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ONTOLOGY REPORT - ANNOTATIONS


Term:nephron tubule formation
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Accession:GO:0072079 term browser browse the term
Definition:The developmental process pertaining to the initial formation of a nephron tubule from unspecified parts. A nephron tubule is an epithelial tube that is part of the nephron, the functional part of the kidney.


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nephron tubule formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTNNB1 catenin beta 1 JBrowse link 3 41,372,368 41,414,030 RGD:9068941
G WNT6 Wnt family member 6 JBrowse link 2B 224,714,217 224,728,557 RGD:9068941
mesonephric duct formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HNF1B HNF1 homeobox B JBrowse link 17 19,633,424 19,691,863 RGD:9068941
G WNT9B Wnt family member 9B JBrowse link 17 10,801,176 10,818,516 RGD:9068941
mesonephric tubule formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PAX2 paired box 2 JBrowse link 10 100,822,676 100,904,065 RGD:9068941
G SIX1 SIX homeobox 1 JBrowse link 14 59,515,324 59,518,740 RGD:9068941
metanephric nephron tubule formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PAX2 paired box 2 JBrowse link 10 100,822,676 100,904,065 RGD:9068941
G PAX8 paired box 8 JBrowse link 2A 114,162,110 114,222,865 RGD:9068941
G SOX8 SRY-box transcription factor 8 JBrowse link 16 982,054 988,955 RGD:9068941
G SOX9 SRY-box transcription factor 9 JBrowse link 17 71,491,419 71,498,911 RGD:9068941
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 10 8,055,853 8,086,271 RGD:9068941
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 10 8,055,853 8,086,271 RGD:9068941
positive regulation of ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 10 8,055,853 8,086,271 RGD:9068941
G GDNF glial cell derived neurotrophic factor JBrowse link 5 77,573,466 77,600,478 RGD:9068941
G SIX1 SIX homeobox 1 JBrowse link 14 59,515,324 59,518,740 RGD:9068941
G SIX4 SIX homeobox 4 JBrowse link 14 59,580,587 59,592,654 RGD:9068941
regulation of ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GDNF glial cell derived neurotrophic factor JBrowse link 5 77,573,466 77,600,478 RGD:9068941
specification of anterior mesonephric tubule identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G OSR1 odd-skipped related transcription factor 1 JBrowse link 2A 19,451,067 19,458,229 RGD:9068941
specification of loop of Henle identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IRX1 iroquois homeobox 1 JBrowse link 5 3,610,229 3,615,279 RGD:9068941
G IRX2 iroquois homeobox 2 JBrowse link 5 2,776,054 2,777,005 RGD:9068941
G IRX3 iroquois homeobox 3 JBrowse link 16 53,622,028 53,627,033 RGD:9068941
specification of posterior mesonephric tubule identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G OSR1 odd-skipped related transcription factor 1 JBrowse link 2A 19,451,067 19,458,229 RGD:9068941
ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 10 8,055,853 8,086,271 RGD:9068941
G GDNF glial cell derived neurotrophic factor JBrowse link 5 77,573,466 77,600,478 RGD:9068941
G GREM1 gremlin 1, DAN family BMP antagonist JBrowse link 15 30,051,483 30,068,243 RGD:9068941
G HS2ST1 heparan sulfate 2-O-sulfotransferase 1 JBrowse link 1 88,283,486 88,480,498 RGD:9068941
G NOG noggin JBrowse link 17 55,532,208 55,533,782 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12351
    developmental process 5690
      anatomical structure morphogenesis 2521
        embryonic morphogenesis 625
          morphogenesis of embryonic epithelium 180
            embryonic epithelial tube formation 153
              nephron tubule formation 19
                mesonephric tubule formation + 11
                metanephric nephron tubule formation + 4
                pronephric nephron tubule formation 0
                specification of nephron tubule identity + 4
Path 2
Term Annotations click to browse term
  biological_process 12351
    developmental process 5690
      anatomical structure development 5315
        multicellular organism development 4860
          system development 4592
            urogenital system development 408
              renal system development 363
                kidney development 349
                  nephron development 161
                    nephron epithelium development 119
                      nephron tubule development 102
                        nephron tubule morphogenesis 82
                          nephron tubule formation 19
                            mesonephric tubule formation + 11
                            metanephric nephron tubule formation + 4
                            pronephric nephron tubule formation 0
                            specification of nephron tubule identity + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.