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ONTOLOGY REPORT - ANNOTATIONS


Term:nephron tubule formation
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Accession:GO:0072079 term browser browse the term
Definition:The developmental process pertaining to the initial formation of a nephron tubule from unspecified parts. A nephron tubule is an epithelial tube that is part of the nephron, the functional part of the kidney.


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nephron tubule formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTNNB1 catenin beta 1 JBrowse link 23 10,559,722 10,572,933 RGD:13508589
G WNT6 Wnt family member 6 JBrowse link 37 25,452,875 25,457,437 RGD:13508589
mesonephric duct formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HNF1B HNF1 homeobox B JBrowse link 9 37,437,992 37,493,200 RGD:13508589
G WNT9B Wnt family member 9B JBrowse link 9 10,157,607 10,172,664 RGD:13508589
mesonephric tubule formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SIX1 SIX homeobox 1 JBrowse link 8 35,676,705 35,679,534 RGD:13508589
metanephric nephron tubule formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PAX8 paired box 8 JBrowse link 17 37,307,130 37,331,729 RGD:13508589
G SOX8 SRY-box transcription factor 8 JBrowse link 6 39,667,941 39,672,716 RGD:13508589
G SOX9 SRY-box transcription factor 9 JBrowse link 9 8,275,049 8,278,172 RGD:13508589
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 2 28,068,143 28,098,445 RGD:13508589
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 2 28,068,143 28,098,445 RGD:13508589
positive regulation of ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 2 28,068,143 28,098,445 RGD:13508589
G GDNF glial cell derived neurotrophic factor JBrowse link 4 70,966,694 70,991,860 RGD:13508589
G SIX1 SIX homeobox 1 JBrowse link 8 35,676,705 35,679,534 RGD:13508589
G SIX4 SIX homeobox 4 JBrowse link 8 35,735,893 35,748,976 RGD:13508589
specification of anterior mesonephric tubule identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G OSR1 odd-skipped related transcription factor 1 JBrowse link 17 14,508,543 14,515,657 RGD:13508589
specification of loop of Henle identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HES5 hes family bHLH transcription factor 5 JBrowse link 5 57,387,961 57,389,412 RGD:13508589
G IRX1 iroquois homeobox 1 JBrowse link 34 9,537,231 9,544,029 RGD:13508589
G IRX3 iroquois homeobox 3 JBrowse link 2 61,555,608 61,559,185 RGD:13508589
specification of posterior mesonephric tubule identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G OSR1 odd-skipped related transcription factor 1 JBrowse link 17 14,508,543 14,515,657 RGD:13508589
ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 2 28,068,143 28,098,445 RGD:13508589
G GDNF glial cell derived neurotrophic factor JBrowse link 4 70,966,694 70,991,860 RGD:13508589
G GREM1 gremlin 1, DAN family BMP antagonist JBrowse link 30 2,219,535 2,231,868 RGD:13508589
G HS2ST1 heparan sulfate 2-O-sulfotransferase 1 JBrowse link 6 61,124,393 61,298,912 RGD:13508589

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14453
    developmental process 3809
      anatomical structure morphogenesis 1713
        embryonic morphogenesis 400
          morphogenesis of embryonic epithelium 108
            embryonic epithelial tube formation 90
              nephron tubule formation 17
                mesonephric tubule formation + 9
                metanephric nephron tubule formation + 3
                pronephric nephron tubule formation 0
                specification of nephron tubule identity + 4
Path 2
Term Annotations click to browse term
  biological_process 14453
    developmental process 3809
      anatomical structure development 3519
        multicellular organism development 3130
          system development 2864
            urogenital system development 212
              renal system development 186
                kidney development 179
                  nephron development 96
                    nephron epithelium development 77
                      nephron tubule development 63
                        nephron tubule morphogenesis 49
                          nephron tubule formation 17
                            mesonephric tubule formation + 9
                            metanephric nephron tubule formation + 3
                            pronephric nephron tubule formation 0
                            specification of nephron tubule identity + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.