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ONTOLOGY REPORT - ANNOTATIONS


Term:nephron tubule formation
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Accession:GO:0072079 term browser browse the term
Definition:The developmental process pertaining to the initial formation of a nephron tubule from unspecified parts. A nephron tubule is an epithelial tube that is part of the nephron, the functional part of the kidney.


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nephron tubule formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTNNB1 catenin beta 1 JBrowse link 13 25,163,550 25,208,314 RGD:9068941
G WNT6 Wnt family member 6 JBrowse link 15 120,901,471 120,917,359 RGD:14298760
mesonephric duct formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HNF1B HNF1 homeobox B JBrowse link 12 39,143,119 39,201,631 RGD:14298760
G WNT9B Wnt family member 9B JBrowse link 12 17,709,046 17,733,434 RGD:14298760
mesonephric tubule formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PAX2 paired box 2 JBrowse link 14 111,822,334 111,914,950 RGD:9068941
G SIX1 SIX homeobox 1 JBrowse link 1 189,620,430 189,624,652 RGD:14298760
metanephric nephron tubule formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PAX2 paired box 2 JBrowse link 14 111,822,334 111,914,950 RGD:9068941
G SOX8 SRY-box transcription factor 8 JBrowse link 3 40,825,151 40,830,085 RGD:14298760
G SOX9 SRY-box transcription factor 9 JBrowse link 12 8,642,154 8,647,315 RGD:14298760
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 10 63,367,684 63,397,977 RGD:14298760
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 10 63,367,684 63,397,977 RGD:14298760
positive regulation of ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 10 63,367,684 63,397,977 RGD:14298760
G GDNF glial cell derived neurotrophic factor JBrowse link 16 22,936,602 22,965,929 RGD:14298760
G SIX1 SIX homeobox 1 JBrowse link 1 189,620,430 189,624,652 RGD:14298760
G SIX4 SIX homeobox 4 JBrowse link 1 189,670,390 189,682,378 RGD:14298760
regulation of ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GDNF glial cell derived neurotrophic factor JBrowse link 16 22,936,602 22,965,929 RGD:9068941
specification of anterior mesonephric tubule identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G OSR1 odd-skipped related transcription factor 1 JBrowse link 3 118,368,471 118,765,107 RGD:14298760
specification of loop of Henle identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HES5 hes family bHLH transcription factor 5 JBrowse link 6 64,409,110 64,410,541 RGD:14298760
G IRX1 iroquois homeobox 1 JBrowse link 16 77,695,704 77,701,089 RGD:14298760
G IRX2 iroquois homeobox 2 JBrowse link 16 78,305,869 78,322,776 RGD:14298760
G IRX3 iroquois homeobox 3 JBrowse link 6 31,044,919 31,049,067 RGD:14298760
specification of posterior mesonephric tubule identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G OSR1 odd-skipped related transcription factor 1 JBrowse link 3 118,368,471 118,765,107 RGD:14298760
ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 10 63,367,684 63,397,977 RGD:14298760
G GDNF glial cell derived neurotrophic factor JBrowse link 16 22,936,602 22,965,929 RGD:14298760
G GREM1 gremlin 1, DAN family BMP antagonist JBrowse link 1 136,617,041 136,629,293 RGD:14298760
G HS2ST1 heparan sulfate 2-O-sulfotransferase 1 JBrowse link 4 129,101,900 129,258,372 RGD:14298760
G NOG noggin JBrowse link 12 32,891,321 32,892,206 RGD:14298760

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16411
    developmental process 6229
      anatomical structure morphogenesis 2750
        embryonic morphogenesis 661
          morphogenesis of embryonic epithelium 182
            embryonic epithelial tube formation 155
              nephron tubule formation 19
                mesonephric tubule formation + 11
                metanephric nephron tubule formation + 3
                pronephric nephron tubule formation 0
                specification of nephron tubule identity + 5
Path 2
Term Annotations click to browse term
  biological_process 16411
    developmental process 6229
      anatomical structure development 5770
        multicellular organism development 5256
          system development 4903
            urogenital system development 421
              renal system development 371
                kidney development 358
                  nephron development 165
                    nephron epithelium development 123
                      nephron tubule development 104
                        nephron tubule morphogenesis 82
                          nephron tubule formation 19
                            mesonephric tubule formation + 11
                            metanephric nephron tubule formation + 3
                            pronephric nephron tubule formation 0
                            specification of nephron tubule identity + 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.