RGD:1600115
RGD:1624291
G Sh2b1 SH2B adaptor protein 1 JBrowse link 1 197,878,839 197,888,223 RGD:1624291
RGD:1600115
G Tfdp1 transcription factor Dp-1 JBrowse link 16 81,088,642 81,127,244 RGD:1624291
RGD:1600115
G Tom1l1 target of myb1 like 1 membrane trafficking protein JBrowse link 10 78,173,847 78,219,805 RGD:1624291
regulation of telomerase activity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atm ATM serine/threonine kinase JBrowse link 8 58,015,938 58,119,973 RGD:1624291
G Hmbox1 homeobox containing 1 JBrowse link 15 48,194,709 48,326,310 RGD:1624291
G Nabp2 nucleic acid binding protein 2 JBrowse link 7 2,820,006 2,825,627 RGD:1624291
G Parp4 poly (ADP-ribose) polymerase family, member 4 JBrowse link 15 36,809,362 36,911,167 RGD:1624291
regulation of telomere maintenance via telomerase term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atm ATM serine/threonine kinase JBrowse link 8 58,015,938 58,119,973 RGD:1624291
G Pot1 protection of telomeres 1 JBrowse link 4 51,888,632 51,946,764 RGD:1624291
RGD:13792537
G Pot1b protection of telomeres 1B JBrowse link 9 7,845,697 7,902,270 RGD:13792537
G Smg5 SMG5 nonsense mediated mRNA decay factor JBrowse link 2 187,708,247 187,735,355 RGD:13792537
G Smg6 SMG6 nonsense mediated mRNA decay factor JBrowse link 10
10
61,526,024
61,771,912
61,542,583
62,007,030
RGD:13792537
G Smg7 SMG7 nonsense mediated mRNA decay factor JBrowse link 13 70,258,919 70,321,886 RGD:13792537
G Terf2 telomeric repeat binding factor 2 JBrowse link 19 39,271,992 39,301,506 RGD:1624291
RGD:13792537
RNA-dependent DNA biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tep1 telomerase associated protein 1 JBrowse link 15 27,751,186 27,798,839 RGD:1299082
RGD:1600115
G Terf2 telomeric repeat binding factor 2 JBrowse link 19 39,271,992 39,301,506 RGD:1600115
G Tert telomerase reverse transcriptase JBrowse link 1 32,250,876 32,275,330 RGD:1624291
telomere maintenance via telomerase term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:1600115
RGD:1624291
G Gar1 GAR1 ribonucleoprotein JBrowse link 2 235,250,453 235,258,464 RGD:1600115
RGD:1624291
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 JBrowse link 6 135,107,262 135,112,793 RGD:1624291
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 JBrowse link 9 17,817,791 17,823,163 RGD:1624291
RGD:1600115
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:1624291
G Nop10 NOP10 ribonucleoprotein JBrowse link 3 103,747,654 103,748,739 RGD:1624291
RGD:1600115
G Parp4 poly (ADP-ribose) polymerase family, member 4 JBrowse link 15 36,809,362 36,911,167 RGD:1624291
G Pinx1 PIN2/TERF1 interacting, telomerase inhibitor 1 JBrowse link 15 47,211,682 47,270,343 RGD:1624291
RGD:1600115
G Pot1 protection of telomeres 1 JBrowse link 4 51,888,632 51,946,764 RGD:1624291
G Ptges3 prostaglandin E synthase 3 JBrowse link 7 2,479,267 2,497,024 RGD:1624291
RGD:13792537
G Ptges3l1 prostaglandin E synthase 3-like 1 JBrowse link X 45,410,545 45,419,817 RGD:13792537
G Rad50 RAD50 double strand break repair protein JBrowse link 10 39,002,130 39,054,042 RGD:1624291
RGD:13792537
RGD:1600115
G Rpa1 replication protein A1 JBrowse link 10 62,140,419 62,191,518 RGD:13792537
G Smg5 SMG5 nonsense mediated mRNA decay factor JBrowse link 2 187,708,247 187,735,355 RGD:13792537
G Smg6 SMG6 nonsense mediated mRNA decay factor JBrowse link 10
10
61,526,024
61,771,912
61,542,583
62,007,030
RGD:13792537
G Smg7 SMG7 nonsense mediated mRNA decay factor JBrowse link 13 70,258,919 70,321,886 RGD:13792537
G Tep1 telomerase associated protein 1 JBrowse link 15 27,751,186 27,798,839 RGD:1624291
G Terc telomerase RNA component JBrowse link 2 116,432,723 116,433,110 RGD:1299555
RGD:1624291
G Terf1 telomeric repeat binding factor 1 JBrowse link 5 2,853,455 2,882,731 RGD:1624291
RGD:1600115
G Tert telomerase reverse transcriptase JBrowse link 1 32,250,876 32,275,330 RGD:1600115
RGD:13792537
RGD:1624291
G Wrap53 WD repeat containing, antisense to TP53 JBrowse link 10 56,169,024 56,185,800 RGD:1600115
RGD:1624291
translesion synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dtl denticleless E3 ubiquitin protein ligase homolog JBrowse link 13 110,219,276 110,257,345 RGD:1624291
RGD:1600115
G Faap20 FA core complex associated protein 20 JBrowse link 5 172,648,171 172,655,576 RGD:1624291
RGD:1600115
G Parp10 poly (ADP-ribose) polymerase family, member 10 JBrowse link 7 117,291,592 117,300,878 RGD:1624291
G Pclaf PCNA clamp associated factor JBrowse link 8 71,514,281 71,526,182 RGD:1624291
RGD:13792537
RGD:1600115
G Pcna proliferating cell nuclear antigen JBrowse link 3 124,880,698 124,884,570 RGD:1624291
RGD:13792537
RGD:1600115
G Poli DNA polymerase iota JBrowse link 18 65,749,107 65,768,805 RGD:1624291
G Polk DNA polymerase kappa JBrowse link 2 27,305,718 27,364,906 RGD:13792537
G Poln DNA polymerase nu JBrowse link 14 81,837,764 82,037,999 RGD:1624291
RGD:1600115
G Primpol primase and DNA directed polymerase JBrowse link 16 48,863,385 48,900,409 RGD:1624291
RGD:1600115
G Sprtn SprT-like N-terminal domain JBrowse link 19 57,649,901 57,657,158 RGD:1600115
RGD:1624291
G Vcp valosin-containing protein JBrowse link 5 58,426,548 58,445,953 RGD:1624291
RGD:1600115
G Zbtb1 zinc finger and BTB domain containing 1 JBrowse link 6 99,401,775 99,425,739 RGD:1624291
RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17926
    metabolic process 10677
      biosynthetic process 5381
        cellular biosynthetic process 5209
          cellular macromolecule biosynthetic process 4277
            DNA biosynthetic process 185
              DNA amplification + 0
              DNA synthesis involved in DNA repair + 28
              DNA synthesis involved in DNA replication + 0
              RNA-dependent DNA biosynthetic process + 68
              negative regulation of DNA biosynthetic process + 43
              positive regulation of DNA biosynthetic process + 77
              regulation of DNA biosynthetic process + 126
Path 2
Term Annotations click to browse term
  biological_process 17926
    metabolic process 10677
      cellular metabolic process 9772
        heterocycle metabolic process 5033
          nucleobase-containing compound metabolic process 4884
            nucleic acid metabolic process 4438
              DNA metabolic process 822
                DNA biosynthetic process 185
                  DNA amplification + 0
                  DNA synthesis involved in DNA repair + 28
                  DNA synthesis involved in DNA replication + 0
                  RNA-dependent DNA biosynthetic process + 68
                  negative regulation of DNA biosynthetic process + 43
                  positive regulation of DNA biosynthetic process + 77
                  regulation of DNA biosynthetic process + 126
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.