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ONTOLOGY REPORT - ANNOTATIONS


Term:renal vesicle formation
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Accession:GO:0072033 term browser browse the term
Definition:The developmental process pertaining to the initial formation of the renal vesicle from condensed mesenchymal cells. The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells.
Synonyms:related_synonym: nephron epithelium formation


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renal vesicle formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 IEA
ISO
GO_REF:0000107
MGI:1858008 (MGI:3714576|PMID:17537789)
Ensembl
RGD
PMID:17537789 GO_REF:0000107, MGI:3714576 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Wnt4 Wnt family member 4 IEA
ISO
GO_REF:0000107
(MGI:3588895|PMID:16054034)
Ensembl
RGD
PMID:16054034 GO_REF:0000107, MGI:3588895 NCBI chr 5:155,649,238...155,668,065
Ensembl chr 5:155,649,217...155,672,579
JBrowse link
mesenchymal to epithelial transition involved in metanephric renal vesicle formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smo smoothened, frizzled class receptor IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:3611729|PMID:16396903)
Ensembl
UniProt
RGD
PMID:16396903 GO_REF:0000024, GO_REF:0000107, MGI:3611729 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
renal vesicle induction term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox8 SRY-box transcription factor 8 ISS
ISO
GO_REF:0000024
(MGI:4939090|PMID:21212101)
UniProt
RGD
PMID:21212101 GO_REF:0000024, MGI:4939090 NCBI chr10:14,932,348...14,937,336
Ensembl chr10:14,932,348...14,937,336
JBrowse link
G Sox9 SRY-box transcription factor 9 ISS
ISO
GO_REF:0000024
(MGI:4939090|PMID:21212101)
UniProt
RGD
PMID:21212101 GO_REF:0000024, MGI:4939090 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Wnt4 Wnt family member 4 IEA
ISO
GO_REF:0000107
(MGI:2150217|PMID:11507767)
Ensembl
RGD
PMID:11507767 GO_REF:0000107, MGI:2150217 NCBI chr 5:155,649,238...155,668,065
Ensembl chr 5:155,649,217...155,672,579
JBrowse link
ureteric bud invasion term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fmn1 formin 1 ISO (MGI:65439|PMID:7517224) RGD PMID:7517224 MGI:65439 NCBI chr 3:104,783,093...105,170,761
Ensembl chr 3:104,816,987...105,086,436
JBrowse link
G Kif26b kinesin family member 26B ISO MGI:4459557 (MGI:4454194|PMID:20439720) RGD PMID:20439720 MGI:4454194 NCBI chr13:96,775,356...97,173,469
Ensembl chr13:96,775,357...97,173,469
JBrowse link
G Sall1 spalt-like transcription factor 1 ISO MGI:2388379 (MGI:2149437|PMID:11688560), (MGI:3665498|PMID:16839447) RGD PMID:11688560, PMID:16839447 MGI:2149437, MGI:3665498 NCBI chr19:23,387,737...23,405,025
Ensembl chr19:23,389,375...23,405,039
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure formation involved in morphogenesis 1214
        renal vesicle formation 8
          mesenchymal to epithelial transition involved in renal vesicle formation + 1
          mesonephric renal vesicle formation + 0
          metanephric renal vesicle formation + 4
          pre-tubular aggregate formation + 0
          renal vesicle induction + 3
Path 2
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure development 6268
        multicellular organism development 5743
          system development 5279
            urogenital system development 432
              renal system development 382
                kidney development 368
                  nephron development 166
                    nephron epithelium development 124
                      renal vesicle development 20
                        renal vesicle morphogenesis 18
                          renal vesicle formation 8
                            mesenchymal to epithelial transition involved in renal vesicle formation + 1
                            mesonephric renal vesicle formation + 0
                            metanephric renal vesicle formation + 4
                            pre-tubular aggregate formation + 0
                            renal vesicle induction + 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.